RNA–Protein interactions for RNA: ENST00000489892.1

TRIM40-208, Transcript of tripartite motif containing 40, humanhuman

TSL 3

Gene TRIM40, Length 941 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM40-208ENST00000489892 KIF5BP33176 963 aa13.61□□□□□ -0.23
TRIM40-208ENST00000489892 TCP10Q12799 353 aa13.61□□□□□ -0.23
TRIM40-208ENST00000489892 SEC23AQ15436 765 aa13.61□□□□□ -0.23
TRIM40-208ENST00000489892 METTL16Q86W50 562 aaKnown RBP13.61□□□□□ -0.23
TRIM40-208ENST00000489892 STK11IPQ8N1F8 1099 aa13.61□□□□□ -0.23
TRIM40-208ENST00000489892 FAM43AQ8N2R8 423 aa13.61□□□□□ -0.23
TRIM40-208ENST00000489892 ENAHQ8N8S7 591 aaPredicted RBP13.61□□□□□ -0.23
TRIM40-208ENST00000489892 SPRYD3Q8NCJ5 442 aa13.61□□□□□ -0.23
TRIM40-208ENST00000489892 RGS22Q8NE09 1264 aa13.61□□□□□ -0.23
TRIM40-208ENST00000489892 DYNLL2Q96FJ2 89 aa13.61□□□□□ -0.23
TRIM40-208ENST00000489892 CSRNP1Q96S65 589 aa13.61□□□□□ -0.23
TRIM40-208ENST00000489892 KAT14Q9H8E8 782 aa13.61□□□□□ -0.23
TRIM40-208ENST00000489892 RBM28Q9NW13 759 aaKnown RBP13.61□□□□□ -0.23
TRIM40-208ENST00000489892 PPP2R3BQ9Y5P8 575 aa13.61□□□□□ -0.23
TRIM40-208ENST00000489892 MYH8P13535 1937 aa13.6□□□□□ -0.23
TRIM40-208ENST00000489892 CLRN2A0PK11 232 aa13.6□□□□□ -0.23
TRIM40-208ENST00000489892 TMEM88BA6NKF7 163 aa13.6□□□□□ -0.23
TRIM40-208ENST00000489892 GOLGA8AA7E2F4 631 aa13.6□□□□□ -0.23
TRIM40-208ENST00000489892 TCP10L2B9ZVM9 353 aa13.6□□□□□ -0.23
TRIM40-208ENST00000489892 TBC1D12O60347 775 aa13.6□□□□□ -0.23
TRIM40-208ENST00000489892 EPHX2P34913 555 aa13.6□□□□□ -0.23
TRIM40-208ENST00000489892 PNMA8AQ86V59 439 aaPredicted RBP13.6□□□□□ -0.23
TRIM40-208ENST00000489892 ZNF654Q8IZM8 581 aa13.6□□□□□ -0.23
TRIM40-208ENST00000489892 FAM184AQ8NB25 1140 aa13.6□□□□□ -0.23
TRIM40-208ENST00000489892 MAP3K14Q99558 947 aa13.6□□□□□ -0.23
TRIM40-208ENST00000489892 PASKQ96RG2 1323 aa13.6□□□□□ -0.23
TRIM40-208ENST00000489892 WDR33Q9C0J8 1336 aaKnown RBP13.6□□□□□ -0.23
TRIM40-208ENST00000489892 LARGE1O95461 756 aa13.59□□□□□ -0.23
TRIM40-208ENST00000489892 TOP1P11387 765 aaKnown RBP13.59□□□□□ -0.23
TRIM40-208ENST00000489892 GNAQP50148 359 aa13.59□□□□□ -0.23
TRIM40-208ENST00000489892 CACNB3P54284 484 aa13.59□□□□□ -0.23
TRIM40-208ENST00000489892 SCRN1Q12765 414 aa13.59□□□□□ -0.23
TRIM40-208ENST00000489892 STK3Q13188 491 aa13.59□□□□□ -0.23
TRIM40-208ENST00000489892 RTN1Q16799 776 aa13.59□□□□□ -0.23
TRIM40-208ENST00000489892 SLC4A8Q2Y0W8 1093 aa13.59□□□□□ -0.23
TRIM40-208ENST00000489892 MICU3Q86XE3 530 aa13.59□□□□□ -0.23
TRIM40-208ENST00000489892 TRIM22Q8IYM9 498 aa13.59□□□□□ -0.23
TRIM40-208ENST00000489892 NECAB1Q8N987 351 aa13.59□□□□□ -0.23
TRIM40-208ENST00000489892 CTCFLQ8NI51 663 aaPredicted RBP13.59□□□□□ -0.23
TRIM40-208ENST00000489892 WASF1Q92558 559 aa13.59□□□□□ -0.23
TRIM40-208ENST00000489892 CABP5Q9NP86 173 aa13.59□□□□□ -0.23
TRIM40-208ENST00000489892 INCENPQ9NQS7 918 aa13.59□□□□□ -0.23
TRIM40-208ENST00000489892 ADARB2Q9NS39 739 aaKnown RBP13.59□□□□□ -0.23
TRIM40-208ENST00000489892 GINM1Q9NU53 330 aa13.59□□□□□ -0.23
TRIM40-208ENST00000489892 RBM27Q9P2N5 1060 aaKnown RBP13.59□□□□□ -0.23
TRIM40-208ENST00000489892 BRPF3Q9ULD4 1205 aa13.59□□□□□ -0.23
TRIM40-208ENST00000489892 SYNPO2Q9UMS6 1093 aa13.59□□□□□ -0.23
TRIM40-208ENST00000489892 PCDHAC2Q9Y5I4 1007 aa13.59□□□□□ -0.23
TRIM40-208ENST00000489892 TACC3Q9Y6A5 838 aa13.59□□□□□ -0.23
TRIM40-208ENST00000489892 PITPNM2Q9BZ72 1349 aa13.59□□□□□ -0.23
TRIM40-208ENST00000489892 DDTLA6NHG4 134 aaPredicted RBP13.58□□□□□ -0.24
TRIM40-208ENST00000489892 COL9A3Q14050 684 aaPredicted RBP13.58□□□□□ -0.24
TRIM40-208ENST00000489892 NBPF9Q3BBW0 867 aa13.58□□□□□ -0.24
TRIM40-208ENST00000489892 CERKLQ49MI3 558 aaPredicted RBP13.58□□□□□ -0.24
TRIM40-208ENST00000489892 FAM47AQ5JRC9 791 aa13.58□□□□□ -0.24
TRIM40-208ENST00000489892 DCAF15Q66K64 600 aa13.58□□□□□ -0.24
TRIM40-208ENST00000489892 TATDN1Q6P1N9 297 aa13.58□□□□□ -0.24
TRIM40-208ENST00000489892 TMEM179Q6ZVK1 233 aa13.58□□□□□ -0.24
TRIM40-208ENST00000489892 SLC44A5Q8NCS7 719 aa13.58□□□□□ -0.24
TRIM40-208ENST00000489892 ZKSCAN3Q9BRR0 538 aa13.58□□□□□ -0.24
TRIM40-208ENST00000489892 LARP6Q9BRS8 491 aaKnown RBP13.58□□□□□ -0.24
TRIM40-208ENST00000489892 KANSL2Q9H9L4 492 aa13.58□□□□□ -0.24
TRIM40-208ENST00000489892 FOXD4L1Q9NU39 408 aa13.58□□□□□ -0.24
TRIM40-208ENST00000489892 ATP6V1DQ9Y5K8 247 aa13.58□□□□□ -0.24
TRIM40-208ENST00000489892 TTLL1O95922 423 aa13.57□□□□□ -0.24
TRIM40-208ENST00000489892 GJB2P29033 226 aa13.57□□□□□ -0.24
TRIM40-208ENST00000489892 SHMT1P34896 483 aa13.57□□□□□ -0.24
TRIM40-208ENST00000489892 KLHL40Q2TBA0 621 aa13.57□□□□□ -0.24
TRIM40-208ENST00000489892 TBC1D10BQ4KMP7 808 aaPredicted RBP13.57□□□□□ -0.24
TRIM40-208ENST00000489892 RBM26Q5T8P6 1007 aaKnown RBP13.57□□□□□ -0.24
TRIM40-208ENST00000489892 FANCBQ8NB91 859 aa13.57□□□□□ -0.24
TRIM40-208ENST00000489892 SMARCC2Q8TAQ2 1214 aa13.57□□□□□ -0.24
TRIM40-208ENST00000489892 LZTS2Q9BRK4 669 aa13.57□□□□□ -0.24
TRIM40-208ENST00000489892 XPO5Q9HAV4 1204 aaKnown RBP eCLIP13.57□□□□□ -0.24
TRIM40-208ENST00000489892 STX8Q9UNK0 236 aa13.57□□□□□ -0.24
TRIM40-208ENST00000489892 HPS5Q9UPZ3 1129 aa13.57□□□□□ -0.24
TRIM40-208ENST00000489892 STK36Q9NRP7 1315 aa13.57□□□□□ -0.24
TRIM40-208ENST00000489892 TCHHQ07283 1943 aa13.56□□□□□ -0.24
TRIM40-208ENST00000489892 PTPDC1A2A3K4 754 aa13.56□□□□□ -0.24
TRIM40-208ENST00000489892 ITGBL1O95965 494 aaPredicted RBP13.56□□□□□ -0.24
TRIM40-208ENST00000489892 NOVP48745 357 aa13.56□□□□□ -0.24
TRIM40-208ENST00000489892 CCT2P78371 535 aaKnown RBP13.56□□□□□ -0.24
TRIM40-208ENST00000489892 AKAP17AQ02040 695 aaKnown RBP13.56□□□□□ -0.24
TRIM40-208ENST00000489892 RASA3Q14644 834 aa13.56□□□□□ -0.24
TRIM40-208ENST00000489892 ABCB5Q2M3G0 1257 aa13.56□□□□□ -0.24
TRIM40-208ENST00000489892 MAP1SQ66K74 1059 aaPredicted RBP13.56□□□□□ -0.24
TRIM40-208ENST00000489892 SAMD7Q7Z3H4 446 aa13.56□□□□□ -0.24
TRIM40-208ENST00000489892 PNMA1Q8ND90 353 aa13.56□□□□□ -0.24
TRIM40-208ENST00000489892 NSUN7Q8NE18 718 aaKnown RBP13.56□□□□□ -0.24
TRIM40-208ENST00000489892 NUP133Q8WUM0 1156 aa13.56□□□□□ -0.24
TRIM40-208ENST00000489892 GPHNQ9NQX3 736 aaPredicted RBP13.56□□□□□ -0.24
TRIM40-208ENST00000489892 MTMR4Q9NYA4 1195 aa13.56□□□□□ -0.24
TRIM40-208ENST00000489892 SMIM22K7EJ46 135 aa13.55□□□□□ -0.24
TRIM40-208ENST00000489892 MPHOSPH10O00566 681 aaKnown RBP13.55□□□□□ -0.24
TRIM40-208ENST00000489892 HSPA8P11142 646 aaKnown RBP13.55□□□□□ -0.24
TRIM40-208ENST00000489892 IFNAR1P17181 557 aa13.55□□□□□ -0.24
TRIM40-208ENST00000489892 VEGFBP49765 207 aa13.55□□□□□ -0.24
TRIM40-208ENST00000489892 LARP1BQ659C4 914 aaKnown RBP13.55□□□□□ -0.24
TRIM40-208ENST00000489892 USP50Q70EL3 339 aaPredicted RBP13.55□□□□□ -0.24
TRIM40-208ENST00000489892 SH3BP5LQ7L8J4 393 aa13.55□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms