RNA–Protein interactions for RNA: ENST00000489562.5

C9orf3-221, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 2

Gene C9orf3, Length 646 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-221ENST00000489562 SYNPO2Q9UMS6 1093 aa16.32■□□□□ 0.2
C9orf3-221ENST00000489562 PTPRFP10586 1907 aa16.31■□□□□ 0.2
C9orf3-221ENST00000489562 USP17L5A8MUK1 530 aa16.31■□□□□ 0.2
C9orf3-221ENST00000489562 TTLL1O95922 423 aa16.31■□□□□ 0.2
C9orf3-221ENST00000489562 CPA1P15085 419 aa16.31■□□□□ 0.2
C9orf3-221ENST00000489562 GUCY1A2P33402 732 aa16.31■□□□□ 0.2
C9orf3-221ENST00000489562 LIFRP42702 1097 aa16.31■□□□□ 0.2
C9orf3-221ENST00000489562 ICA1Q05084 483 aa16.31■□□□□ 0.2
C9orf3-221ENST00000489562 FMR1Q06787 632 aaKnown RBP eCLIP16.31■□□□□ 0.2
C9orf3-221ENST00000489562 VGLL4Q14135 290 aa16.31■□□□□ 0.2
C9orf3-221ENST00000489562 WTAPQ15007 396 aa16.31■□□□□ 0.2
C9orf3-221ENST00000489562 SEPT2Q15019 361 aa16.31■□□□□ 0.2
C9orf3-221ENST00000489562 RAB3GAP1Q15042 981 aa16.31■□□□□ 0.2
C9orf3-221ENST00000489562 SEC23AQ15436 765 aa16.31■□□□□ 0.2
C9orf3-221ENST00000489562 PPP1R3FQ6ZSY5 799 aaPredicted RBP16.31■□□□□ 0.2
C9orf3-221ENST00000489562 CHST3Q7LGC8 479 aa16.31■□□□□ 0.2
C9orf3-221ENST00000489562 ENAHQ8N8S7 591 aaPredicted RBP16.31■□□□□ 0.2
C9orf3-221ENST00000489562 NKX2-3Q8TAU0 364 aa16.31■□□□□ 0.2
C9orf3-221ENST00000489562 IGDCC4Q8TDY8 1250 aa16.31■□□□□ 0.2
C9orf3-221ENST00000489562 ANKS1AQ92625 1134 aa16.31■□□□□ 0.2
C9orf3-221ENST00000489562 ZKSCAN4Q969J2 545 aaPredicted RBP16.31■□□□□ 0.2
C9orf3-221ENST00000489562 CEP95Q96GE4 821 aa16.31■□□□□ 0.2
C9orf3-221ENST00000489562 AGXT2Q9BYV1 514 aa16.31■□□□□ 0.2
C9orf3-221ENST00000489562 SH2D4AQ9H788 454 aa16.31■□□□□ 0.2
C9orf3-221ENST00000489562 AS3MTQ9HBK9 375 aa16.31■□□□□ 0.2
C9orf3-221ENST00000489562 ARHGEF10LQ9HCE6 1279 aa16.31■□□□□ 0.2
C9orf3-221ENST00000489562 IL17RBQ9NRM6 502 aa16.31■□□□□ 0.2
C9orf3-221ENST00000489562 NYAP2Q9P242 653 aa16.31■□□□□ 0.2
C9orf3-221ENST00000489562 FZD1Q9UP38 647 aa16.31■□□□□ 0.2
C9orf3-221ENST00000489562 SH2B2O14492 632 aaPredicted RBP16.3■□□□□ 0.2
C9orf3-221ENST00000489562 IFIT1BQ5T764 474 aaKnown RBP16.3■□□□□ 0.2
C9orf3-221ENST00000489562 CST9Q5W186 159 aa16.3■□□□□ 0.2
C9orf3-221ENST00000489562 Q6ZUG5 572 aa16.3■□□□□ 0.2
C9orf3-221ENST00000489562 ZKSCAN3Q9BRR0 538 aa16.3■□□□□ 0.2
C9orf3-221ENST00000489562 STX8Q9UNK0 236 aa16.3■□□□□ 0.2
C9orf3-221ENST00000489562 SNCAIPQ9Y6H5 919 aa16.3■□□□□ 0.2
C9orf3-221ENST00000489562 NMT2O60551 498 aa16.29■□□□□ 0.2
C9orf3-221ENST00000489562 TOP1P11387 765 aaKnown RBP16.29■□□□□ 0.2
C9orf3-221ENST00000489562 PTPRAP18433 802 aa16.29■□□□□ 0.2
C9orf3-221ENST00000489562 MCM2P49736 904 aa16.29■□□□□ 0.2
C9orf3-221ENST00000489562 JAG1P78504 1218 aa16.29■□□□□ 0.2
C9orf3-221ENST00000489562 COL9A3Q14050 684 aaPredicted RBP16.29■□□□□ 0.2
C9orf3-221ENST00000489562 RCSD1Q6JBY9 416 aa16.29■□□□□ 0.2
C9orf3-221ENST00000489562 SGMS1Q86VZ5 419 aa16.29■□□□□ 0.2
C9orf3-221ENST00000489562 ERO1BQ86YB8 467 aa16.29■□□□□ 0.2
C9orf3-221ENST00000489562 TCEANC2Q96MN5 208 aa16.29■□□□□ 0.2
C9orf3-221ENST00000489562 WDR18Q9BV38 432 aa16.29■□□□□ 0.2
C9orf3-221ENST00000489562 LY9Q9HBG7 655 aa16.29■□□□□ 0.2
C9orf3-221ENST00000489562 UBE2Q2LH0YL09 131 aa16.28■□□□□ 0.2
C9orf3-221ENST00000489562 EEF2P13639 858 aaKnown RBP16.28■□□□□ 0.2
C9orf3-221ENST00000489562 PPATQ06203 517 aa16.28■□□□□ 0.2
C9orf3-221ENST00000489562 SHROOM1Q2M3G4 852 aaPredicted RBP16.28■□□□□ 0.2
C9orf3-221ENST00000489562 NFXL1Q6ZNB6 911 aa16.28■□□□□ 0.2
C9orf3-221ENST00000489562 MOB2Q70IA6 237 aa16.28■□□□□ 0.2
C9orf3-221ENST00000489562 BRF1Q92994 677 aa16.28■□□□□ 0.2
C9orf3-221ENST00000489562 MKL1Q969V6 931 aa16.28■□□□□ 0.2
C9orf3-221ENST00000489562 LRRC2Q9BYS8 371 aa16.28■□□□□ 0.2
C9orf3-221ENST00000489562 KAT14Q9H8E8 782 aa16.28■□□□□ 0.2
C9orf3-221ENST00000489562 CCDC69A6NI79 296 aa16.27■□□□□ 0.2
C9orf3-221ENST00000489562 SPDYE5A6NIY4 337 aa16.27■□□□□ 0.2
C9orf3-221ENST00000489562 TMEM88BA6NKF7 163 aa16.27■□□□□ 0.2
C9orf3-221ENST00000489562 RCAN1P53805 252 aa16.27■□□□□ 0.2
C9orf3-221ENST00000489562 AK2P54819 239 aa16.27■□□□□ 0.2
C9orf3-221ENST00000489562 EVCP57679 992 aa16.27■□□□□ 0.2
C9orf3-221ENST00000489562 TOB2Q14106 344 aaPredicted RBP16.27■□□□□ 0.2
C9orf3-221ENST00000489562 SYNE3Q6ZMZ3 975 aa16.27■□□□□ 0.2
C9orf3-221ENST00000489562 SLC10A4Q96EP9 437 aa16.27■□□□□ 0.2
C9orf3-221ENST00000489562 TMEM47Q9BQJ4 181 aa16.27■□□□□ 0.2
C9orf3-221ENST00000489562 CLIP2Q9UDT6 1046 aa16.27■□□□□ 0.2
C9orf3-221ENST00000489562 CALM1P0DP23 149 aa16.26■□□□□ 0.19
C9orf3-221ENST00000489562 CALM2P0DP24 149 aa16.26■□□□□ 0.19
C9orf3-221ENST00000489562 CALM3P0DP25 149 aa16.26■□□□□ 0.19
C9orf3-221ENST00000489562 HUNKP57058 714 aa16.26■□□□□ 0.19
C9orf3-221ENST00000489562 ATP2B2Q01814 1243 aa16.26■□□□□ 0.19
C9orf3-221ENST00000489562 IFFO2Q5TF58 517 aa16.26■□□□□ 0.19
C9orf3-221ENST00000489562 CATIPQ7Z7H3 387 aa16.26■□□□□ 0.19
C9orf3-221ENST00000489562 CLEC10AQ8IUN9 316 aa16.26■□□□□ 0.19
C9orf3-221ENST00000489562 ZNF280CQ8ND82 737 aa16.26■□□□□ 0.19
C9orf3-221ENST00000489562 PNMA1Q8ND90 353 aa16.26■□□□□ 0.19
C9orf3-221ENST00000489562 CLMNQ96JQ2 1002 aa16.26■□□□□ 0.19
C9orf3-221ENST00000489562 FEZ1Q99689 392 aa16.26■□□□□ 0.19
C9orf3-221ENST00000489562 ELP3Q9H9T3 547 aa16.26■□□□□ 0.19
C9orf3-221ENST00000489562 TMX2Q9Y320 296 aa16.26■□□□□ 0.19
C9orf3-221ENST00000489562 ZHX2Q9Y6X8 837 aa16.26■□□□□ 0.19
C9orf3-221ENST00000489562 LOC285556D6RIA3 1793 aa16.26■□□□□ 0.19
C9orf3-221ENST00000489562 C19orf81C9J6K1 198 aa16.25■□□□□ 0.19
C9orf3-221ENST00000489562 USP17L10C9JJH3 530 aa16.25■□□□□ 0.19
C9orf3-221ENST00000489562 DDAH1O94760 285 aa16.25■□□□□ 0.19
C9orf3-221ENST00000489562 USP14P54578 494 aa16.25■□□□□ 0.19
C9orf3-221ENST00000489562 PPIL2Q13356 520 aa16.25■□□□□ 0.19
C9orf3-221ENST00000489562 SAPCD2Q86UD0 394 aa16.25■□□□□ 0.19
C9orf3-221ENST00000489562 SIAH1Q8IUQ4 282 aa16.25■□□□□ 0.19
C9orf3-221ENST00000489562 ZNF654Q8IZM8 581 aa16.25■□□□□ 0.19
C9orf3-221ENST00000489562 GMCL1P1Q8NEA9 526 aa16.25■□□□□ 0.19
C9orf3-221ENST00000489562 SNX21Q969T3 373 aa16.25■□□□□ 0.19
C9orf3-221ENST00000489562 HHIPL1Q96JK4 782 aa16.25■□□□□ 0.19
C9orf3-221ENST00000489562 KIAA1683Q9H0B3 1180 aa16.25■□□□□ 0.19
C9orf3-221ENST00000489562 GOPCQ9HD26 462 aa16.25■□□□□ 0.19
C9orf3-221ENST00000489562 GPHNQ9NQX3 736 aaPredicted RBP16.25■□□□□ 0.19
C9orf3-221ENST00000489562 LIMCH1Q9UPQ0 1083 aa16.25■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms