RNA–Protein interactions for RNA: ENST00000496189.1

SF3A1-209, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 693 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-209ENST00000496189 TTC22Q5TAA0 569 aa19.51■□□□□ 0.71
SF3A1-209ENST00000496189 CD99L2Q8TCZ2 262 aa19.51■□□□□ 0.71
SF3A1-209ENST00000496189 EFCC1Q9HA90 598 aa19.51■□□□□ 0.71
SF3A1-209ENST00000496189 EPB41L4AQ9HCS5 686 aaPredicted RBP19.51■□□□□ 0.71
SF3A1-209ENST00000496189 CPA4Q9UI42 421 aa19.51■□□□□ 0.71
SF3A1-209ENST00000496189 TRIM17Q9Y577 477 aa19.51■□□□□ 0.71
SF3A1-209ENST00000496189 ROBO3Q96MS0 1386 aa19.5■□□□□ 0.71
SF3A1-209ENST00000496189 CYP2C8P10632 490 aa19.5■□□□□ 0.71
SF3A1-209ENST00000496189 ZYXQ15942 572 aaKnown RBP19.5■□□□□ 0.71
SF3A1-209ENST00000496189 SHROOM1Q2M3G4 852 aaPredicted RBP19.5■□□□□ 0.71
SF3A1-209ENST00000496189 TREML2Q5T2D2 321 aa19.5■□□□□ 0.71
SF3A1-209ENST00000496189 CCDC129Q6ZRS4 1044 aa19.5■□□□□ 0.71
SF3A1-209ENST00000496189 ZNF444Q8N0Y2 327 aaPredicted RBP19.5■□□□□ 0.71
SF3A1-209ENST00000496189 FAM227BQ96M60 508 aa19.5■□□□□ 0.71
SF3A1-209ENST00000496189 LOC285556D6RIA3 1793 aa19.49■□□□□ 0.71
SF3A1-209ENST00000496189 A0A0D9SFI3 127 aa19.49■□□□□ 0.71
SF3A1-209ENST00000496189 EVX2Q03828 476 aa19.49■□□□□ 0.71
SF3A1-209ENST00000496189 ICA1Q05084 483 aa19.49■□□□□ 0.71
SF3A1-209ENST00000496189 STK11IPQ8N1F8 1099 aa19.49■□□□□ 0.71
SF3A1-209ENST00000496189 ABHD8Q96I13 439 aa19.49■□□□□ 0.71
SF3A1-209ENST00000496189 KIAA1683Q9H0B3 1180 aa19.49■□□□□ 0.71
SF3A1-209ENST00000496189 CCDC171Q6TFL3 1326 aa19.49■□□□□ 0.71
SF3A1-209ENST00000496189 GNRH1P01148 92 aa19.48■□□□□ 0.71
SF3A1-209ENST00000496189 AKR1B1P15121 316 aa19.48■□□□□ 0.71
SF3A1-209ENST00000496189 GCLCP48506 637 aaPredicted RBP19.48■□□□□ 0.71
SF3A1-209ENST00000496189 IFFO2Q5TF58 517 aa19.48■□□□□ 0.71
SF3A1-209ENST00000496189 FBXO46Q6PJ61 603 aaPredicted RBP19.48■□□□□ 0.71
SF3A1-209ENST00000496189 C17orf99Q6UX52 265 aa19.48■□□□□ 0.71
SF3A1-209ENST00000496189 GTF3C2Q8WUA4 911 aaPredicted RBP19.48■□□□□ 0.71
SF3A1-209ENST00000496189 KANSL2Q9H9L4 492 aa19.48■□□□□ 0.71
SF3A1-209ENST00000496189 HOXD10P28358 340 aa19.47■□□□□ 0.71
SF3A1-209ENST00000496189 LACTBP83111 547 aaPredicted RBP19.47■□□□□ 0.71
SF3A1-209ENST00000496189 ATP2B2Q01814 1243 aa19.47■□□□□ 0.71
SF3A1-209ENST00000496189 PPARAQ07869 468 aa19.47■□□□□ 0.71
SF3A1-209ENST00000496189 CWC27Q6UX04 472 aaKnown RBP19.47■□□□□ 0.71
SF3A1-209ENST00000496189 OTOP1Q7RTM1 612 aa19.47■□□□□ 0.71
SF3A1-209ENST00000496189 RUFY2Q8WXA3 655 aa19.47■□□□□ 0.71
SF3A1-209ENST00000496189 C12orf42Q96LP6 360 aa19.47■□□□□ 0.71
SF3A1-209ENST00000496189 FMNL1O95466 1100 aaPredicted RBP19.46■□□□□ 0.71
SF3A1-209ENST00000496189 HOXA7P31268 230 aaPredicted RBP19.46■□□□□ 0.71
SF3A1-209ENST00000496189 PPP4R3BQ5MIZ7 849 aa19.46■□□□□ 0.71
SF3A1-209ENST00000496189 ASCC2Q9H1I8 757 aaPredicted RBP19.46■□□□□ 0.71
SF3A1-209ENST00000496189 USP17L15C9J2P7 530 aa19.45■□□□□ 0.7
SF3A1-209ENST00000496189 USP17L13C9JLJ4 530 aa19.45■□□□□ 0.7
SF3A1-209ENST00000496189 USP17L11C9JVI0 530 aa19.45■□□□□ 0.7
SF3A1-209ENST00000496189 USP17L18D6R9N7 530 aa19.45■□□□□ 0.7
SF3A1-209ENST00000496189 USP17L22D6RA61 530 aa19.45■□□□□ 0.7
SF3A1-209ENST00000496189 USP17L17D6RBQ6 530 aa19.45■□□□□ 0.7
SF3A1-209ENST00000496189 USP17L19D6RCP7 530 aa19.45■□□□□ 0.7
SF3A1-209ENST00000496189 USP17L20D6RJB6 530 aa19.45■□□□□ 0.7
SF3A1-209ENST00000496189 CAPN15O75808 1086 aa19.45■□□□□ 0.7
SF3A1-209ENST00000496189 TSPY3P0CV98 308 aa19.45■□□□□ 0.7
SF3A1-209ENST00000496189 TSPY8P0CW00 308 aa19.45■□□□□ 0.7
SF3A1-209ENST00000496189 GUCY1A2P33402 732 aa19.45■□□□□ 0.7
SF3A1-209ENST00000496189 PRMT2P55345 433 aa19.45■□□□□ 0.7
SF3A1-209ENST00000496189 FCGRTP55899 365 aa19.45■□□□□ 0.7
SF3A1-209ENST00000496189 USP17L24Q0WX57 530 aa19.45■□□□□ 0.7
SF3A1-209ENST00000496189 ALX1Q15699 326 aa19.45■□□□□ 0.7
SF3A1-209ENST00000496189 ACER1Q8TDN7 264 aa19.45■□□□□ 0.7
SF3A1-209ENST00000496189 EMILIN3Q9NT22 766 aa19.45■□□□□ 0.7
SF3A1-209ENST00000496189 ADGRA2Q96PE1 1338 aa19.45■□□□□ 0.7
SF3A1-209ENST00000496189 CCDC85CA6NKD9 419 aa19.44■□□□□ 0.7
SF3A1-209ENST00000496189 HSPD1P10809 573 aaKnown RBP19.44■□□□□ 0.7
SF3A1-209ENST00000496189 BCRP11274 1271 aa19.44■□□□□ 0.7
SF3A1-209ENST00000496189 GSPT1P15170 499 aaKnown RBP19.44■□□□□ 0.7
SF3A1-209ENST00000496189 RASA1P20936 1047 aa19.44■□□□□ 0.7
SF3A1-209ENST00000496189 PSMC4P43686 418 aa19.44■□□□□ 0.7
SF3A1-209ENST00000496189 FAM110CQ1W6H9 321 aa19.44■□□□□ 0.7
SF3A1-209ENST00000496189 VPS53Q5VIR6 699 aa19.44■□□□□ 0.7
SF3A1-209ENST00000496189 ANKRD13CQ8N6S4 541 aa19.44■□□□□ 0.7
SF3A1-209ENST00000496189 LPAR1Q92633 364 aa19.44■□□□□ 0.7
SF3A1-209ENST00000496189 GOPCQ9HD26 462 aa19.44■□□□□ 0.7
SF3A1-209ENST00000496189 ZMYM6O95789 1325 aa19.44■□□□□ 0.7
SF3A1-209ENST00000496189 SMIM22K7EJ46 135 aa19.43■□□□□ 0.7
SF3A1-209ENST00000496189 RAD21O60216 631 aa19.43■□□□□ 0.7
SF3A1-209ENST00000496189 PRDM1O75626 825 aa19.43■□□□□ 0.7
SF3A1-209ENST00000496189 VCAM1P19320 739 aa19.43■□□□□ 0.7
SF3A1-209ENST00000496189 ZNF589Q86UQ0 364 aaPredicted RBP19.43■□□□□ 0.7
SF3A1-209ENST00000496189 CCAR1Q8IX12 1150 aaKnown RBP19.43■□□□□ 0.7
SF3A1-209ENST00000496189 TANGO6Q9C0B7 1094 aa19.43■□□□□ 0.7
SF3A1-209ENST00000496189 TOMM22Q9NS69 142 aa19.43■□□□□ 0.7
SF3A1-209ENST00000496189 PTPN22Q9Y2R2 807 aa19.43■□□□□ 0.7
SF3A1-209ENST00000496189 TMX2Q9Y320 296 aa19.43■□□□□ 0.7
SF3A1-209ENST00000496189 RAD50Q92878 1312 aa19.43■□□□□ 0.7
SF3A1-209ENST00000496189 EEF2P13639 858 aaKnown RBP19.42■□□□□ 0.7
SF3A1-209ENST00000496189 HERVK_113P62684 666 aa19.42■□□□□ 0.7
SF3A1-209ENST00000496189 RPAP3Q9H6T3 665 aaPredicted RBP19.42■□□□□ 0.7
SF3A1-209ENST00000496189 ANAPC4Q9UJX5 808 aa19.42■□□□□ 0.7
SF3A1-209ENST00000496189 TSPY2A6NKD2 308 aa19.41■□□□□ 0.7
SF3A1-209ENST00000496189 TNPO2O14787 897 aaKnown RBP19.41■□□□□ 0.7
SF3A1-209ENST00000496189 ECM2O94769 699 aaPredicted RBP19.41■□□□□ 0.7
SF3A1-209ENST00000496189 FGAP02671 866 aa19.41■□□□□ 0.7
SF3A1-209ENST00000496189 CTDSPL2Q05D32 466 aa19.41■□□□□ 0.7
SF3A1-209ENST00000496189 COA7Q96BR5 231 aa19.41■□□□□ 0.7
SF3A1-209ENST00000496189 P2RX7Q99572 595 aaKnown RBP19.41■□□□□ 0.7
SF3A1-209ENST00000496189 VCPKMTQ9H867 229 aa19.41■□□□□ 0.7
SF3A1-209ENST00000496189 CWC22Q9HCG8 908 aaKnown RBP19.41■□□□□ 0.7
SF3A1-209ENST00000496189 NYAP2Q9P242 653 aa19.41■□□□□ 0.7
SF3A1-209ENST00000496189 CTNNA3Q9UI47 895 aa19.41■□□□□ 0.7
SF3A1-209ENST00000496189 HPS5Q9UPZ3 1129 aa19.41■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms