RNA–Protein interactions for RNA: ENST00000495039.1

VPS50-219, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 1,115 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-219ENST00000495039 ETV2O00321 342 aaPredicted RBP7.85□□□□□ -1.15
VPS50-219ENST00000495039 ERVFC1P60507 584 aa7.85□□□□□ -1.15
VPS50-219ENST00000495039 CREG2Q8IUH2 290 aa7.85□□□□□ -1.15
VPS50-219ENST00000495039 FRMD6Q96NE9 622 aa7.85□□□□□ -1.15
VPS50-219ENST00000495039 SMG5Q9UPR3 1016 aaKnown RBP7.85□□□□□ -1.15
VPS50-219ENST00000495039 GFRA2O00451 464 aa7.84□□□□□ -1.15
VPS50-219ENST00000495039 PGRP06401 933 aa7.84□□□□□ -1.15
VPS50-219ENST00000495039 INHBBP09529 407 aa7.84□□□□□ -1.15
VPS50-219ENST00000495039 SRFP11831 508 aa7.84□□□□□ -1.15
VPS50-219ENST00000495039 KCNN1Q92952 543 aa7.84□□□□□ -1.15
VPS50-219ENST00000495039 DPH2Q9BQC3 489 aaPredicted RBP7.84□□□□□ -1.15
VPS50-219ENST00000495039 TRIT1Q9H3H1 467 aaKnown RBP7.84□□□□□ -1.15
VPS50-219ENST00000495039 TJP2Q9UDY2 1190 aa7.84□□□□□ -1.15
VPS50-219ENST00000495039 NUAK1O60285 661 aa7.83□□□□□ -1.16
VPS50-219ENST00000495039 LINC00310P59036 64 aa7.83□□□□□ -1.16
VPS50-219ENST00000495039 SEPT6Q14141 434 aa7.83□□□□□ -1.16
VPS50-219ENST00000495039 CCDC85BQ15834 202 aaPredicted RBP7.83□□□□□ -1.16
VPS50-219ENST00000495039 SLC6A19Q695T7 634 aa7.83□□□□□ -1.16
VPS50-219ENST00000495039 TMEM87BQ96K49 555 aa7.83□□□□□ -1.16
VPS50-219ENST00000495039 ADAMTS10Q9H324 1103 aa7.83□□□□□ -1.16
VPS50-219ENST00000495039 TPP2P29144 1249 aaPredicted RBP7.82□□□□□ -1.16
VPS50-219ENST00000495039 PDE4BQ07343 736 aa7.82□□□□□ -1.16
VPS50-219ENST00000495039 GAB4Q2WGN9 574 aa7.81□□□□□ -1.16
VPS50-219ENST00000495039 LCE5AQ5TCM9 118 aa7.81□□□□□ -1.16
VPS50-219ENST00000495039 PDZD8Q8NEN9 1154 aa7.81□□□□□ -1.16
VPS50-219ENST00000495039 Q96M66 194 aa7.81□□□□□ -1.16
VPS50-219ENST00000495039 RNF32Q9H0A6 362 aa7.81□□□□□ -1.16
VPS50-219ENST00000495039 DUSP15Q9H1R2 295 aaPredicted RBP7.81□□□□□ -1.16
VPS50-219ENST00000495039 GPATCH2Q9NW75 528 aa7.81□□□□□ -1.16
VPS50-219ENST00000495039 DUSP13Q9UII6 198 aa7.81□□□□□ -1.16
VPS50-219ENST00000495039 PCDHB5Q9Y5E4 795 aa7.81□□□□□ -1.16
VPS50-219ENST00000495039 WASH4PA8MWX3 477 aa7.8□□□□□ -1.16
VPS50-219ENST00000495039 EIF4BP23588 611 aaKnown RBP7.8□□□□□ -1.16
VPS50-219ENST00000495039 TRHRP34981 398 aaPredicted RBP7.8□□□□□ -1.16
VPS50-219ENST00000495039 CTSWP56202 376 aa7.8□□□□□ -1.16
VPS50-219ENST00000495039 IRF2BP1Q8IU81 584 aa7.8□□□□□ -1.16
VPS50-219ENST00000495039 LILRA2Q8N149 483 aa7.8□□□□□ -1.16
VPS50-219ENST00000495039 DNAJB8Q8NHS0 232 aa7.8□□□□□ -1.16
VPS50-219ENST00000495039 MIR1-1HGQ9H1L0 117 aa7.8□□□□□ -1.16
VPS50-219ENST00000495039 SLC6A17Q9H1V8 727 aa7.8□□□□□ -1.16
VPS50-219ENST00000495039 RBAK-RBAKDNI3L0D1 243 aa7.79□□□□□ -1.16
VPS50-219ENST00000495039 LDHBP07195 334 aaKnown RBP7.79□□□□□ -1.16
VPS50-219ENST00000495039 P4HBP07237 508 aaKnown RBP7.79□□□□□ -1.16
VPS50-219ENST00000495039 GNA15P30679 374 aa7.79□□□□□ -1.16
VPS50-219ENST00000495039 EGR3Q06889 387 aa7.79□□□□□ -1.16
VPS50-219ENST00000495039 AGMOQ6ZNB7 445 aa7.79□□□□□ -1.16
VPS50-219ENST00000495039 MCATQ8IVS2 390 aaKnown RBP7.79□□□□□ -1.16
VPS50-219ENST00000495039 OXR1Q8N573 874 aa7.79□□□□□ -1.16
VPS50-219ENST00000495039 GPR62Q9BZJ7 368 aa7.79□□□□□ -1.16
VPS50-219ENST00000495039 ADAM30Q9UKF2 790 aa7.79□□□□□ -1.16
VPS50-219ENST00000495039 CEP131Q9UPN4 1083 aa7.79□□□□□ -1.16
VPS50-219ENST00000495039 SYTL4Q96C24 671 aaPredicted RBP7.78□□□□□ -1.16
VPS50-219ENST00000495039 KRTAP4-5Q9BYR2 181 aa7.78□□□□□ -1.16
VPS50-219ENST00000495039 KCNH3Q9ULD8 1083 aa7.78□□□□□ -1.16
VPS50-219ENST00000495039 FITM1A5D6W6 292 aa7.77□□□□□ -1.17
VPS50-219ENST00000495039 ZGLP1P0C6A0 271 aa7.77□□□□□ -1.17
VPS50-219ENST00000495039 BUD31P41223 144 aaPredicted RBP7.77□□□□□ -1.17
VPS50-219ENST00000495039 LIG3P49916 1009 aa7.77□□□□□ -1.17
VPS50-219ENST00000495039 TSNAXIP1Q2TAA8 658 aa7.77□□□□□ -1.17
VPS50-219ENST00000495039 TSPYL5Q86VY4 417 aaPredicted RBP7.77□□□□□ -1.17
VPS50-219ENST00000495039 DHX38Q92620 1227 aaKnown RBP7.77□□□□□ -1.17
VPS50-219ENST00000495039 IRF2BPLQ9H1B7 796 aa7.77□□□□□ -1.17
VPS50-219ENST00000495039 C19orf44Q9H6X5 657 aa7.77□□□□□ -1.17
VPS50-219ENST00000495039 SP110Q9HB58 689 aa7.77□□□□□ -1.17
VPS50-219ENST00000495039 CWC22Q9HCG8 908 aaKnown RBP7.77□□□□□ -1.17
VPS50-219ENST00000495039 LTKP29376 864 aa7.76□□□□□ -1.17
VPS50-219ENST00000495039 RPL6Q02878 288 aaKnown RBP7.76□□□□□ -1.17
VPS50-219ENST00000495039 NR0B2Q15466 257 aa7.76□□□□□ -1.17
VPS50-219ENST00000495039 DIEXFQ68CQ4 756 aaKnown RBP7.76□□□□□ -1.17
VPS50-219ENST00000495039 DTWD2Q8NBA8 298 aa7.76□□□□□ -1.17
VPS50-219ENST00000495039 CYB5D2Q8WUJ1 264 aa7.76□□□□□ -1.17
VPS50-219ENST00000495039 ACSF2Q96CM8 615 aaPredicted RBP7.76□□□□□ -1.17
VPS50-219ENST00000495039 MCOLN1Q9GZU1 580 aa7.76□□□□□ -1.17
VPS50-219ENST00000495039 PEX10O60683 326 aa7.75□□□□□ -1.17
VPS50-219ENST00000495039 SEMA7AO75326 666 aa7.75□□□□□ -1.17
VPS50-219ENST00000495039 MAP3K11Q16584 847 aa7.75□□□□□ -1.17
VPS50-219ENST00000495039 PPP1R13LQ8WUF5 828 aa7.75□□□□□ -1.17
VPS50-219ENST00000495039 TFE3P19532 575 aaPredicted RBP7.74□□□□□ -1.17
VPS50-219ENST00000495039 HOXA5P20719 270 aa7.74□□□□□ -1.17
VPS50-219ENST00000495039 DLG4P78352 724 aa7.74□□□□□ -1.17
VPS50-219ENST00000495039 ZNF605Q86T29 641 aa7.74□□□□□ -1.17
VPS50-219ENST00000495039 BAHD1Q8TBE0 780 aaPredicted RBP7.74□□□□□ -1.17
VPS50-219ENST00000495039 INTS4Q96HW7 963 aaKnown RBP7.74□□□□□ -1.17
VPS50-219ENST00000495039 YBX2Q9Y2T7 364 aaKnown RBP7.74□□□□□ -1.17
VPS50-219ENST00000495039 PCDHA11Q9Y5I1 949 aa7.74□□□□□ -1.17
VPS50-219ENST00000495039 IVNS1ABPQ9Y6Y0 642 aa7.74□□□□□ -1.17
VPS50-219ENST00000495039 PRPF40AO75400 957 aaKnown RBP7.73□□□□□ -1.17
VPS50-219ENST00000495039 RLBP1P12271 317 aa7.73□□□□□ -1.17
VPS50-219ENST00000495039 YARSP54577 528 aaKnown RBP7.73□□□□□ -1.17
VPS50-219ENST00000495039 CHRNEQ04844 493 aa7.73□□□□□ -1.17
VPS50-219ENST00000495039 TIGD5Q53EQ6 642 aa7.73□□□□□ -1.17
VPS50-219ENST00000495039 SPPL2CQ8IUH8 684 aa7.73□□□□□ -1.17
VPS50-219ENST00000495039 FAM13CQ8NE31 585 aa7.73□□□□□ -1.17
VPS50-219ENST00000495039 RNF141Q8WVD5 230 aa7.73□□□□□ -1.17
VPS50-219ENST00000495039 KRTAP9-3Q9BYQ3 159 aa7.73□□□□□ -1.17
VPS50-219ENST00000495039 PARD6AQ9NPB6 346 aa7.73□□□□□ -1.17
VPS50-219ENST00000495039 AK5Q9Y6K8 562 aa7.73□□□□□ -1.17
VPS50-219ENST00000495039 MYOCOSA0A1B0GUC4 107 aa7.72□□□□□ -1.17
VPS50-219ENST00000495039 DUSP4Q13115 394 aa7.72□□□□□ -1.17
VPS50-219ENST00000495039 TMEM132EQ6IEE7 984 aa7.72□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms