RNA–Protein interactions for RNA: ENST00000493475.2

COL6A3-213, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 669 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-213ENST00000493475 DDRGK1Q96HY6 314 aa14.04□□□□□ -0.16
COL6A3-213ENST00000493475 P2RX7Q99572 595 aaKnown RBP14.04□□□□□ -0.16
COL6A3-213ENST00000493475 PAGR1Q9BTK6 254 aa14.04□□□□□ -0.16
COL6A3-213ENST00000493475 IVNS1ABPQ9Y6Y0 642 aa14.04□□□□□ -0.16
COL6A3-213ENST00000493475 PHIPQ8WWQ0 1821 aa14.04□□□□□ -0.16
COL6A3-213ENST00000493475 MAGEB6P1A0A0J9YX57 407 aa14.03□□□□□ -0.16
COL6A3-213ENST00000493475 GALR2O43603 387 aaPredicted RBP14.03□□□□□ -0.16
COL6A3-213ENST00000493475 IFIT2P09913 472 aaKnown RBP14.03□□□□□ -0.16
COL6A3-213ENST00000493475 CYP2B6P20813 491 aa14.03□□□□□ -0.16
COL6A3-213ENST00000493475 ERVK-9P63128 1117 aa14.03□□□□□ -0.16
COL6A3-213ENST00000493475 ERVK-24P63145 666 aa14.03□□□□□ -0.16
COL6A3-213ENST00000493475 PLEKHH3Q7Z736 793 aa14.03□□□□□ -0.16
COL6A3-213ENST00000493475 ADGRA1Q86SQ6 560 aa14.03□□□□□ -0.16
COL6A3-213ENST00000493475 EAF2Q96CJ1 260 aaPredicted RBP14.03□□□□□ -0.16
COL6A3-213ENST00000493475 KIF1BPQ96EK5 621 aa14.03□□□□□ -0.16
COL6A3-213ENST00000493475 PAWRQ96IZ0 340 aaKnown RBP14.03□□□□□ -0.16
COL6A3-213ENST00000493475 RABGAP1Q9Y3P9 1069 aa14.03□□□□□ -0.16
COL6A3-213ENST00000493475 ATAD5Q96QE3 1844 aa14.02□□□□□ -0.16
COL6A3-213ENST00000493475 ZBED9Q6R2W3 1325 aa14.02□□□□□ -0.17
COL6A3-213ENST00000493475 DYNLL1P63167 89 aaKnown RBP14.02□□□□□ -0.17
COL6A3-213ENST00000493475 RRP1BQ14684 758 aaKnown RBP14.02□□□□□ -0.17
COL6A3-213ENST00000493475 WDR78Q5VTH9 848 aa14.02□□□□□ -0.17
COL6A3-213ENST00000493475 TATDN1Q6P1N9 297 aa14.02□□□□□ -0.17
COL6A3-213ENST00000493475 RPAP2Q8IXW5 612 aaPredicted RBP14.02□□□□□ -0.17
COL6A3-213ENST00000493475 C12orf42Q96LP6 360 aa14.02□□□□□ -0.17
COL6A3-213ENST00000493475 APBA2Q99767 749 aa14.02□□□□□ -0.17
COL6A3-213ENST00000493475 DDX24Q9GZR7 859 aaKnown RBP eCLIP14.02□□□□□ -0.17
COL6A3-213ENST00000493475 KIAA1683Q9H0B3 1180 aa14.02□□□□□ -0.17
COL6A3-213ENST00000493475 C11orf49Q9H6J7 331 aa14.02□□□□□ -0.17
COL6A3-213ENST00000493475 SH2D4AQ9H788 454 aa14.02□□□□□ -0.17
COL6A3-213ENST00000493475 TLR7Q9NYK1 1049 aaKnown RBP14.02□□□□□ -0.17
COL6A3-213ENST00000493475 RBM27Q9P2N5 1060 aaKnown RBP14.02□□□□□ -0.17
COL6A3-213ENST00000493475 GJD2Q9UKL4 321 aa14.02□□□□□ -0.17
COL6A3-213ENST00000493475 DDX19BQ9UMR2 479 aa14.02□□□□□ -0.17
COL6A3-213ENST00000493475 EXOC6BQ9Y2D4 811 aa14.02□□□□□ -0.17
COL6A3-213ENST00000493475 TRIOBPQ9H2D6 2365 aa14.02□□□□□ -0.17
COL6A3-213ENST00000493475 SLC9C2Q5TAH2 1124 aa14.01□□□□□ -0.17
COL6A3-213ENST00000493475 MFSD14CQ5VZR4 134 aa14.01□□□□□ -0.17
COL6A3-213ENST00000493475 GPR142Q7Z601 462 aa14.01□□□□□ -0.17
COL6A3-213ENST00000493475 PPIL4Q8WUA2 492 aaKnown RBP eCLIP14.01□□□□□ -0.17
COL6A3-213ENST00000493475 DNAJC18Q9H819 358 aa14.01□□□□□ -0.17
COL6A3-213ENST00000493475 MPHOSPH10O00566 681 aaKnown RBP14□□□□□ -0.17
COL6A3-213ENST00000493475 MSCO60682 206 aa14□□□□□ -0.17
COL6A3-213ENST00000493475 RAB11FIP3O75154 756 aa14□□□□□ -0.17
COL6A3-213ENST00000493475 ZYXQ15942 572 aaKnown RBP14□□□□□ -0.17
COL6A3-213ENST00000493475 DIEXFQ68CQ4 756 aaKnown RBP14□□□□□ -0.17
COL6A3-213ENST00000493475 RHPN1Q8TCX5 695 aa14□□□□□ -0.17
COL6A3-213ENST00000493475 TRIB2Q92519 343 aa14□□□□□ -0.17
COL6A3-213ENST00000493475 MCM9Q9NXL9 1143 aa14□□□□□ -0.17
COL6A3-213ENST00000493475 SLC5A4Q9NY91 659 aa14□□□□□ -0.17
COL6A3-213ENST00000493475 RBPJLQ9UBG7 517 aa14□□□□□ -0.17
COL6A3-213ENST00000493475 SWAP70Q9UH65 585 aa14□□□□□ -0.17
COL6A3-213ENST00000493475 C7orf61Q8IZ16 206 aa13.99□□□□□ -0.17
COL6A3-213ENST00000493475 DNAJC2Q99543 621 aaKnown RBP13.99□□□□□ -0.17
COL6A3-213ENST00000493475 EMILIN3Q9NT22 766 aa13.99□□□□□ -0.17
COL6A3-213ENST00000493475 HOXC10Q9NYD6 342 aa13.99□□□□□ -0.17
COL6A3-213ENST00000493475 OGDHLQ9ULD0 1010 aa13.99□□□□□ -0.17
COL6A3-213ENST00000493475 SLC15A5A6NIM6 579 aa13.98□□□□□ -0.17
COL6A3-213ENST00000493475 RLBP1P12271 317 aa13.98□□□□□ -0.17
COL6A3-213ENST00000493475 PDE6AP16499 860 aa13.98□□□□□ -0.17
COL6A3-213ENST00000493475 VCAM1P19320 739 aa13.98□□□□□ -0.17
COL6A3-213ENST00000493475 MAP2K5Q13163 448 aa13.98□□□□□ -0.17
COL6A3-213ENST00000493475 MAP3K21Q5TCX8 1036 aa13.98□□□□□ -0.17
COL6A3-213ENST00000493475 ZSCAN25Q6NSZ9 544 aa13.98□□□□□ -0.17
COL6A3-213ENST00000493475 CATSPERGQ6ZRH7 1159 aa13.98□□□□□ -0.17
COL6A3-213ENST00000493475 EDC3Q96F86 508 aaKnown RBP13.98□□□□□ -0.17
COL6A3-213ENST00000493475 ARHGEF10LQ9HCE6 1279 aa13.98□□□□□ -0.17
COL6A3-213ENST00000493475 TXNRD2Q9NNW7 524 aa13.98□□□□□ -0.17
COL6A3-213ENST00000493475 IL1RAPL2Q9NP60 686 aa13.98□□□□□ -0.17
COL6A3-213ENST00000493475 FOCADQ5VW36 1801 aa13.97□□□□□ -0.17
COL6A3-213ENST00000493475 POTEB2H3BUK9 544 aa13.97□□□□□ -0.17
COL6A3-213ENST00000493475 APBB1O00213 710 aa13.97□□□□□ -0.17
COL6A3-213ENST00000493475 GOLIM4O00461 696 aa13.97□□□□□ -0.17
COL6A3-213ENST00000493475 ATP2B2Q01814 1243 aa13.97□□□□□ -0.17
COL6A3-213ENST00000493475 LBX2Q6XYB7 198 aa13.97□□□□□ -0.17
COL6A3-213ENST00000493475 TMEM179Q6ZVK1 233 aa13.97□□□□□ -0.17
COL6A3-213ENST00000493475 MB21D1Q8N884 522 aa13.97□□□□□ -0.17
COL6A3-213ENST00000493475 PANK1Q8TE04 598 aa13.97□□□□□ -0.17
COL6A3-213ENST00000493475 LPAR1Q92633 364 aa13.97□□□□□ -0.17
COL6A3-213ENST00000493475 RIOK1Q9BRS2 568 aaKnown RBP13.97□□□□□ -0.17
COL6A3-213ENST00000493475 TANGO6Q9C0B7 1094 aa13.97□□□□□ -0.17
COL6A3-213ENST00000493475 BCL11AQ9H165 835 aa13.97□□□□□ -0.17
COL6A3-213ENST00000493475 RPAP3Q9H6T3 665 aaPredicted RBP13.97□□□□□ -0.17
COL6A3-213ENST00000493475 ANTXR1Q9H6X2 564 aa13.97□□□□□ -0.17
COL6A3-213ENST00000493475 ZNF532Q9HCE3 1301 aa13.96□□□□□ -0.17
COL6A3-213ENST00000493475 STRNO43815 780 aa13.96□□□□□ -0.17
COL6A3-213ENST00000493475 BMP8BP34820 402 aa13.96□□□□□ -0.17
COL6A3-213ENST00000493475 JAG1P78504 1218 aa13.96□□□□□ -0.17
COL6A3-213ENST00000493475 CACNB2Q08289 660 aaPredicted RBP13.96□□□□□ -0.17
COL6A3-213ENST00000493475 COG2Q14746 738 aa13.96□□□□□ -0.17
COL6A3-213ENST00000493475 MORN1Q5T089 497 aa13.96□□□□□ -0.17
COL6A3-213ENST00000493475 DIS3LQ8TF46 1054 aaKnown RBP13.96□□□□□ -0.17
COL6A3-213ENST00000493475 CCDC17Q96LX7 622 aa13.96□□□□□ -0.17
COL6A3-213ENST00000493475 PORCNQ9H237 461 aa13.96□□□□□ -0.17
COL6A3-213ENST00000493475 ATP8A2Q9NTI2 1148 aa13.96□□□□□ -0.17
COL6A3-213ENST00000493475 PRKAG2Q9UGJ0 569 aa13.96□□□□□ -0.17
COL6A3-213ENST00000493475 STAP2Q9UGK3 403 aa13.96□□□□□ -0.17
COL6A3-213ENST00000493475 PTPREP23469 700 aa13.95□□□□□ -0.18
COL6A3-213ENST00000493475 CNGA1P29973 690 aa13.95□□□□□ -0.18
COL6A3-213ENST00000493475 SHMT1P34896 483 aa13.95□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms