RNA–Protein interactions for RNA: ENST00000488905.1

HDAC6-231, Transcript of histone deacetylase 6, humanhuman

TSL 4

Gene HDAC6, Length 492 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-231ENST00000488905 GPR142Q7Z601 462 aa22.37■■□□□ 1.17
HDAC6-231ENST00000488905 MAGEB6P1A0A0J9YX57 407 aa22.36■■□□□ 1.17
HDAC6-231ENST00000488905 MS4A1P11836 297 aa22.36■■□□□ 1.17
HDAC6-231ENST00000488905 PDE6AP16499 860 aa22.36■■□□□ 1.17
HDAC6-231ENST00000488905 ZKSCAN1P17029 563 aaPredicted RBP22.36■■□□□ 1.17
HDAC6-231ENST00000488905 SHMT1P34896 483 aa22.36■■□□□ 1.17
HDAC6-231ENST00000488905 USP14P54578 494 aa22.36■■□□□ 1.17
HDAC6-231ENST00000488905 CCAR1Q8IX12 1150 aaKnown RBP22.36■■□□□ 1.17
HDAC6-231ENST00000488905 CLASRPQ8N2M8 674 aaKnown RBP22.36■■□□□ 1.17
HDAC6-231ENST00000488905 KIF1BPQ96EK5 621 aa22.36■■□□□ 1.17
HDAC6-231ENST00000488905 A0A0G2JMZ2 1700 aa22.36■■□□□ 1.17
HDAC6-231ENST00000488905 USP17L15C9J2P7 530 aa22.35■■□□□ 1.17
HDAC6-231ENST00000488905 USP17L13C9JLJ4 530 aa22.35■■□□□ 1.17
HDAC6-231ENST00000488905 USP17L11C9JVI0 530 aa22.35■■□□□ 1.17
HDAC6-231ENST00000488905 USP17L18D6R9N7 530 aa22.35■■□□□ 1.17
HDAC6-231ENST00000488905 USP17L22D6RA61 530 aa22.35■■□□□ 1.17
HDAC6-231ENST00000488905 USP17L17D6RBQ6 530 aa22.35■■□□□ 1.17
HDAC6-231ENST00000488905 USP17L19D6RCP7 530 aa22.35■■□□□ 1.17
HDAC6-231ENST00000488905 USP17L20D6RJB6 530 aa22.35■■□□□ 1.17
HDAC6-231ENST00000488905 VCAM1P19320 739 aa22.35■■□□□ 1.17
HDAC6-231ENST00000488905 PLCD1P51178 756 aa22.35■■□□□ 1.17
HDAC6-231ENST00000488905 USP17L24Q0WX57 530 aa22.35■■□□□ 1.17
HDAC6-231ENST00000488905 SLC9C2Q5TAH2 1124 aa22.35■■□□□ 1.17
HDAC6-231ENST00000488905 TRMT44Q8IYL2 757 aaKnown RBP22.35■■□□□ 1.17
HDAC6-231ENST00000488905 PPIL4Q8WUA2 492 aaKnown RBP eCLIP22.35■■□□□ 1.17
HDAC6-231ENST00000488905 USP6NLQ92738 828 aa22.35■■□□□ 1.17
HDAC6-231ENST00000488905 APBA2Q99767 749 aa22.35■■□□□ 1.17
HDAC6-231ENST00000488905 KIAA1683Q9H0B3 1180 aa22.35■■□□□ 1.17
HDAC6-231ENST00000488905 RLFQ13129 1914 aa22.35■■□□□ 1.17
HDAC6-231ENST00000488905 PARP14Q460N5 1801 aa22.34■■□□□ 1.17
HDAC6-231ENST00000488905 APBB1O00213 710 aa22.34■■□□□ 1.17
HDAC6-231ENST00000488905 POLR3DP05423 398 aaPredicted RBP22.34■■□□□ 1.17
HDAC6-231ENST00000488905 RGS2P41220 211 aa22.34■■□□□ 1.17
HDAC6-231ENST00000488905 MORN1Q5T089 497 aa22.34■■□□□ 1.17
HDAC6-231ENST00000488905 PLEKHH3Q7Z736 793 aa22.34■■□□□ 1.17
HDAC6-231ENST00000488905 ACER1Q8TDN7 264 aa22.34■■□□□ 1.17
HDAC6-231ENST00000488905 DNAJC2Q99543 621 aaKnown RBP22.34■■□□□ 1.17
HDAC6-231ENST00000488905 CRNKL1Q9BZJ0 848 aaKnown RBP22.34■■□□□ 1.17
HDAC6-231ENST00000488905 NBPF3Q9H094 633 aa22.34■■□□□ 1.17
HDAC6-231ENST00000488905 CABP5Q9NP86 173 aa22.34■■□□□ 1.17
HDAC6-231ENST00000488905 OGDHLQ9ULD0 1010 aa22.34■■□□□ 1.17
HDAC6-231ENST00000488905 RABGAP1Q9Y3P9 1069 aa22.34■■□□□ 1.17
HDAC6-231ENST00000488905 ZNF236Q9UL36 1845 aa22.34■■□□□ 1.17
HDAC6-231ENST00000488905 COL6A3P12111 3177 aa22.33■■□□□ 1.17
HDAC6-231ENST00000488905 A0A1W2PPC1 479 aa22.33■■□□□ 1.17
HDAC6-231ENST00000488905 GOLIM4O00461 696 aa22.33■■□□□ 1.17
HDAC6-231ENST00000488905 HMMRO75330 724 aa22.33■■□□□ 1.17
HDAC6-231ENST00000488905 CNMDO75829 334 aa22.33■■□□□ 1.17
HDAC6-231ENST00000488905 MNX1P50219 401 aaPredicted RBP22.33■■□□□ 1.17
HDAC6-231ENST00000488905 GABPAQ06546 454 aa22.33■■□□□ 1.17
HDAC6-231ENST00000488905 CATSPERGQ6ZRH7 1159 aa22.33■■□□□ 1.17
HDAC6-231ENST00000488905 RPAP2Q8IXW5 612 aaPredicted RBP22.33■■□□□ 1.17
HDAC6-231ENST00000488905 CWC22Q9HCG8 908 aaKnown RBP22.33■■□□□ 1.17
HDAC6-231ENST00000488905 DDX19BQ9UMR2 479 aa22.33■■□□□ 1.17
HDAC6-231ENST00000488905 ZNF532Q9HCE3 1301 aa22.32■■□□□ 1.16
HDAC6-231ENST00000488905 TCRBV5S4A2TA0A5A2 114 aa22.32■■□□□ 1.16
HDAC6-231ENST00000488905 IFIT2P09913 472 aaKnown RBP22.32■■□□□ 1.16
HDAC6-231ENST00000488905 GUCY1A2P33402 732 aa22.32■■□□□ 1.16
HDAC6-231ENST00000488905 CCNA1P78396 465 aa22.32■■□□□ 1.16
HDAC6-231ENST00000488905 CCL14Q16627 93 aa22.32■■□□□ 1.16
HDAC6-231ENST00000488905 LBX2Q6XYB7 198 aa22.32■■□□□ 1.16
HDAC6-231ENST00000488905 C7orf61Q8IZ16 206 aa22.32■■□□□ 1.16
HDAC6-231ENST00000488905 C11orf49Q9H6J7 331 aa22.32■■□□□ 1.16
HDAC6-231ENST00000488905 MCM9Q9NXL9 1143 aa22.32■■□□□ 1.16
HDAC6-231ENST00000488905 EVX2Q03828 476 aa22.31■■□□□ 1.16
HDAC6-231ENST00000488905 CACNB2Q08289 660 aaPredicted RBP22.31■■□□□ 1.16
HDAC6-231ENST00000488905 SIRT2Q8IXJ6 389 aa22.31■■□□□ 1.16
HDAC6-231ENST00000488905 ZBTB40Q9NUA8 1239 aa22.31■■□□□ 1.16
HDAC6-231ENST00000488905 COG6Q9Y2V7 657 aa22.31■■□□□ 1.16
HDAC6-231ENST00000488905 SPDYE16A6NNV3 312 aaPredicted RBP22.3■■□□□ 1.16
HDAC6-231ENST00000488905 MAP2K5Q13163 448 aa22.3■■□□□ 1.16
HDAC6-231ENST00000488905 SEPT2Q15019 361 aa22.3■■□□□ 1.16
HDAC6-231ENST00000488905 LCORLQ8N3X6 602 aa22.3■■□□□ 1.16
HDAC6-231ENST00000488905 SDR42E1Q8WUS8 393 aa22.3■■□□□ 1.16
HDAC6-231ENST00000488905 RPAP3Q9H6T3 665 aaPredicted RBP22.3■■□□□ 1.16
HDAC6-231ENST00000488905 GLRX3O76003 335 aaKnown RBP22.29■■□□□ 1.16
HDAC6-231ENST00000488905 EDC3Q96F86 508 aaKnown RBP22.29■■□□□ 1.16
HDAC6-231ENST00000488905 DCP1AQ9NPI6 582 aaPredicted RBP22.29■■□□□ 1.16
HDAC6-231ENST00000488905 STAP2Q9UGK3 403 aa22.29■■□□□ 1.16
HDAC6-231ENST00000488905 PFASO15067 1338 aa22.29■■□□□ 1.16
HDAC6-231ENST00000488905 LAMA2P24043 3122 aaKnown RBP22.28■■□□□ 1.16
HDAC6-231ENST00000488905 MPHOSPH10O00566 681 aaKnown RBP22.28■■□□□ 1.16
HDAC6-231ENST00000488905 RAB11FIP3O75154 756 aa22.28■■□□□ 1.16
HDAC6-231ENST00000488905 CCND3P30281 292 aaPredicted RBP22.28■■□□□ 1.16
HDAC6-231ENST00000488905 WDR78Q5VTH9 848 aa22.28■■□□□ 1.16
HDAC6-231ENST00000488905 BCL11AQ9H165 835 aa22.28■■□□□ 1.16
HDAC6-231ENST00000488905 BTBD7Q9P203 1132 aa22.28■■□□□ 1.16
HDAC6-231ENST00000488905 COL11A1P12107 1806 aaPredicted RBP22.28■■□□□ 1.16
HDAC6-231ENST00000488905 ARMT1Q9H993 441 aa22.27■■□□□ 1.16
HDAC6-231ENST00000488905 PAG1Q9NWQ8 432 aa22.27■■□□□ 1.16
HDAC6-231ENST00000488905 ZMYND8Q9ULU4 1186 aaPredicted RBP22.27■■□□□ 1.16
HDAC6-231ENST00000488905 A0A1W2PRG0 241 aa22.26■■□□□ 1.15
HDAC6-231ENST00000488905 SLC15A5A6NIM6 579 aa22.26■■□□□ 1.15
HDAC6-231ENST00000488905 CYP2D6P10635 497 aa22.26■■□□□ 1.15
HDAC6-231ENST00000488905 PTPREP23469 700 aa22.26■■□□□ 1.15
HDAC6-231ENST00000488905 ADD2P35612 726 aa22.26■■□□□ 1.15
HDAC6-231ENST00000488905 GRB14Q14449 540 aa22.26■■□□□ 1.15
HDAC6-231ENST00000488905 LHX8Q68G74 356 aa22.26■■□□□ 1.15
HDAC6-231ENST00000488905 TMEM179Q6ZVK1 233 aa22.26■■□□□ 1.15
HDAC6-231ENST00000488905 SLC44A5Q8NCS7 719 aa22.26■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms