RNA–Protein interactions for RNA: ENST00000489318.1

C9orf3-220, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 3

Gene C9orf3, Length 682 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-220ENST00000489318 MYL10Q9BUA6 226 aa13.42□□□□□ -0.26
C9orf3-220ENST00000489318 VEZTQ9HBM0 779 aa13.42□□□□□ -0.26
C9orf3-220ENST00000489318 PITPNM2Q9BZ72 1349 aa13.41□□□□□ -0.26
C9orf3-220ENST00000489318 WDR33Q9C0J8 1336 aaKnown RBP13.41□□□□□ -0.26
C9orf3-220ENST00000489318 CCDC196A0A1B0GTZ2 297 aa13.41□□□□□ -0.26
C9orf3-220ENST00000489318 STX6O43752 255 aa13.41□□□□□ -0.26
C9orf3-220ENST00000489318 FDPSP14324 419 aaKnown RBP13.41□□□□□ -0.26
C9orf3-220ENST00000489318 IFNAR1P17181 557 aa13.41□□□□□ -0.26
C9orf3-220ENST00000489318 RXRAP19793 462 aa13.41□□□□□ -0.26
C9orf3-220ENST00000489318 RTN1Q16799 776 aa13.41□□□□□ -0.26
C9orf3-220ENST00000489318 TBC1D10BQ4KMP7 808 aaPredicted RBP13.41□□□□□ -0.26
C9orf3-220ENST00000489318 RAB11FIP4Q86YS3 637 aa13.41□□□□□ -0.26
C9orf3-220ENST00000489318 ZSCAN29Q8IWY8 852 aaPredicted RBP13.41□□□□□ -0.26
C9orf3-220ENST00000489318 FANCBQ8NB91 859 aa13.41□□□□□ -0.26
C9orf3-220ENST00000489318 TRPM4Q8TD43 1214 aa13.41□□□□□ -0.26
C9orf3-220ENST00000489318 CEP95Q96GE4 821 aa13.41□□□□□ -0.26
C9orf3-220ENST00000489318 RBM28Q9NW13 759 aaKnown RBP13.41□□□□□ -0.26
C9orf3-220ENST00000489318 MTMR4Q9NYA4 1195 aa13.41□□□□□ -0.26
C9orf3-220ENST00000489318 NAP1L2Q9ULW6 460 aaPredicted RBP13.41□□□□□ -0.26
C9orf3-220ENST00000489318 KIF3AQ9Y496 699 aa13.41□□□□□ -0.26
C9orf3-220ENST00000489318 CPLX1O14810 134 aa13.4□□□□□ -0.26
C9orf3-220ENST00000489318 DDNO94850 711 aaPredicted RBP13.4□□□□□ -0.26
C9orf3-220ENST00000489318 TOP1P11387 765 aaKnown RBP13.4□□□□□ -0.26
C9orf3-220ENST00000489318 ADD1P35611 737 aaKnown RBP13.4□□□□□ -0.26
C9orf3-220ENST00000489318 GRM4Q14833 912 aa13.4□□□□□ -0.26
C9orf3-220ENST00000489318 GPR162Q16538 588 aa13.4□□□□□ -0.26
C9orf3-220ENST00000489318 CPLX2Q6PUV4 134 aaKnown RBP13.4□□□□□ -0.26
C9orf3-220ENST00000489318 APOBEC3FQ8IUX4 373 aaKnown RBP13.4□□□□□ -0.26
C9orf3-220ENST00000489318 PNMA1Q8ND90 353 aa13.4□□□□□ -0.26
C9orf3-220ENST00000489318 TNPO1Q92973 898 aaKnown RBP13.4□□□□□ -0.26
C9orf3-220ENST00000489318 TMEM47Q9BQJ4 181 aa13.4□□□□□ -0.26
C9orf3-220ENST00000489318 TMEM39BQ9GZU3 492 aa13.4□□□□□ -0.26
C9orf3-220ENST00000489318 KAT14Q9H8E8 782 aa13.4□□□□□ -0.26
C9orf3-220ENST00000489318 HACL1Q9UJ83 578 aa13.4□□□□□ -0.26
C9orf3-220ENST00000489318 MTMR6Q9Y217 621 aa13.4□□□□□ -0.26
C9orf3-220ENST00000489318 PPP2R3BQ9Y5P8 575 aa13.4□□□□□ -0.26
C9orf3-220ENST00000489318 FAM196BA6NMK8 535 aa13.39□□□□□ -0.27
C9orf3-220ENST00000489318 SLURP2P0DP57 97 aa13.39□□□□□ -0.27
C9orf3-220ENST00000489318 EPS15P42566 896 aa13.39□□□□□ -0.27
C9orf3-220ENST00000489318 FUT2Q10981 343 aa13.39□□□□□ -0.27
C9orf3-220ENST00000489318 RASA3Q14644 834 aa13.39□□□□□ -0.27
C9orf3-220ENST00000489318 CERKLQ49MI3 558 aaPredicted RBP13.39□□□□□ -0.27
C9orf3-220ENST00000489318 TMEM179Q6ZVK1 233 aa13.39□□□□□ -0.27
C9orf3-220ENST00000489318 TMTC3Q6ZXV5 915 aa13.39□□□□□ -0.27
C9orf3-220ENST00000489318 NBPF11Q86T75 865 aa13.39□□□□□ -0.27
C9orf3-220ENST00000489318 CDAN1Q8IWY9 1227 aa13.39□□□□□ -0.27
C9orf3-220ENST00000489318 RNF26Q9BY78 433 aaPredicted RBP13.39□□□□□ -0.27
C9orf3-220ENST00000489318 TRIM34Q9BYJ4 488 aa13.39□□□□□ -0.27
C9orf3-220ENST00000489318 ADARB2Q9NS39 739 aaKnown RBP13.39□□□□□ -0.27
C9orf3-220ENST00000489318 SYNPO2Q9UMS6 1093 aa13.39□□□□□ -0.27
C9orf3-220ENST00000489318 STX8Q9UNK0 236 aa13.39□□□□□ -0.27
C9orf3-220ENST00000489318 SSC5DA1L4H1 1573 aa13.39□□□□□ -0.27
C9orf3-220ENST00000489318 ASTN2O75129 1339 aaPredicted RBP13.39□□□□□ -0.27
C9orf3-220ENST00000489318 CNTNAP5Q8WYK1 1306 aa13.39□□□□□ -0.27
C9orf3-220ENST00000489318 OTOFQ9HC10 1997 aa13.38□□□□□ -0.27
C9orf3-220ENST00000489318 FMNL1O95466 1100 aaPredicted RBP13.38□□□□□ -0.27
C9orf3-220ENST00000489318 TTLL1O95922 423 aa13.38□□□□□ -0.27
C9orf3-220ENST00000489318 SNHG28P0DPA3 235 aa13.38□□□□□ -0.27
C9orf3-220ENST00000489318 ZSCAN22P10073 491 aaPredicted RBP13.38□□□□□ -0.27
C9orf3-220ENST00000489318 LMOD1P29536 600 aaPredicted RBP13.38□□□□□ -0.27
C9orf3-220ENST00000489318 GUCY1A2P33402 732 aa13.38□□□□□ -0.27
C9orf3-220ENST00000489318 HIRAP54198 1017 aaPredicted RBP13.38□□□□□ -0.27
C9orf3-220ENST00000489318 RBM26Q5T8P6 1007 aaKnown RBP13.38□□□□□ -0.27
C9orf3-220ENST00000489318 LARP1BQ659C4 914 aaKnown RBP13.38□□□□□ -0.27
C9orf3-220ENST00000489318 CCDC144CPQ8IYA2 1237 aa13.38□□□□□ -0.27
C9orf3-220ENST00000489318 CTCFLQ8NI51 663 aaPredicted RBP13.38□□□□□ -0.27
C9orf3-220ENST00000489318 NUP133Q8WUM0 1156 aa13.38□□□□□ -0.27
C9orf3-220ENST00000489318 XPO5Q9HAV4 1204 aaKnown RBP eCLIP13.38□□□□□ -0.27
C9orf3-220ENST00000489318 NYAP2Q9P242 653 aa13.38□□□□□ -0.27
C9orf3-220ENST00000489318 PHIPQ8WWQ0 1821 aa13.37□□□□□ -0.27
C9orf3-220ENST00000489318 GLTPD2A6NH11 291 aa13.37□□□□□ -0.27
C9orf3-220ENST00000489318 F13A1P00488 732 aa13.37□□□□□ -0.27
C9orf3-220ENST00000489318 KIF5BP33176 963 aa13.37□□□□□ -0.27
C9orf3-220ENST00000489318 RRP1BQ14684 758 aaKnown RBP13.37□□□□□ -0.27
C9orf3-220ENST00000489318 ABCB5Q2M3G0 1257 aa13.37□□□□□ -0.27
C9orf3-220ENST00000489318 ANGEL2Q5VTE6 544 aaKnown RBP13.37□□□□□ -0.27
C9orf3-220ENST00000489318 DPY19L2Q6NUT2 758 aa13.37□□□□□ -0.27
C9orf3-220ENST00000489318 FAM184AQ8NB25 1140 aa13.37□□□□□ -0.27
C9orf3-220ENST00000489318 MKL1Q969V6 931 aa13.37□□□□□ -0.27
C9orf3-220ENST00000489318 DDX11Q96FC9 970 aa13.37□□□□□ -0.27
C9orf3-220ENST00000489318 KANSL2Q9H9L4 492 aa13.37□□□□□ -0.27
C9orf3-220ENST00000489318 GGA3Q9NZ52 723 aa13.37□□□□□ -0.27
C9orf3-220ENST00000489318 ORC3Q9UBD5 711 aaPredicted RBP13.37□□□□□ -0.27
C9orf3-220ENST00000489318 POLR2AP24928 1970 aaKnown RBP13.37□□□□□ -0.27
C9orf3-220ENST00000489318 PALM3A6NDB9 673 aaPredicted RBP13.36□□□□□ -0.27
C9orf3-220ENST00000489318 DTNBO60941 627 aa13.36□□□□□ -0.27
C9orf3-220ENST00000489318 CDC37L1Q7L3B6 337 aa13.36□□□□□ -0.27
C9orf3-220ENST00000489318 DEFB129Q9H1M3 183 aa13.36□□□□□ -0.27
C9orf3-220ENST00000489318 GINM1Q9NU53 330 aa13.36□□□□□ -0.27
C9orf3-220ENST00000489318 MAD2L2Q9UI95 211 aa13.36□□□□□ -0.27
C9orf3-220ENST00000489318 PHF20L1A8MW92 1017 aa13.35□□□□□ -0.27
C9orf3-220ENST00000489318 PRPF3O43395 683 aaKnown RBP13.35□□□□□ -0.27
C9orf3-220ENST00000489318 GDF11O95390 407 aa13.35□□□□□ -0.27
C9orf3-220ENST00000489318 PLEKHA8P1O95397 391 aa13.35□□□□□ -0.27
C9orf3-220ENST00000489318 DEXIO95424 95 aa13.35□□□□□ -0.27
C9orf3-220ENST00000489318 PDHBP11177 359 aa13.35□□□□□ -0.27
C9orf3-220ENST00000489318 SMARCA1P28370 1054 aa13.35□□□□□ -0.27
C9orf3-220ENST00000489318 GNAQP50148 359 aa13.35□□□□□ -0.27
C9orf3-220ENST00000489318 JAG1P78504 1218 aa13.35□□□□□ -0.27
C9orf3-220ENST00000489318 ICA1Q05084 483 aa13.35□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms