RNA–Protein interactions for RNA: ENST00000490516.5

EXOSC3-207, Transcript of exosome component 3, humanhuman

TSL 2

Gene EXOSC3, Length 773 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
EXOSC3-207ENST00000490516 PBX4Q9BYU1 374 aa17.05■□□□□ 0.32
EXOSC3-207ENST00000490516 EMILIN3Q9NT22 766 aa17.05■□□□□ 0.32
EXOSC3-207ENST00000490516 RABGAP1Q9Y3P9 1069 aa17.05■□□□□ 0.32
EXOSC3-207ENST00000490516 KIAA0355O15063 1070 aa17.04■□□□□ 0.32
EXOSC3-207ENST00000490516 ASNSP08243 561 aa17.04■□□□□ 0.32
EXOSC3-207ENST00000490516 CCNA1P78396 465 aa17.04■□□□□ 0.32
EXOSC3-207ENST00000490516 MECOMQ03112 1051 aa17.04■□□□□ 0.32
EXOSC3-207ENST00000490516 GRB14Q14449 540 aa17.04■□□□□ 0.32
EXOSC3-207ENST00000490516 HERC5Q9UII4 1024 aaKnown RBP17.04■□□□□ 0.32
EXOSC3-207ENST00000490516 IVNS1ABPQ9Y6Y0 642 aa17.04■□□□□ 0.32
EXOSC3-207ENST00000490516 MUC6Q6W4X9 2439 aa17.04■□□□□ 0.32
EXOSC3-207ENST00000490516 GDF11O95390 407 aa17.03■□□□□ 0.32
EXOSC3-207ENST00000490516 ADORA1P30542 326 aa17.03■□□□□ 0.32
EXOSC3-207ENST00000490516 TFF2Q03403 129 aa17.03■□□□□ 0.32
EXOSC3-207ENST00000490516 DDX10Q13206 875 aaKnown RBP17.03■□□□□ 0.32
EXOSC3-207ENST00000490516 RASGRF1Q13972 1273 aa17.03■□□□□ 0.32
EXOSC3-207ENST00000490516 CCDC129Q6ZRS4 1044 aa17.03■□□□□ 0.32
EXOSC3-207ENST00000490516 BUD13Q9BRD0 619 aaKnown RBP eCLIP17.03■□□□□ 0.32
EXOSC3-207ENST00000490516 SIL1Q9H173 461 aa17.03■□□□□ 0.32
EXOSC3-207ENST00000490516 CDK5RAP2Q96SN8 1893 aa17.03■□□□□ 0.32
EXOSC3-207ENST00000490516 SEPT4O43236 478 aa17.02■□□□□ 0.32
EXOSC3-207ENST00000490516 PQBP1O60828 265 aaKnown RBP17.02■□□□□ 0.32
EXOSC3-207ENST00000490516 KCNQ1P51787 676 aa17.02■□□□□ 0.32
EXOSC3-207ENST00000490516 FAM47AQ5JRC9 791 aa17.02■□□□□ 0.32
EXOSC3-207ENST00000490516 PRAMEF19Q5SWL8 479 aa17.02■□□□□ 0.32
EXOSC3-207ENST00000490516 CCDC102BQ68D86 513 aa17.02■□□□□ 0.32
EXOSC3-207ENST00000490516 TMEM39AQ9NV64 488 aa17.02■□□□□ 0.32
EXOSC3-207ENST00000490516 CXXC1Q9P0U4 656 aaPredicted RBP17.02■□□□□ 0.32
EXOSC3-207ENST00000490516 ZNF236Q9UL36 1845 aa17.01■□□□□ 0.31
EXOSC3-207ENST00000490516 TMEM31Q5JXX7 168 aa17.01■□□□□ 0.31
EXOSC3-207ENST00000490516 SPTY2D1Q68D10 685 aaPredicted RBP17.01■□□□□ 0.31
EXOSC3-207ENST00000490516 DNAJC18Q9H819 358 aa17.01■□□□□ 0.31
EXOSC3-207ENST00000490516 BTBD7Q9P203 1132 aa17.01■□□□□ 0.31
EXOSC3-207ENST00000490516 CEP126Q9P2H0 1117 aa17.01■□□□□ 0.31
EXOSC3-207ENST00000490516 PHF24Q9UPV7 400 aa17.01■□□□□ 0.31
EXOSC3-207ENST00000490516 CHD7Q9P2D1 2997 aa17.01■□□□□ 0.31
EXOSC3-207ENST00000490516 ZYXQ15942 572 aaKnown RBP17■□□□□ 0.31
EXOSC3-207ENST00000490516 OLFML2BQ68BL8 750 aa17■□□□□ 0.31
EXOSC3-207ENST00000490516 USP17L2Q6R6M4 530 aa17■□□□□ 0.31
EXOSC3-207ENST00000490516 ERICH6Q7L0X2 663 aa17■□□□□ 0.31
EXOSC3-207ENST00000490516 DPP9Q86TI2 863 aa17■□□□□ 0.31
EXOSC3-207ENST00000490516 SNX27Q96L92 541 aa17■□□□□ 0.31
EXOSC3-207ENST00000490516 PI4KBQ9UBF8 816 aa17■□□□□ 0.31
EXOSC3-207ENST00000490516 ZBTB21Q9ULJ3 1066 aa17■□□□□ 0.31
EXOSC3-207ENST00000490516 USP17L15C9J2P7 530 aa16.99■□□□□ 0.31
EXOSC3-207ENST00000490516 USP17L13C9JLJ4 530 aa16.99■□□□□ 0.31
EXOSC3-207ENST00000490516 USP17L11C9JVI0 530 aa16.99■□□□□ 0.31
EXOSC3-207ENST00000490516 USP17L18D6R9N7 530 aa16.99■□□□□ 0.31
EXOSC3-207ENST00000490516 USP17L22D6RA61 530 aa16.99■□□□□ 0.31
EXOSC3-207ENST00000490516 USP17L17D6RBQ6 530 aa16.99■□□□□ 0.31
EXOSC3-207ENST00000490516 USP17L19D6RCP7 530 aa16.99■□□□□ 0.31
EXOSC3-207ENST00000490516 USP17L20D6RJB6 530 aa16.99■□□□□ 0.31
EXOSC3-207ENST00000490516 USP17L24Q0WX57 530 aa16.99■□□□□ 0.31
EXOSC3-207ENST00000490516 C16orf59Q7L2K0 433 aa16.99■□□□□ 0.31
EXOSC3-207ENST00000490516 TEX11Q8IYF3 940 aa16.99■□□□□ 0.31
EXOSC3-207ENST00000490516 FOCADQ5VW36 1801 aa16.98■□□□□ 0.31
EXOSC3-207ENST00000490516 ZNFX1Q9P2E3 1918 aaKnown RBP16.98■□□□□ 0.31
EXOSC3-207ENST00000490516 ADORA2AP29274 412 aa16.98■□□□□ 0.31
EXOSC3-207ENST00000490516 FAAP100Q0VG06 881 aa16.98■□□□□ 0.31
EXOSC3-207ENST00000490516 MICALL1Q8N3F8 863 aa16.98■□□□□ 0.31
EXOSC3-207ENST00000490516 SLC44A5Q8NCS7 719 aa16.98■□□□□ 0.31
EXOSC3-207ENST00000490516 SH3RF3Q8TEJ3 882 aaPredicted RBP16.98■□□□□ 0.31
EXOSC3-207ENST00000490516 USP44Q9H0E7 712 aa16.98■□□□□ 0.31
EXOSC3-207ENST00000490516 TSPYL2Q9H2G4 693 aaPredicted RBP16.98■□□□□ 0.31
EXOSC3-207ENST00000490516 C11orf16Q9NQ32 467 aa16.98■□□□□ 0.31
EXOSC3-207ENST00000490516 PDS5AQ29RF7 1337 aaKnown RBP16.97■□□□□ 0.31
EXOSC3-207ENST00000490516 LRRC37A2A6NM11 1700 aa16.97■□□□□ 0.31
EXOSC3-207ENST00000490516 FAM86C2PA6NEL3 165 aa16.97■□□□□ 0.31
EXOSC3-207ENST00000490516 ZBTB22O15209 634 aa16.97■□□□□ 0.31
EXOSC3-207ENST00000490516 MAP4K4O95819 1239 aaPredicted RBP16.97■□□□□ 0.31
EXOSC3-207ENST00000490516 TMEM240Q5SV17 173 aa16.97■□□□□ 0.31
EXOSC3-207ENST00000490516 RASIP1Q5U651 963 aa16.97■□□□□ 0.31
EXOSC3-207ENST00000490516 CATSPERGQ6ZRH7 1159 aa16.97■□□□□ 0.31
EXOSC3-207ENST00000490516 NSUN4Q96CB9 384 aaKnown RBP16.97■□□□□ 0.31
EXOSC3-207ENST00000490516 PRKRIP1Q9H875 184 aaPredicted RBP16.97■□□□□ 0.31
EXOSC3-207ENST00000490516 A0A1W2PQ45 241 aaPredicted RBP16.96■□□□□ 0.31
EXOSC3-207ENST00000490516 A0A1W2PQY0 241 aa16.96■□□□□ 0.31
EXOSC3-207ENST00000490516 COBLO75128 1261 aa16.96■□□□□ 0.31
EXOSC3-207ENST00000490516 CIAO1O76071 339 aa16.96■□□□□ 0.31
EXOSC3-207ENST00000490516 TIMP1P01033 207 aa16.96■□□□□ 0.31
EXOSC3-207ENST00000490516 LDHCP07864 332 aa16.96■□□□□ 0.31
EXOSC3-207ENST00000490516 KHSRPQ92945 711 aaKnown RBP eCLIP16.96■□□□□ 0.31
EXOSC3-207ENST00000490516 DHX36Q9H2U1 1008 aaKnown RBP16.96■□□□□ 0.31
EXOSC3-207ENST00000490516 NKX2-4Q9H2Z4 354 aa16.96■□□□□ 0.31
EXOSC3-207ENST00000490516 XPNPEP3Q9NQH7 507 aa16.96■□□□□ 0.31
EXOSC3-207ENST00000490516 SPDYE16A6NNV3 312 aaPredicted RBP16.95■□□□□ 0.3
EXOSC3-207ENST00000490516 PGK1P00558 417 aa16.95■□□□□ 0.3
EXOSC3-207ENST00000490516 TIMM10P62072 90 aa16.95■□□□□ 0.3
EXOSC3-207ENST00000490516 AAK1Q2M2I8 961 aa16.95■□□□□ 0.3
EXOSC3-207ENST00000490516 LBX2Q6XYB7 198 aa16.95■□□□□ 0.3
EXOSC3-207ENST00000490516 TBC1D9Q6ZT07 1266 aa16.95■□□□□ 0.3
EXOSC3-207ENST00000490516 CRACR2BQ8N4Y2 399 aaPredicted RBP16.95■□□□□ 0.3
EXOSC3-207ENST00000490516 C12orf42Q96LP6 360 aa16.95■□□□□ 0.3
EXOSC3-207ENST00000490516 FEZ1Q99689 392 aa16.95■□□□□ 0.3
EXOSC3-207ENST00000490516 TRIM34Q9BYJ4 488 aa16.95■□□□□ 0.3
EXOSC3-207ENST00000490516 GINM1Q9NU53 330 aa16.95■□□□□ 0.3
EXOSC3-207ENST00000490516 MSRAQ9UJ68 235 aa16.95■□□□□ 0.3
EXOSC3-207ENST00000490516 SALL2Q9Y467 1007 aaPredicted RBP16.95■□□□□ 0.3
EXOSC3-207ENST00000490516 DCDC2CA8MYV0 355 aa16.94■□□□□ 0.3
EXOSC3-207ENST00000490516 GPR37L1O60883 481 aa16.94■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms