RNA–Protein interactions for RNA: ENST00000495485.1

HDAC3-214, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 797 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-214ENST00000495485 TTC6Q86TZ1 520 aa11.93□□□□□ -0.5
HDAC3-214ENST00000495485 ZNF444Q8N0Y2 327 aaPredicted RBP11.93□□□□□ -0.5
HDAC3-214ENST00000495485 TMEM87AQ8NBN3 555 aa11.93□□□□□ -0.5
HDAC3-214ENST00000495485 ZNF384Q8TF68 577 aa11.93□□□□□ -0.5
HDAC3-214ENST00000495485 FAM151AQ8WW52 585 aa11.93□□□□□ -0.5
HDAC3-214ENST00000495485 DDX11Q96FC9 970 aa11.93□□□□□ -0.5
HDAC3-214ENST00000495485 ZNF396Q96N95 335 aaPredicted RBP11.93□□□□□ -0.5
HDAC3-214ENST00000495485 ZSCAN10Q96SZ4 725 aaPredicted RBP11.93□□□□□ -0.5
HDAC3-214ENST00000495485 TDRD3Q9H7E2 651 aaKnown RBP11.93□□□□□ -0.5
HDAC3-214ENST00000495485 MKNK2Q9HBH9 465 aa11.93□□□□□ -0.5
HDAC3-214ENST00000495485 VEZTQ9HBM0 779 aa11.93□□□□□ -0.5
HDAC3-214ENST00000495485 USP40Q9NVE5 1235 aa11.93□□□□□ -0.5
HDAC3-214ENST00000495485 RBM28Q9NW13 759 aaKnown RBP11.93□□□□□ -0.5
HDAC3-214ENST00000495485 ORC3Q9UBD5 711 aaPredicted RBP11.93□□□□□ -0.5
HDAC3-214ENST00000495485 BRPF3Q9ULD4 1205 aa11.93□□□□□ -0.5
HDAC3-214ENST00000495485 MYH1P12882 1939 aa11.92□□□□□ -0.5
HDAC3-214ENST00000495485 NAV1Q8NEY1 1877 aa11.92□□□□□ -0.5
HDAC3-214ENST00000495485 GOLGA6L4A6NEF3 574 aa11.92□□□□□ -0.5
HDAC3-214ENST00000495485 TSPY2A6NKD2 308 aa11.92□□□□□ -0.5
HDAC3-214ENST00000495485 PPP1R12BO60237 982 aaPredicted RBP11.92□□□□□ -0.5
HDAC3-214ENST00000495485 LETM1O95202 739 aaPredicted RBP11.92□□□□□ -0.5
HDAC3-214ENST00000495485 PPP4R3BQ5MIZ7 849 aa11.92□□□□□ -0.5
HDAC3-214ENST00000495485 C12orf60Q5U649 245 aa11.92□□□□□ -0.5
HDAC3-214ENST00000495485 USP48Q86UV5 1035 aa11.92□□□□□ -0.5
HDAC3-214ENST00000495485 C2orf69Q8N8R5 385 aa11.92□□□□□ -0.5
HDAC3-214ENST00000495485 SH3RF3Q8TEJ3 882 aaPredicted RBP11.92□□□□□ -0.5
HDAC3-214ENST00000495485 TGFBRAP1Q8WUH2 860 aa11.92□□□□□ -0.5
HDAC3-214ENST00000495485 C8orf76Q96K31 380 aa11.92□□□□□ -0.5
HDAC3-214ENST00000495485 GLIS2Q9BZE0 524 aaPredicted RBP11.92□□□□□ -0.5
HDAC3-214ENST00000495485 DHX36Q9H2U1 1008 aaKnown RBP11.92□□□□□ -0.5
HDAC3-214ENST00000495485 NID2Q14112 1375 aa11.92□□□□□ -0.5
HDAC3-214ENST00000495485 TNKSO95271 1327 aa11.91□□□□□ -0.5
HDAC3-214ENST00000495485 STK36Q9NRP7 1315 aa11.91□□□□□ -0.5
HDAC3-214ENST00000495485 PCNTO95613 3336 aa11.91□□□□□ -0.5
HDAC3-214ENST00000495485 JAK2O60674 1132 aa11.91□□□□□ -0.5
HDAC3-214ENST00000495485 DDAH1O94760 285 aa11.91□□□□□ -0.5
HDAC3-214ENST00000495485 UBE2HP62256 183 aa11.91□□□□□ -0.5
HDAC3-214ENST00000495485 RASA3Q14644 834 aa11.91□□□□□ -0.5
HDAC3-214ENST00000495485 RTN1Q16799 776 aa11.91□□□□□ -0.5
HDAC3-214ENST00000495485 DCAF15Q66K64 600 aa11.91□□□□□ -0.5
HDAC3-214ENST00000495485 ARMC9Q7Z3E5 817 aa11.91□□□□□ -0.5
HDAC3-214ENST00000495485 CDCA5Q96FF9 252 aa11.91□□□□□ -0.5
HDAC3-214ENST00000495485 NCOA5Q9HCD5 579 aaKnown RBP11.91□□□□□ -0.5
HDAC3-214ENST00000495485 DDX52Q9Y2R4 599 aaKnown RBP eCLIP11.91□□□□□ -0.5
HDAC3-214ENST00000495485 ATRNL1Q5VV63 1379 aa11.91□□□□□ -0.5
HDAC3-214ENST00000495485 ROBO3Q96MS0 1386 aa11.91□□□□□ -0.5
HDAC3-214ENST00000495485 TCHHQ07283 1943 aa11.9□□□□□ -0.5
HDAC3-214ENST00000495485 CLRN2A0PK11 232 aa11.9□□□□□ -0.5
HDAC3-214ENST00000495485 GOLGA6L3A6NEY3 463 aa11.9□□□□□ -0.5
HDAC3-214ENST00000495485 CELF2O95319 508 aaKnown RBP11.9□□□□□ -0.5
HDAC3-214ENST00000495485 IFNAR1P17181 557 aa11.9□□□□□ -0.5
HDAC3-214ENST00000495485 KIF5BP33176 963 aa11.9□□□□□ -0.5
HDAC3-214ENST00000495485 DEKP35659 375 aaKnown RBP11.9□□□□□ -0.5
HDAC3-214ENST00000495485 RHBDL3P58872 404 aa11.9□□□□□ -0.5
HDAC3-214ENST00000495485 GNL2Q13823 731 aaKnown RBP11.9□□□□□ -0.5
HDAC3-214ENST00000495485 COL9A3Q14050 684 aaPredicted RBP11.9□□□□□ -0.5
HDAC3-214ENST00000495485 SAFBQ15424 915 aaKnown RBP eCLIP11.9□□□□□ -0.5
HDAC3-214ENST00000495485 MAP3K11Q16584 847 aa11.9□□□□□ -0.5
HDAC3-214ENST00000495485 BRAPQ7Z569 592 aa11.9□□□□□ -0.5
HDAC3-214ENST00000495485 MICU3Q86XE3 530 aa11.9□□□□□ -0.5
HDAC3-214ENST00000495485 DGKHQ86XP1 1220 aa11.9□□□□□ -0.5
HDAC3-214ENST00000495485 ZNF654Q8IZM8 581 aa11.9□□□□□ -0.5
HDAC3-214ENST00000495485 FANCBQ8NB91 859 aa11.9□□□□□ -0.5
HDAC3-214ENST00000495485 CTCFLQ8NI51 663 aaPredicted RBP11.9□□□□□ -0.5
HDAC3-214ENST00000495485 GBA2Q9HCG7 927 aaPredicted RBP11.9□□□□□ -0.5
HDAC3-214ENST00000495485 TCP11L1Q9NUJ3 509 aa11.9□□□□□ -0.5
HDAC3-214ENST00000495485 RBM27Q9P2N5 1060 aaKnown RBP11.9□□□□□ -0.5
HDAC3-214ENST00000495485 MKRN1Q9UHC7 482 aaKnown RBP11.9□□□□□ -0.5
HDAC3-214ENST00000495485 HPS5Q9UPZ3 1129 aa11.9□□□□□ -0.5
HDAC3-214ENST00000495485 ELP1O95163 1332 aa11.89□□□□□ -0.51
HDAC3-214ENST00000495485 WDHD1O75717 1129 aaPredicted RBP11.89□□□□□ -0.51
HDAC3-214ENST00000495485 CTDNEP1O95476 244 aa11.89□□□□□ -0.51
HDAC3-214ENST00000495485 HLA-DOAP06340 250 aa11.89□□□□□ -0.51
HDAC3-214ENST00000495485 TSPY3P0CV98 308 aa11.89□□□□□ -0.51
HDAC3-214ENST00000495485 TSPY8P0CW00 308 aa11.89□□□□□ -0.51
HDAC3-214ENST00000495485 ECE1P42892 770 aa11.89□□□□□ -0.51
HDAC3-214ENST00000495485 IREB2P48200 963 aaKnown RBP11.89□□□□□ -0.51
HDAC3-214ENST00000495485 GNAQP50148 359 aa11.89□□□□□ -0.51
HDAC3-214ENST00000495485 SEC23AQ15436 765 aa11.89□□□□□ -0.51
HDAC3-214ENST00000495485 REM2Q8IYK8 340 aaPredicted RBP11.89□□□□□ -0.51
HDAC3-214ENST00000495485 STK11IPQ8N1F8 1099 aa11.89□□□□□ -0.51
HDAC3-214ENST00000495485 SPATA32Q96LK8 384 aa11.89□□□□□ -0.51
HDAC3-214ENST00000495485 MAP3K14Q99558 947 aa11.89□□□□□ -0.51
HDAC3-214ENST00000495485 KAT14Q9H8E8 782 aa11.89□□□□□ -0.51
HDAC3-214ENST00000495485 SWAP70Q9UH65 585 aa11.89□□□□□ -0.51
HDAC3-214ENST00000495485 TLL2Q9Y6L7 1015 aa11.89□□□□□ -0.51
HDAC3-214ENST00000495485 RASSF10A6NK89 507 aa11.88□□□□□ -0.51
HDAC3-214ENST00000495485 TCP10L2B9ZVM9 353 aa11.88□□□□□ -0.51
HDAC3-214ENST00000495485 ADM5C9JUS6 153 aa11.88□□□□□ -0.51
HDAC3-214ENST00000495485 TBC1D12O60347 775 aa11.88□□□□□ -0.51
HDAC3-214ENST00000495485 DEXIO95424 95 aa11.88□□□□□ -0.51
HDAC3-214ENST00000495485 FMNL1O95466 1100 aaPredicted RBP11.88□□□□□ -0.51
HDAC3-214ENST00000495485 DNM1Q05193 864 aaKnown RBP11.88□□□□□ -0.51
HDAC3-214ENST00000495485 SAPCD2Q86UD0 394 aa11.88□□□□□ -0.51
HDAC3-214ENST00000495485 MAPKAPK5Q8IW41 473 aa11.88□□□□□ -0.51
HDAC3-214ENST00000495485 FBXO18Q8NFZ0 1043 aa11.88□□□□□ -0.51
HDAC3-214ENST00000495485 NUP133Q8WUM0 1156 aa11.88□□□□□ -0.51
HDAC3-214ENST00000495485 ZKSCAN3Q9BRR0 538 aa11.88□□□□□ -0.51
HDAC3-214ENST00000495485 ALG1Q9BT22 464 aa11.88□□□□□ -0.51
HDAC3-214ENST00000495485 GZF1Q9H116 711 aaPredicted RBP11.88□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms