RNA–Protein interactions for RNA: ENST00000501271.2

CLIP1-204, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 2,426 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-204ENST00000501271 NOM1Q5C9Z4 860 aaKnown RBP11.28□□□□□ -0.6
CLIP1-204ENST00000501271 IQCA1Q86XH1 822 aa11.28□□□□□ -0.6
CLIP1-204ENST00000501271 TRMT44Q8IYL2 757 aaKnown RBP11.28□□□□□ -0.6
CLIP1-204ENST00000501271 SMARCE1Q969G3 411 aa11.28□□□□□ -0.6
CLIP1-204ENST00000501271 V9GY48 417 aaPredicted RBP11.28□□□□□ -0.6
CLIP1-204ENST00000501271 TRIM75PA6NK02 468 aa11.28□□□□□ -0.6
CLIP1-204ENST00000501271 KIF2AO00139 706 aaPredicted RBP11.28□□□□□ -0.6
CLIP1-204ENST00000501271 MYO1BO43795 1136 aa11.28□□□□□ -0.6
CLIP1-204ENST00000501271 GTF2E1P29083 439 aaPredicted RBP11.28□□□□□ -0.6
CLIP1-204ENST00000501271 NPY5RQ15761 445 aa11.28□□□□□ -0.6
CLIP1-204ENST00000501271 PTF1AQ7RTS3 328 aa11.28□□□□□ -0.6
CLIP1-204ENST00000501271 MED15Q96RN5 788 aa11.28□□□□□ -0.6
CLIP1-204ENST00000501271 TMX1Q9H3N1 280 aa11.28□□□□□ -0.6
CLIP1-204ENST00000501271 RBM28Q9NW13 759 aaKnown RBP11.28□□□□□ -0.6
CLIP1-204ENST00000501271 AATFQ9NY61 560 aaKnown RBP eCLIP11.28□□□□□ -0.6
CLIP1-204ENST00000501271 TFCP2L1Q9NZI6 479 aa11.28□□□□□ -0.6
CLIP1-204ENST00000501271 NOL12Q9UGY1 213 aaKnown RBP eCLIP11.28□□□□□ -0.6
CLIP1-204ENST00000501271 DDX52Q9Y2R4 599 aaKnown RBP eCLIP11.28□□□□□ -0.6
CLIP1-204ENST00000501271 NFE2L3Q9Y4A8 694 aa11.28□□□□□ -0.6
CLIP1-204ENST00000501271 V9GYY5 206 aaPredicted RBP11.28□□□□□ -0.6
CLIP1-204ENST00000501271 CNTNAP5Q8WYK1 1306 aa11.28□□□□□ -0.6
CLIP1-204ENST00000501271 SBF2Q86WG5 1849 aa11.27□□□□□ -0.6
CLIP1-204ENST00000501271 NRDCO43847 1150 aa11.27□□□□□ -0.6
CLIP1-204ENST00000501271 TOP1P11387 765 aaKnown RBP11.27□□□□□ -0.6
CLIP1-204ENST00000501271 ZNF18P17022 549 aa11.27□□□□□ -0.6
CLIP1-204ENST00000501271 XBP1P17861 261 aa11.27□□□□□ -0.6
CLIP1-204ENST00000501271 PRDX5P30044 214 aa11.27□□□□□ -0.6
CLIP1-204ENST00000501271 SLC10A5Q5PT55 438 aa11.27□□□□□ -0.6
CLIP1-204ENST00000501271 TMTC3Q6ZXV5 915 aa11.27□□□□□ -0.6
CLIP1-204ENST00000501271 CCDC24Q8N4L8 307 aa11.27□□□□□ -0.6
CLIP1-204ENST00000501271 SPATA20Q8TB22 786 aa11.27□□□□□ -0.6
CLIP1-204ENST00000501271 TNFRSF25Q93038 417 aa11.27□□□□□ -0.6
CLIP1-204ENST00000501271 EPSTI1Q96J88 318 aa11.27□□□□□ -0.6
CLIP1-204ENST00000501271 SRP68Q9UHB9 627 aaKnown RBP11.27□□□□□ -0.6
CLIP1-204ENST00000501271 CNTNAP4Q9C0A0 1308 aa11.27□□□□□ -0.6
CLIP1-204ENST00000501271 SEMA3EO15041 775 aa11.27□□□□□ -0.61
CLIP1-204ENST00000501271 DDAH1O94760 285 aa11.27□□□□□ -0.61
CLIP1-204ENST00000501271 CYP2D6P10635 497 aa11.27□□□□□ -0.61
CLIP1-204ENST00000501271 PCP11498 1178 aaKnown RBP11.27□□□□□ -0.61
CLIP1-204ENST00000501271 CBX1P83916 185 aa11.27□□□□□ -0.61
CLIP1-204ENST00000501271 FAM98CQ17RN3 349 aaKnown RBP11.27□□□□□ -0.61
CLIP1-204ENST00000501271 SYT10Q6XYQ8 523 aa11.27□□□□□ -0.61
CLIP1-204ENST00000501271 MLKLQ8NB16 471 aa11.27□□□□□ -0.61
CLIP1-204ENST00000501271 DHX58Q96C10 678 aa11.27□□□□□ -0.61
CLIP1-204ENST00000501271 DCP1AQ9NPI6 582 aaPredicted RBP11.27□□□□□ -0.61
CLIP1-204ENST00000501271 SPDYE4A6NLX3 237 aa11.26□□□□□ -0.61
CLIP1-204ENST00000501271 CALM1P0DP23 149 aa11.26□□□□□ -0.61
CLIP1-204ENST00000501271 CALM2P0DP24 149 aa11.26□□□□□ -0.61
CLIP1-204ENST00000501271 CALM3P0DP25 149 aa11.26□□□□□ -0.61
CLIP1-204ENST00000501271 RPS8P62241 208 aaKnown RBP11.26□□□□□ -0.61
CLIP1-204ENST00000501271 FAM47AQ5JRC9 791 aa11.26□□□□□ -0.61
CLIP1-204ENST00000501271 TMEM139Q8IV31 216 aa11.26□□□□□ -0.61
CLIP1-204ENST00000501271 SRBD1Q8N5C6 995 aaKnown RBP11.26□□□□□ -0.61
CLIP1-204ENST00000501271 TRIML1Q8N9V2 468 aa11.26□□□□□ -0.61
CLIP1-204ENST00000501271 ENOX1Q8TC92 643 aaKnown RBP11.26□□□□□ -0.61
CLIP1-204ENST00000501271 TNRC6CQ9HCJ0 1690 aaKnown RBP11.26□□□□□ -0.61
CLIP1-204ENST00000501271 JAG2Q9Y219 1238 aa11.26□□□□□ -0.61
CLIP1-204ENST00000501271 MORC2Q9Y6X9 1032 aaPredicted RBP11.26□□□□□ -0.61
CLIP1-204ENST00000501271 BTAF1O14981 1849 aa11.26□□□□□ -0.61
CLIP1-204ENST00000501271 PDS5AQ29RF7 1337 aaKnown RBP11.26□□□□□ -0.61
CLIP1-204ENST00000501271 ORC4O43929 436 aa11.26□□□□□ -0.61
CLIP1-204ENST00000501271 CASP1P29466 404 aa11.26□□□□□ -0.61
CLIP1-204ENST00000501271 KANK3Q6NY19 840 aa11.26□□□□□ -0.61
CLIP1-204ENST00000501271 SYMPKQ92797 1274 aaKnown RBP11.26□□□□□ -0.61
CLIP1-204ENST00000501271 ZMYND15Q9H091 742 aa11.26□□□□□ -0.61
CLIP1-204ENST00000501271 DACH1Q9UI36 760 aa11.26□□□□□ -0.61
CLIP1-204ENST00000501271 HIBADHP31937 336 aaKnown RBP11.25□□□□□ -0.61
CLIP1-204ENST00000501271 PLCD1P51178 756 aa11.25□□□□□ -0.61
CLIP1-204ENST00000501271 TBX2Q13207 712 aaPredicted RBP11.25□□□□□ -0.61
CLIP1-204ENST00000501271 ZNF174Q15697 407 aa11.25□□□□□ -0.61
CLIP1-204ENST00000501271 TXNRD3Q86VQ6 643 aa11.25□□□□□ -0.61
CLIP1-204ENST00000501271 ERO1AQ96HE7 468 aa11.25□□□□□ -0.61
CLIP1-204ENST00000501271 CRNKL1Q9BZJ0 848 aaKnown RBP11.25□□□□□ -0.61
CLIP1-204ENST00000501271 L2HGDHQ9H9P8 463 aa11.25□□□□□ -0.61
CLIP1-204ENST00000501271 PRDM10Q9NQV6 1147 aa11.25□□□□□ -0.61
CLIP1-204ENST00000501271 SAMSN1Q9NSI8 373 aaKnown RBP11.25□□□□□ -0.61
CLIP1-204ENST00000501271 CGNQ9P2M7 1197 aaKnown RBP11.25□□□□□ -0.61
CLIP1-204ENST00000501271 LTBP4Q8N2S1 1624 aa11.25□□□□□ -0.61
CLIP1-204ENST00000501271 ADAMTS3O15072 1205 aa11.25□□□□□ -0.61
CLIP1-204ENST00000501271 SLU7O95391 586 aaKnown RBP11.25□□□□□ -0.61
CLIP1-204ENST00000501271 VEGFAP15692 232 aaPredicted RBP11.25□□□□□ -0.61
CLIP1-204ENST00000501271 AFMP43652 599 aa11.25□□□□□ -0.61
CLIP1-204ENST00000501271 ELF2Q15723 593 aa11.25□□□□□ -0.61
CLIP1-204ENST00000501271 SLC4A8Q2Y0W8 1093 aa11.25□□□□□ -0.61
CLIP1-204ENST00000501271 SLC51AQ86UW1 340 aa11.25□□□□□ -0.61
CLIP1-204ENST00000501271 NBPF5PQ86XG9 351 aaPredicted RBP11.25□□□□□ -0.61
CLIP1-204ENST00000501271 LRRN4CLQ8ND94 238 aa11.25□□□□□ -0.61
CLIP1-204ENST00000501271 NLRP3Q96P20 1036 aa11.25□□□□□ -0.61
CLIP1-204ENST00000501271 NOL10Q9BSC4 688 aaKnown RBP11.25□□□□□ -0.61
CLIP1-204ENST00000501271 NARFQ9UHQ1 456 aa11.25□□□□□ -0.61
CLIP1-204ENST00000501271 FANCGO15287 622 aa11.24□□□□□ -0.61
CLIP1-204ENST00000501271 SLFN14P0C7P3 912 aa11.24□□□□□ -0.61
CLIP1-204ENST00000501271 CDK11BP21127 795 aaKnown RBP11.24□□□□□ -0.61
CLIP1-204ENST00000501271 TTC38Q5R3I4 469 aa11.24□□□□□ -0.61
CLIP1-204ENST00000501271 SH3RF1Q7Z6J0 888 aa11.24□□□□□ -0.61
CLIP1-204ENST00000501271 AMIGO3Q86WK7 504 aa11.24□□□□□ -0.61
CLIP1-204ENST00000501271 SMAP1Q8IYB5 467 aaPredicted RBP11.24□□□□□ -0.61
CLIP1-204ENST00000501271 CTCFLQ8NI51 663 aaPredicted RBP11.24□□□□□ -0.61
CLIP1-204ENST00000501271 PAGE5Q96GU1 130 aa11.24□□□□□ -0.61
CLIP1-204ENST00000501271 SETDB2Q96T68 719 aa11.24□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms