RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 POSTNQ15063 836 aa18.42■□□□□ 0.54
MSH5-SAPCD1-208ENST00000498473 ZNF654Q8IZM8 581 aa18.42■□□□□ 0.54
MSH5-SAPCD1-208ENST00000498473 LRRN4CLQ8ND94 238 aa18.42■□□□□ 0.54
MSH5-SAPCD1-208ENST00000498473 MORC2Q9Y6X9 1032 aaPredicted RBP18.42■□□□□ 0.54
MSH5-SAPCD1-208ENST00000498473 LAMB2P55268 1798 aa18.42■□□□□ 0.54
MSH5-SAPCD1-208ENST00000498473 POLR2DO15514 142 aaKnown RBP18.42■□□□□ 0.54
MSH5-SAPCD1-208ENST00000498473 ZBTB7AO95365 584 aa18.42■□□□□ 0.54
MSH5-SAPCD1-208ENST00000498473 TUBB4AP04350 444 aa18.42■□□□□ 0.54
MSH5-SAPCD1-208ENST00000498473 FMR1Q06787 632 aaKnown RBP eCLIP18.42■□□□□ 0.54
MSH5-SAPCD1-208ENST00000498473 SEC23AQ15436 765 aa18.42■□□□□ 0.54
MSH5-SAPCD1-208ENST00000498473 TRIM65Q6PJ69 517 aa18.42■□□□□ 0.54
MSH5-SAPCD1-208ENST00000498473 TMEM139Q8IV31 216 aa18.42■□□□□ 0.54
MSH5-SAPCD1-208ENST00000498473 TMTC2Q8N394 836 aa18.42■□□□□ 0.54
MSH5-SAPCD1-208ENST00000498473 ZNF579Q8NAF0 562 aaKnown RBP18.42■□□□□ 0.54
MSH5-SAPCD1-208ENST00000498473 RTL9Q8NET4 1388 aa18.42■□□□□ 0.54
MSH5-SAPCD1-208ENST00000498473 SMIM22K7EJ46 135 aa18.41■□□□□ 0.54
MSH5-SAPCD1-208ENST00000498473 CHRNDQ07001 517 aa18.41■□□□□ 0.54
MSH5-SAPCD1-208ENST00000498473 TBX2Q13207 712 aaPredicted RBP18.41■□□□□ 0.54
MSH5-SAPCD1-208ENST00000498473 CCDC152Q4G0S7 254 aa18.41■□□□□ 0.54
MSH5-SAPCD1-208ENST00000498473 FBXO38Q6PIJ6 1188 aa18.41■□□□□ 0.54
MSH5-SAPCD1-208ENST00000498473 REXO1L1PQ8IX06 675 aa18.41■□□□□ 0.54
MSH5-SAPCD1-208ENST00000498473 SRPRBQ9Y5M8 271 aaKnown RBP18.41■□□□□ 0.54
MSH5-SAPCD1-208ENST00000498473 ERICH2A1L162 156 aa18.41■□□□□ 0.54
MSH5-SAPCD1-208ENST00000498473 NTSR2O95665 410 aa18.41■□□□□ 0.54
MSH5-SAPCD1-208ENST00000498473 TOP1P11387 765 aaKnown RBP18.41■□□□□ 0.54
MSH5-SAPCD1-208ENST00000498473 ZNF18P17022 549 aa18.41■□□□□ 0.54
MSH5-SAPCD1-208ENST00000498473 ETF1P62495 437 aaKnown RBP18.41■□□□□ 0.54
MSH5-SAPCD1-208ENST00000498473 MORC3Q14149 939 aa18.41■□□□□ 0.54
MSH5-SAPCD1-208ENST00000498473 NFIXQ14938 502 aa18.41■□□□□ 0.54
MSH5-SAPCD1-208ENST00000498473 USP49Q70CQ1 688 aa18.41■□□□□ 0.54
MSH5-SAPCD1-208ENST00000498473 CCDC125Q86Z20 511 aa18.41■□□□□ 0.54
MSH5-SAPCD1-208ENST00000498473 NUP133Q8WUM0 1156 aa18.41■□□□□ 0.54
MSH5-SAPCD1-208ENST00000498473 MED15Q96RN5 788 aa18.41■□□□□ 0.54
MSH5-SAPCD1-208ENST00000498473 RNF41Q9H4P4 317 aaPredicted RBP18.41■□□□□ 0.54
MSH5-SAPCD1-208ENST00000498473 LRP2BPQ9P2M1 347 aa18.41■□□□□ 0.54
MSH5-SAPCD1-208ENST00000498473 MYH2Q9UKX2 1941 aa18.4■□□□□ 0.54
MSH5-SAPCD1-208ENST00000498473 CCDC196A0A1B0GTZ2 297 aa18.4■□□□□ 0.54
MSH5-SAPCD1-208ENST00000498473 FANCGO15287 622 aa18.4■□□□□ 0.54
MSH5-SAPCD1-208ENST00000498473 ACTN4O43707 911 aaKnown RBP18.4■□□□□ 0.54
MSH5-SAPCD1-208ENST00000498473 CYP7A1P22680 504 aa18.4■□□□□ 0.54
MSH5-SAPCD1-208ENST00000498473 IGHMBP2P38935 993 aaKnown RBP18.4■□□□□ 0.54
MSH5-SAPCD1-208ENST00000498473 GRAMD1CQ8IYS0 662 aa18.4■□□□□ 0.54
MSH5-SAPCD1-208ENST00000498473 ANAPC4Q9UJX5 808 aa18.4■□□□□ 0.54
MSH5-SAPCD1-208ENST00000498473 SCN7AQ01118 1682 aa18.4■□□□□ 0.54
MSH5-SAPCD1-208ENST00000498473 PARP10Q53GL7 1025 aa18.39■□□□□ 0.54
MSH5-SAPCD1-208ENST00000498473 SDR42E1Q8WUS8 393 aa18.39■□□□□ 0.54
MSH5-SAPCD1-208ENST00000498473 HOOK1Q9UJC3 728 aaKnown RBP18.39■□□□□ 0.54
MSH5-SAPCD1-208ENST00000498473 CCP110O43303 1012 aa18.39■□□□□ 0.53
MSH5-SAPCD1-208ENST00000498473 MLKLQ8NB16 471 aa18.39■□□□□ 0.53
MSH5-SAPCD1-208ENST00000498473 ENOX1Q8TC92 643 aaKnown RBP18.39■□□□□ 0.53
MSH5-SAPCD1-208ENST00000498473 CABP5Q9NP86 173 aa18.39■□□□□ 0.53
MSH5-SAPCD1-208ENST00000498473 FAM53CQ9NYF3 392 aa18.39■□□□□ 0.53
MSH5-SAPCD1-208ENST00000498473 IQSEC3Q9UPP2 1182 aaPredicted RBP18.39■□□□□ 0.53
MSH5-SAPCD1-208ENST00000498473 ATF5Q9Y2D1 282 aaPredicted RBP18.39■□□□□ 0.53
MSH5-SAPCD1-208ENST00000498473 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP18.39■□□□□ 0.537e-8■■□□□ 11.7
MSH5-SAPCD1-208ENST00000498473 CACNA1SQ13698 1873 aa18.39■□□□□ 0.53
MSH5-SAPCD1-208ENST00000498473 A0A1B0GUL6 1792 aa18.39■□□□□ 0.53
MSH5-SAPCD1-208ENST00000498473 TAF1P21675 1872 aa18.38■□□□□ 0.53
MSH5-SAPCD1-208ENST00000498473 TNKSO95271 1327 aa18.38■□□□□ 0.53
MSH5-SAPCD1-208ENST00000498473 PHLPP2Q6ZVD8 1323 aa18.38■□□□□ 0.53
MSH5-SAPCD1-208ENST00000498473 NPHP1O15259 732 aa18.38■□□□□ 0.53
MSH5-SAPCD1-208ENST00000498473 PKN1Q16512 942 aa18.38■□□□□ 0.53
MSH5-SAPCD1-208ENST00000498473 HSP90AA4PQ58FG1 418 aa18.38■□□□□ 0.53
MSH5-SAPCD1-208ENST00000498473 SPATA20Q8TB22 786 aa18.38■□□□□ 0.53
MSH5-SAPCD1-208ENST00000498473 SMARCE1Q969G3 411 aa18.38■□□□□ 0.53
MSH5-SAPCD1-208ENST00000498473 CSRNP2Q9H175 543 aa18.38■□□□□ 0.53
MSH5-SAPCD1-208ENST00000498473 ZNF804BA4D1E1 1349 aa18.38■□□□□ 0.53
MSH5-SAPCD1-208ENST00000498473 FAM205CA6NFA0 338 aa18.38■□□□□ 0.53
MSH5-SAPCD1-208ENST00000498473 MINDY4BA8MYZ0 360 aa18.38■□□□□ 0.53
MSH5-SAPCD1-208ENST00000498473 DDR1Q08345 913 aa18.38■□□□□ 0.53
MSH5-SAPCD1-208ENST00000498473 FUT2Q10981 343 aa18.38■□□□□ 0.53
MSH5-SAPCD1-208ENST00000498473 ERCC6LQ2NKX8 1250 aa18.38■□□□□ 0.53
MSH5-SAPCD1-208ENST00000498473 C3orf67Q6ZVT6 689 aa18.38■□□□□ 0.53
MSH5-SAPCD1-208ENST00000498473 SLC51AQ86UW1 340 aa18.38■□□□□ 0.53
MSH5-SAPCD1-208ENST00000498473 FCHSD1Q86WN1 690 aa18.38■□□□□ 0.53
MSH5-SAPCD1-208ENST00000498473 HOMER1Q86YM7 354 aa18.38■□□□□ 0.53
MSH5-SAPCD1-208ENST00000498473 UBAC1Q9BSL1 405 aa18.38■□□□□ 0.53
MSH5-SAPCD1-208ENST00000498473 RNF26Q9BY78 433 aaPredicted RBP18.38■□□□□ 0.53
MSH5-SAPCD1-208ENST00000498473 NFE2L3Q9Y4A8 694 aa18.38■□□□□ 0.53
MSH5-SAPCD1-208ENST00000498473 COL1A1P02452 1464 aaPredicted RBP18.38■□□□□ 0.53
MSH5-SAPCD1-208ENST00000498473 BAZ2AQ9UIF9 1905 aaKnown RBP18.37■□□□□ 0.53
MSH5-SAPCD1-208ENST00000498473 ATP2B1P20020 1258 aa18.37■□□□□ 0.53
MSH5-SAPCD1-208ENST00000498473 ERFEQ4G0M1 354 aa18.37■□□□□ 0.53
MSH5-SAPCD1-208ENST00000498473 EARS2Q5JPH6 523 aaKnown RBP18.37■□□□□ 0.53
MSH5-SAPCD1-208ENST00000498473 SETDB2Q96T68 719 aa18.37■□□□□ 0.53
MSH5-SAPCD1-208ENST00000498473 RIOK1Q9BRS2 568 aaKnown RBP18.37■□□□□ 0.53
MSH5-SAPCD1-208ENST00000498473 DNAI1Q9UI46 699 aa18.37■□□□□ 0.53
MSH5-SAPCD1-208ENST00000498473 MAGEB6P1A0A0J9YX57 407 aa18.37■□□□□ 0.53
MSH5-SAPCD1-208ENST00000498473 WTIPA6NIX2 430 aaPredicted RBP18.37■□□□□ 0.53
MSH5-SAPCD1-208ENST00000498473 TRMT44Q8IYL2 757 aaKnown RBP18.37■□□□□ 0.53
MSH5-SAPCD1-208ENST00000498473 PDILTQ8N807 584 aa18.37■□□□□ 0.53
MSH5-SAPCD1-208ENST00000498473 TRIML1Q8N9V2 468 aa18.37■□□□□ 0.53
MSH5-SAPCD1-208ENST00000498473 CEP131Q9UPN4 1083 aa18.37■□□□□ 0.53
MSH5-SAPCD1-208ENST00000498473 DUOX1Q9NRD9 1551 aa18.37■□□□□ 0.53
MSH5-SAPCD1-208ENST00000498473 A0A087X0B3 334 aa18.36■□□□□ 0.53
MSH5-SAPCD1-208ENST00000498473 H2AFXP16104 143 aaPredicted RBP18.36■□□□□ 0.53
MSH5-SAPCD1-208ENST00000498473 ENAHQ8N8S7 591 aaPredicted RBP18.36■□□□□ 0.53
MSH5-SAPCD1-208ENST00000498473 TC2NQ8N9U0 490 aa18.36■□□□□ 0.53
MSH5-SAPCD1-208ENST00000498473 ESR2Q92731 530 aa18.36■□□□□ 0.53
MSH5-SAPCD1-208ENST00000498473 ZNF446Q9NWS9 450 aa18.36■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 71.9 ms