RNA–Protein interactions for RNA: ENST00000490193.5

USP39-216, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5

Gene USP39, Length 1,028 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-216ENST00000490193 JAG1P78504 1218 aa10.1□□□□□ -0.79
USP39-216ENST00000490193 PDE3AQ14432 1141 aa10.1□□□□□ -0.79
USP39-216ENST00000490193 MORN1Q5T089 497 aa10.1□□□□□ -0.79
USP39-216ENST00000490193 TBC1D9Q6ZT07 1266 aa10.1□□□□□ -0.79
USP39-216ENST00000490193 APBA2Q99767 749 aa10.1□□□□□ -0.79
USP39-216ENST00000490193 KRTAP3-3Q9BYR6 98 aa10.1□□□□□ -0.79
USP39-216ENST00000490193 KRTAP3-2Q9BYR7 98 aa10.1□□□□□ -0.79
USP39-216ENST00000490193 DNAJC18Q9H819 358 aa10.1□□□□□ -0.79
USP39-216ENST00000490193 TMOD4Q9NZQ9 345 aa10.1□□□□□ -0.79
USP39-216ENST00000490193 NOB1Q9ULX3 412 aaKnown RBP10.1□□□□□ -0.79
USP39-216ENST00000490193 MYH1P12882 1939 aa10.09□□□□□ -0.79
USP39-216ENST00000490193 USP17L10C9JJH3 530 aa10.09□□□□□ -0.79
USP39-216ENST00000490193 UQCRFS1P1P0C7P4 283 aa10.09□□□□□ -0.79
USP39-216ENST00000490193 RGS2P41220 211 aa10.09□□□□□ -0.79
USP39-216ENST00000490193 MCAMP43121 646 aa10.09□□□□□ -0.79
USP39-216ENST00000490193 PPP4CP60510 307 aa10.09□□□□□ -0.79
USP39-216ENST00000490193 LRRC26Q2I0M4 334 aa10.09□□□□□ -0.79
USP39-216ENST00000490193 POTEEQ6S8J3 1075 aa10.09□□□□□ -0.79
USP39-216ENST00000490193 GPR142Q7Z601 462 aa10.09□□□□□ -0.79
USP39-216ENST00000490193 ZNF467Q7Z7K2 595 aaPredicted RBP10.09□□□□□ -0.79
USP39-216ENST00000490193 FOXP4Q8IVH2 680 aaPredicted RBP10.09□□□□□ -0.79
USP39-216ENST00000490193 SH3RF3Q8TEJ3 882 aaPredicted RBP10.09□□□□□ -0.79
USP39-216ENST00000490193 ARHGAP45Q92619 1136 aa10.09□□□□□ -0.79
USP39-216ENST00000490193 RAI14Q9P0K7 980 aa10.09□□□□□ -0.79
USP39-216ENST00000490193 ZNF236Q9UL36 1845 aa10.09□□□□□ -0.79
USP39-216ENST00000490193 EYSQ5T1H1 3165 aa10.09□□□□□ -0.79
USP39-216ENST00000490193 RLFQ13129 1914 aa10.09□□□□□ -0.79
USP39-216ENST00000490193 FLT1P17948 1338 aa10.08□□□□□ -0.8
USP39-216ENST00000490193 PEX10O60683 326 aa10.08□□□□□ -0.8
USP39-216ENST00000490193 BAG3O95817 575 aa10.08□□□□□ -0.8
USP39-216ENST00000490193 CCND3P30281 292 aaPredicted RBP10.08□□□□□ -0.8
USP39-216ENST00000490193 CCL14Q16627 93 aa10.08□□□□□ -0.8
USP39-216ENST00000490193 Q3C1V9 767 aa10.08□□□□□ -0.8
USP39-216ENST00000490193 GORABQ5T7V8 394 aa10.08□□□□□ -0.8
USP39-216ENST00000490193 PLEKHH3Q7Z736 793 aa10.08□□□□□ -0.8
USP39-216ENST00000490193 CDCA7LQ96GN5 454 aa10.08□□□□□ -0.8
USP39-216ENST00000490193 C12orf42Q96LP6 360 aa10.08□□□□□ -0.8
USP39-216ENST00000490193 NEUROD6Q96NK8 337 aa10.08□□□□□ -0.8
USP39-216ENST00000490193 HS3ST6Q96QI5 342 aa10.08□□□□□ -0.8
USP39-216ENST00000490193 NOL10Q9BSC4 688 aaKnown RBP10.08□□□□□ -0.8
USP39-216ENST00000490193 PORCNQ9H237 461 aa10.08□□□□□ -0.8
USP39-216ENST00000490193 LRP2BPQ9P2M1 347 aa10.08□□□□□ -0.8
USP39-216ENST00000490193 ZBTB21Q9ULJ3 1066 aa10.08□□□□□ -0.8
USP39-216ENST00000490193 SPTBN5Q9NRC6 3674 aaKnown RBP10.08□□□□□ -0.8
USP39-216ENST00000490193 POTEB3A0JP26 581 aa10.07□□□□□ -0.8
USP39-216ENST00000490193 CHRM1P11229 460 aaPredicted RBP10.07□□□□□ -0.8
USP39-216ENST00000490193 MAP2K5Q13163 448 aa10.07□□□□□ -0.8
USP39-216ENST00000490193 SHROOM1Q2M3G4 852 aaPredicted RBP10.07□□□□□ -0.8
USP39-216ENST00000490193 NAA16Q6N069 864 aaPredicted RBP10.07□□□□□ -0.8
USP39-216ENST00000490193 USP17L2Q6R6M4 530 aa10.07□□□□□ -0.8
USP39-216ENST00000490193 POTEBQ6S5H4 581 aa10.07□□□□□ -0.8
USP39-216ENST00000490193 LBX2Q6XYB7 198 aa10.07□□□□□ -0.8
USP39-216ENST00000490193 PHF6Q8IWS0 365 aaKnown RBP eCLIP10.07□□□□□ -0.8
USP39-216ENST00000490193 GUCD1Q96NT3 240 aa10.07□□□□□ -0.8
USP39-216ENST00000490193 GPR108Q9NPR9 543 aa10.07□□□□□ -0.8
USP39-216ENST00000490193 EMILIN3Q9NT22 766 aa10.07□□□□□ -0.8
USP39-216ENST00000490193 AATFQ9NY61 560 aaKnown RBP eCLIP10.07□□□□□ -0.8
USP39-216ENST00000490193 RABGAP1Q9Y3P9 1069 aa10.07□□□□□ -0.8
USP39-216ENST00000490193 MSCO60682 206 aa10.06□□□□□ -0.8
USP39-216ENST00000490193 CNMDO75829 334 aa10.06□□□□□ -0.8
USP39-216ENST00000490193 GLRX3O76003 335 aaKnown RBP10.06□□□□□ -0.8
USP39-216ENST00000490193 GDF11O95390 407 aa10.06□□□□□ -0.8
USP39-216ENST00000490193 IGHA2P01877 340 aa10.06□□□□□ -0.8
USP39-216ENST00000490193 HOXC6P09630 235 aa10.06□□□□□ -0.8
USP39-216ENST00000490193 MDM2Q00987 491 aaPredicted RBP10.06□□□□□ -0.8
USP39-216ENST00000490193 MAPKAPK5Q8IW41 473 aa10.06□□□□□ -0.8
USP39-216ENST00000490193 CCAR1Q8IX12 1150 aaKnown RBP10.06□□□□□ -0.8
USP39-216ENST00000490193 CRACR2BQ8N4Y2 399 aaPredicted RBP10.06□□□□□ -0.8
USP39-216ENST00000490193 TGFBRAP1Q8WUH2 860 aa10.06□□□□□ -0.8
USP39-216ENST00000490193 EDC3Q96F86 508 aaKnown RBP10.06□□□□□ -0.8
USP39-216ENST00000490193 ZNF512BQ96KM6 892 aaPredicted RBP10.06□□□□□ -0.8
USP39-216ENST00000490193 A0A0G2JMZ2 1700 aa10.06□□□□□ -0.8
USP39-216ENST00000490193 PRUNE2Q8WUY3 3088 aa10.05□□□□□ -0.8
USP39-216ENST00000490193 ZNF316A6NFI3 1004 aaPredicted RBP10.05□□□□□ -0.8
USP39-216ENST00000490193 SLC15A5A6NIM6 579 aa10.05□□□□□ -0.8
USP39-216ENST00000490193 USP17L15C9J2P7 530 aa10.05□□□□□ -0.8
USP39-216ENST00000490193 USP17L13C9JLJ4 530 aa10.05□□□□□ -0.8
USP39-216ENST00000490193 USP17L11C9JVI0 530 aa10.05□□□□□ -0.8
USP39-216ENST00000490193 USP17L18D6R9N7 530 aa10.05□□□□□ -0.8
USP39-216ENST00000490193 USP17L22D6RA61 530 aa10.05□□□□□ -0.8
USP39-216ENST00000490193 USP17L17D6RBQ6 530 aa10.05□□□□□ -0.8
USP39-216ENST00000490193 USP17L19D6RCP7 530 aa10.05□□□□□ -0.8
USP39-216ENST00000490193 USP17L20D6RJB6 530 aa10.05□□□□□ -0.8
USP39-216ENST00000490193 CYP2E1P05181 493 aaPredicted RBP10.05□□□□□ -0.8
USP39-216ENST00000490193 HLA-DOAP06340 250 aa10.05□□□□□ -0.8
USP39-216ENST00000490193 PTPREP23469 700 aa10.05□□□□□ -0.8
USP39-216ENST00000490193 RARSP54136 660 aaKnown RBP10.05□□□□□ -0.8
USP39-216ENST00000490193 CCNA1P78396 465 aa10.05□□□□□ -0.8
USP39-216ENST00000490193 USP17L24Q0WX57 530 aa10.05□□□□□ -0.8
USP39-216ENST00000490193 MFSD14CQ5VZR4 134 aa10.05□□□□□ -0.8
USP39-216ENST00000490193 TATDN1Q6P1N9 297 aa10.05□□□□□ -0.8
USP39-216ENST00000490193 ATF7IPQ6VMQ6 1270 aa10.05□□□□□ -0.8
USP39-216ENST00000490193 ADGRA1Q86SQ6 560 aa10.05□□□□□ -0.8
USP39-216ENST00000490193 LPAR1Q92633 364 aa10.05□□□□□ -0.8
USP39-216ENST00000490193 PAGR1Q9BTK6 254 aa10.05□□□□□ -0.8
USP39-216ENST00000490193 TRIM34Q9BYJ4 488 aa10.05□□□□□ -0.8
USP39-216ENST00000490193 DDX20Q9UHI6 824 aaKnown RBP10.05□□□□□ -0.8
USP39-216ENST00000490193 PALD1Q9ULE6 856 aa10.05□□□□□ -0.8
USP39-216ENST00000490193 PNMA6EA0A0J9YXQ4 647 aa10.04□□□□□ -0.8
USP39-216ENST00000490193 DNM1LO00429 736 aa10.04□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms