RNA–Protein interactions for RNA: ENST00000488543.1

HDAC6-230, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 2,484 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-230ENST00000488543 GJB4Q9NTQ9 266 aa14.12□□□□□ -0.15
HDAC6-230ENST00000488543 SCAF8Q9UPN6 1271 aaKnown RBP14.12□□□□□ -0.15
HDAC6-230ENST00000488543 CLRN2A0PK11 232 aa14.12□□□□□ -0.15
HDAC6-230ENST00000488543 FZD9O00144 591 aa14.12□□□□□ -0.15
HDAC6-230ENST00000488543 CDKL5O76039 1030 aa14.12□□□□□ -0.15
HDAC6-230ENST00000488543 SAMD1Q6SPF0 538 aaPredicted RBP14.12□□□□□ -0.15
HDAC6-230ENST00000488543 SYNE3Q6ZMZ3 975 aa14.12□□□□□ -0.15
HDAC6-230ENST00000488543 C8orf76Q96K31 380 aa14.12□□□□□ -0.15
HDAC6-230ENST00000488543 AIFM3Q96NN9 605 aa14.12□□□□□ -0.15
HDAC6-230ENST00000488543 TFIP11Q9UBB9 837 aaKnown RBP14.12□□□□□ -0.15
HDAC6-230ENST00000488543 FAM198AQ9UFP1 575 aa14.12□□□□□ -0.15
HDAC6-230ENST00000488543 ELP1O95163 1332 aa14.11□□□□□ -0.15
HDAC6-230ENST00000488543 ZNF541Q9H0D2 1346 aa14.11□□□□□ -0.15
HDAC6-230ENST00000488543 STK36Q9NRP7 1315 aa14.11□□□□□ -0.15
HDAC6-230ENST00000488543 MYH6P13533 1939 aa14.11□□□□□ -0.15
HDAC6-230ENST00000488543 RTN1Q16799 776 aa14.11□□□□□ -0.15
HDAC6-230ENST00000488543 CSPP1Q1MSJ5 1256 aa14.11□□□□□ -0.15
HDAC6-230ENST00000488543 RBM26Q5T8P6 1007 aaKnown RBP14.11□□□□□ -0.15
HDAC6-230ENST00000488543 RGS22Q8NE09 1264 aa14.11□□□□□ -0.15
HDAC6-230ENST00000488543 FBXO18Q8NFZ0 1043 aa14.11□□□□□ -0.15
HDAC6-230ENST00000488543 PSME4Q14997 1843 aa14.11□□□□□ -0.15
HDAC6-230ENST00000488543 MYO3BQ8WXR4 1341 aa14.11□□□□□ -0.15
HDAC6-230ENST00000488543 IFNAR1P17181 557 aa14.1□□□□□ -0.15
HDAC6-230ENST00000488543 PDE4BQ07343 736 aa14.1□□□□□ -0.15
HDAC6-230ENST00000488543 CPLX2Q6PUV4 134 aaKnown RBP14.1□□□□□ -0.15
HDAC6-230ENST00000488543 AGBL3Q8NEM8 1001 aa14.1□□□□□ -0.15
HDAC6-230ENST00000488543 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP14.1□□□□□ -0.15
HDAC6-230ENST00000488543 ARFGEF1Q9Y6D6 1849 aa14.1□□□□□ -0.15
HDAC6-230ENST00000488543 SPDYE2BA6NHP3 402 aa14.1□□□□□ -0.15
HDAC6-230ENST00000488543 UBE2Q2LH0YL09 131 aa14.1□□□□□ -0.15
HDAC6-230ENST00000488543 FMNL1O95466 1100 aaPredicted RBP14.1□□□□□ -0.15
HDAC6-230ENST00000488543 SPDYE6P0CI01 402 aa14.1□□□□□ -0.15
HDAC6-230ENST00000488543 TNIP1Q15025 636 aa14.1□□□□□ -0.15
HDAC6-230ENST00000488543 DLGAP5Q15398 846 aa14.1□□□□□ -0.15
HDAC6-230ENST00000488543 NBPF9Q3BBW0 867 aa14.1□□□□□ -0.15
HDAC6-230ENST00000488543 NBPF11Q86T75 865 aa14.1□□□□□ -0.15
HDAC6-230ENST00000488543 IQCA1Q86XH1 822 aa14.1□□□□□ -0.15
HDAC6-230ENST00000488543 DHX37Q8IY37 1157 aaKnown RBP14.1□□□□□ -0.15
HDAC6-230ENST00000488543 LEO1Q8WVC0 666 aaPredicted RBP14.1□□□□□ -0.15
HDAC6-230ENST00000488543 OSBPL5Q9H0X9 879 aaPredicted RBP14.1□□□□□ -0.15
HDAC6-230ENST00000488543 MKNK2Q9HBH9 465 aa14.1□□□□□ -0.15
HDAC6-230ENST00000488543 DDTLA6NHG4 134 aaPredicted RBP14.09□□□□□ -0.15
HDAC6-230ENST00000488543 GMPSP49915 693 aaPredicted RBP14.09□□□□□ -0.15
HDAC6-230ENST00000488543 AMOTL1Q8IY63 956 aa14.09□□□□□ -0.15
HDAC6-230ENST00000488543 FANCBQ8NB91 859 aa14.09□□□□□ -0.15
HDAC6-230ENST00000488543 ALG1Q9BT22 464 aa14.09□□□□□ -0.15
HDAC6-230ENST00000488543 HDAC9Q9UKV0 1011 aa14.09□□□□□ -0.15
HDAC6-230ENST00000488543 FAM196BA6NMK8 535 aa14.09□□□□□ -0.15
HDAC6-230ENST00000488543 TCP10L2B9ZVM9 353 aa14.09□□□□□ -0.15
HDAC6-230ENST00000488543 LMNB1P20700 586 aa14.09□□□□□ -0.15
HDAC6-230ENST00000488543 CDK8P49336 464 aa14.09□□□□□ -0.15
HDAC6-230ENST00000488543 EIF6P56537 245 aaKnown RBP14.09□□□□□ -0.15
HDAC6-230ENST00000488543 IFIT1BQ5T764 474 aaKnown RBP14.09□□□□□ -0.15
HDAC6-230ENST00000488543 PDZRN4Q6ZMN7 1036 aaPredicted RBP14.09□□□□□ -0.15
HDAC6-230ENST00000488543 SH3BP5LQ7L8J4 393 aa14.09□□□□□ -0.15
HDAC6-230ENST00000488543 SYAP1Q96A49 352 aaPredicted RBP14.09□□□□□ -0.15
HDAC6-230ENST00000488543 SCAND2PQ9GZW5 306 aaPredicted RBP14.09□□□□□ -0.15
HDAC6-230ENST00000488543 TFAP4Q01664 338 aa14.08□□□□□ -0.15
HDAC6-230ENST00000488543 RCSD1Q6JBY9 416 aa14.08□□□□□ -0.15
HDAC6-230ENST00000488543 SAMD7Q7Z3H4 446 aa14.08□□□□□ -0.15
HDAC6-230ENST00000488543 NUP133Q8WUM0 1156 aa14.08□□□□□ -0.15
HDAC6-230ENST00000488543 SLC26A6Q9BXS9 759 aa14.08□□□□□ -0.15
HDAC6-230ENST00000488543 CCDC39Q9UFE4 941 aa14.08□□□□□ -0.15
HDAC6-230ENST00000488543 TSPY2A6NKD2 308 aa14.08□□□□□ -0.16
HDAC6-230ENST00000488543 KIF28PB7ZC32 967 aa14.08□□□□□ -0.16
HDAC6-230ENST00000488543 WNT10BO00744 389 aa14.08□□□□□ -0.16
HDAC6-230ENST00000488543 ZNF500O60304 480 aaPredicted RBP14.08□□□□□ -0.16
HDAC6-230ENST00000488543 NT5C2P49902 561 aa14.08□□□□□ -0.16
HDAC6-230ENST00000488543 SSRP1Q08945 709 aaKnown RBP14.08□□□□□ -0.16
HDAC6-230ENST00000488543 TROAPQ12815 778 aa14.08□□□□□ -0.16
HDAC6-230ENST00000488543 ZSCAN29Q8IWY8 852 aaPredicted RBP14.08□□□□□ -0.16
HDAC6-230ENST00000488543 SPATA32Q96LK8 384 aa14.08□□□□□ -0.16
HDAC6-230ENST00000488543 IDI2Q9BXS1 227 aa14.08□□□□□ -0.16
HDAC6-230ENST00000488543 IL17RBQ9NRM6 502 aa14.08□□□□□ -0.16
HDAC6-230ENST00000488543 TPM2P07951 284 aa14.07□□□□□ -0.16
HDAC6-230ENST00000488543 RASA1P20936 1047 aa14.07□□□□□ -0.16
HDAC6-230ENST00000488543 GUCY1A2P33402 732 aa14.07□□□□□ -0.16
HDAC6-230ENST00000488543 KIF23Q02241 960 aaPredicted RBP14.07□□□□□ -0.16
HDAC6-230ENST00000488543 FUT2Q10981 343 aa14.07□□□□□ -0.16
HDAC6-230ENST00000488543 CCDC183Q5T5S1 534 aa14.07□□□□□ -0.16
HDAC6-230ENST00000488543 CRACR2BQ8N4Y2 399 aaPredicted RBP14.07□□□□□ -0.16
HDAC6-230ENST00000488543 FTOQ9C0B1 505 aaKnown RBP eCLIP14.07□□□□□ -0.16
HDAC6-230ENST00000488543 TTC12Q9H892 705 aaPredicted RBP14.07□□□□□ -0.16
HDAC6-230ENST00000488543 MYOZ2Q9NPC6 264 aa14.07□□□□□ -0.16
HDAC6-230ENST00000488543 ZNF70Q9UC06 446 aaPredicted RBP14.07□□□□□ -0.16
HDAC6-230ENST00000488543 CCDC196A0A1B0GTZ2 297 aa14.07□□□□□ -0.16
HDAC6-230ENST00000488543 DDAH1O94760 285 aa14.07□□□□□ -0.16
HDAC6-230ENST00000488543 HS1BP3Q53T59 392 aa14.07□□□□□ -0.16
HDAC6-230ENST00000488543 KRT40Q6A162 431 aa14.07□□□□□ -0.16
HDAC6-230ENST00000488543 C16orf86Q6ZW13 317 aa14.07□□□□□ -0.16
HDAC6-230ENST00000488543 CATIPQ7Z7H3 387 aa14.07□□□□□ -0.16
HDAC6-230ENST00000488543 MICALL2Q8IY33 904 aa14.07□□□□□ -0.16
HDAC6-230ENST00000488543 CMTR1Q8N1G2 835 aaKnown RBP14.07□□□□□ -0.16
HDAC6-230ENST00000488543 ANKS1AQ92625 1134 aa14.07□□□□□ -0.16
HDAC6-230ENST00000488543 PGBD1Q96JS3 809 aa14.07□□□□□ -0.16
HDAC6-230ENST00000488543 USP28Q96RU2 1077 aa14.07□□□□□ -0.16
HDAC6-230ENST00000488543 VEZTQ9HBM0 779 aa14.07□□□□□ -0.16
HDAC6-230ENST00000488543 CNOT7Q9UIV1 285 aaKnown RBP14.07□□□□□ -0.16
HDAC6-230ENST00000488543 AP5Z1O43299 807 aa14.06□□□□□ -0.16
HDAC6-230ENST00000488543 GABPAQ06546 454 aa14.06□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms