RNA–Protein interactions for RNA: ENST00000487676.1

HLA-DQB1-209, Transcript of major histocompatibility complex, class II, DQ beta 1, humanhuman

Gene HLA-DQB1, Length 4,644 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQB1-209ENST00000487676 SASH1O94885 1247 aa17.06■□□□□ 0.32
HLA-DQB1-209ENST00000487676 NDUFA10O95299 355 aa17.06■□□□□ 0.32
HLA-DQB1-209ENST00000487676 RPSAP08865 295 aaKnown RBP17.06■□□□□ 0.32
HLA-DQB1-209ENST00000487676 MTMR3Q13615 1198 aa17.06■□□□□ 0.32
HLA-DQB1-209ENST00000487676 RBBP5Q15291 538 aaKnown RBP17.06■□□□□ 0.32
HLA-DQB1-209ENST00000487676 EMBQ6PCB8 327 aa17.06■□□□□ 0.32
HLA-DQB1-209ENST00000487676 LDHAL6AQ6ZMR3 332 aa17.06■□□□□ 0.32
HLA-DQB1-209ENST00000487676 LMNTD2Q8IXW0 634 aa17.06■□□□□ 0.32
HLA-DQB1-209ENST00000487676 SLTMQ9NWH9 1034 aaKnown RBP eCLIP17.06■□□□□ 0.32
HLA-DQB1-209ENST00000487676 PEX19P40855 299 aa17.05■□□□□ 0.32
HLA-DQB1-209ENST00000487676 PPP1R2P41236 205 aa17.05■□□□□ 0.32
HLA-DQB1-209ENST00000487676 FNBP4Q8N3X1 1017 aaPredicted RBP17.05■□□□□ 0.32
HLA-DQB1-209ENST00000487676 KCNJ14Q9UNX9 436 aa17.05■□□□□ 0.32
HLA-DQB1-209ENST00000487676 DNM2P50570 870 aa17.05■□□□□ 0.32
HLA-DQB1-209ENST00000487676 RSRC2Q7L4I2 434 aaKnown RBP17.05■□□□□ 0.32
HLA-DQB1-209ENST00000487676 PACS2Q86VP3 889 aa17.05■□□□□ 0.32
HLA-DQB1-209ENST00000487676 STAMQ92783 540 aa17.05■□□□□ 0.32
HLA-DQB1-209ENST00000487676 LGR6Q9HBX8 967 aa17.05■□□□□ 0.32
HLA-DQB1-209ENST00000487676 QRICH2Q9H0J4 1663 aa17.05■□□□□ 0.32
HLA-DQB1-209ENST00000487676 FBF1Q8TES7 1133 aa17.05■□□□□ 0.32
HLA-DQB1-209ENST00000487676 ESR2Q92731 530 aa17.05■□□□□ 0.32
HLA-DQB1-209ENST00000487676 ADGRB2O60241 1585 aa17.05■□□□□ 0.32
HLA-DQB1-209ENST00000487676 PLEKHG2Q9H7P9 1386 aa17.05■□□□□ 0.32
HLA-DQB1-209ENST00000487676 H7C1D1 291 aa17.05■□□□□ 0.32
HLA-DQB1-209ENST00000487676 HNRNPH1P31943 449 aaKnown RBP17.05■□□□□ 0.32
HLA-DQB1-209ENST00000487676 CCDC6Q16204 474 aa17.05■□□□□ 0.32
HLA-DQB1-209ENST00000487676 CCDC26Q8TAB7 109 aa17.05■□□□□ 0.32
HLA-DQB1-209ENST00000487676 LMBR1Q8WVP7 490 aa17.05■□□□□ 0.32
HLA-DQB1-209ENST00000487676 KCNB2Q92953 911 aa17.04■□□□□ 0.32
HLA-DQB1-209ENST00000487676 IQCDQ96DY2 449 aa17.04■□□□□ 0.32
HLA-DQB1-209ENST00000487676 RAB34Q9BZG1 259 aa17.04■□□□□ 0.32
HLA-DQB1-209ENST00000487676 COPRSQ9NQ92 184 aa17.04■□□□□ 0.32
HLA-DQB1-209ENST00000487676 BTBD18B2RXH4 712 aa17.04■□□□□ 0.32
HLA-DQB1-209ENST00000487676 UQCRFS1P1P0C7P4 283 aa17.04■□□□□ 0.32
HLA-DQB1-209ENST00000487676 SUGP1Q8IWZ8 645 aaKnown RBP17.04■□□□□ 0.32
HLA-DQB1-209ENST00000487676 IL17RAQ96F46 866 aa17.04■□□□□ 0.32
HLA-DQB1-209ENST00000487676 SPAG5Q96R06 1193 aa17.04■□□□□ 0.32
HLA-DQB1-209ENST00000487676 EYA2O00167 538 aa17.04■□□□□ 0.32
HLA-DQB1-209ENST00000487676 MTF1Q14872 753 aa17.04■□□□□ 0.32
HLA-DQB1-209ENST00000487676 KRT71Q3SY84 523 aa17.04■□□□□ 0.32
HLA-DQB1-209ENST00000487676 RESP18Q5W5W9 173 aa17.04■□□□□ 0.32
HLA-DQB1-209ENST00000487676 RNMTO43148 476 aaKnown RBP17.03■□□□□ 0.32
HLA-DQB1-209ENST00000487676 ZMYM1Q5SVZ6 1142 aa17.03■□□□□ 0.32
HLA-DQB1-209ENST00000487676 MYL10Q9BUA6 226 aa17.03■□□□□ 0.32
HLA-DQB1-209ENST00000487676 NR1D1P20393 614 aa17.03■□□□□ 0.32
HLA-DQB1-209ENST00000487676 PCK1P35558 622 aa17.03■□□□□ 0.32
HLA-DQB1-209ENST00000487676 SLC39A6Q13433 755 aa17.03■□□□□ 0.32
HLA-DQB1-209ENST00000487676 TRIM65Q6PJ69 517 aa17.03■□□□□ 0.32
HLA-DQB1-209ENST00000487676 ZBTB3Q9H5J0 574 aa17.03■□□□□ 0.32
HLA-DQB1-209ENST00000487676 MRPL44Q9H9J2 332 aaKnown RBP17.03■□□□□ 0.32
HLA-DQB1-209ENST00000487676 SUGCTQ9HAC7 445 aa17.03■□□□□ 0.32
HLA-DQB1-209ENST00000487676 ABCF2Q9UG63 623 aa17.03■□□□□ 0.32
HLA-DQB1-209ENST00000487676 MCM7P33993 719 aa17.03■□□□□ 0.32
HLA-DQB1-209ENST00000487676 CTNNA1P35221 906 aaKnown RBP17.03■□□□□ 0.32
HLA-DQB1-209ENST00000487676 RNASE9P60153 205 aaKnown RBP17.03■□□□□ 0.32
HLA-DQB1-209ENST00000487676 HOOK3Q86VS8 718 aa17.03■□□□□ 0.32
HLA-DQB1-209ENST00000487676 TC2NQ8N9U0 490 aa17.03■□□□□ 0.32
HLA-DQB1-209ENST00000487676 RASAL2Q9UJF2 1139 aa17.03■□□□□ 0.32
HLA-DQB1-209ENST00000487676 KIAA1210Q9ULL0 1709 aa17.03■□□□□ 0.32
HLA-DQB1-209ENST00000487676 ATP2B2Q01814 1243 aa17.03■□□□□ 0.32
HLA-DQB1-209ENST00000487676 PPARDQ03181 441 aa17.03■□□□□ 0.32
HLA-DQB1-209ENST00000487676 C2orf54Q08AI8 447 aa17.03■□□□□ 0.32
HLA-DQB1-209ENST00000487676 ARMC9Q7Z3E5 817 aa17.03■□□□□ 0.32
HLA-DQB1-209ENST00000487676 MSANTD4Q8NCY6 345 aa17.03■□□□□ 0.32
HLA-DQB1-209ENST00000487676 SH3TC1Q8TE82 1336 aa17.03■□□□□ 0.32
HLA-DQB1-209ENST00000487676 TARSL2A2RTX5 802 aaKnown RBP17.02■□□□□ 0.32
HLA-DQB1-209ENST00000487676 SEMA3EO15041 775 aa17.02■□□□□ 0.32
HLA-DQB1-209ENST00000487676 KLHL7Q8IXQ5 586 aa17.02■□□□□ 0.32
HLA-DQB1-209ENST00000487676 TBC1D31Q96DN5 1066 aa17.02■□□□□ 0.32
HLA-DQB1-209ENST00000487676 MEFVO15553 781 aaPredicted RBP17.02■□□□□ 0.32
HLA-DQB1-209ENST00000487676 TRIM7Q9C029 511 aa17.02■□□□□ 0.32
HLA-DQB1-209ENST00000487676 BLZF1Q9H2G9 400 aa17.02■□□□□ 0.32
HLA-DQB1-209ENST00000487676 KAT14Q9H8E8 782 aa17.02■□□□□ 0.32
HLA-DQB1-209ENST00000487676 AMOTL2Q9Y2J4 779 aa17.02■□□□□ 0.32
HLA-DQB1-209ENST00000487676 CLTAP09496 248 aa17.02■□□□□ 0.31
HLA-DQB1-209ENST00000487676 ELF1P32519 619 aa17.02■□□□□ 0.31
HLA-DQB1-209ENST00000487676 IRAK1P51617 712 aa17.02■□□□□ 0.31
HLA-DQB1-209ENST00000487676 RTL9Q8NET4 1388 aa17.02■□□□□ 0.31
HLA-DQB1-209ENST00000487676 FGAP02671 866 aa17.01■□□□□ 0.31
HLA-DQB1-209ENST00000487676 CCDC63Q8NA47 563 aa17.01■□□□□ 0.31
HLA-DQB1-209ENST00000487676 GNL3Q9BVP2 549 aaKnown RBP eCLIP17.01■□□□□ 0.31
HLA-DQB1-209ENST00000487676 TUBE1Q9UJT0 475 aa17.01■□□□□ 0.31
HLA-DQB1-209ENST00000487676 GUCY2DQ02846 1103 aa17.01■□□□□ 0.31
HLA-DQB1-209ENST00000487676 TMEM266Q2M3C6 531 aa17.01■□□□□ 0.31
HLA-DQB1-209ENST00000487676 TTC38Q5R3I4 469 aa17.01■□□□□ 0.31
HLA-DQB1-209ENST00000487676 ZFYVE27Q5T4F4 411 aa17.01■□□□□ 0.31
HLA-DQB1-209ENST00000487676 IFIT1BQ5T764 474 aaKnown RBP17.01■□□□□ 0.31
HLA-DQB1-209ENST00000487676 DTHD1Q6ZMT9 781 aa17.01■□□□□ 0.31
HLA-DQB1-209ENST00000487676 SMIM23A6NLE4 172 aa17.01■□□□□ 0.31
HLA-DQB1-209ENST00000487676 NEURL1BA8MQ27 555 aa17.01■□□□□ 0.31
HLA-DQB1-209ENST00000487676 EIF3HO15372 352 aaKnown RBP eCLIP17.01■□□□□ 0.31
HLA-DQB1-209ENST00000487676 CALML3P27482 149 aa17.01■□□□□ 0.31
HLA-DQB1-209ENST00000487676 TYW1BQ6NUM6 668 aa17.01■□□□□ 0.31
HLA-DQB1-209ENST00000487676 KLC4Q9NSK0 619 aa17.01■□□□□ 0.31
HLA-DQB1-209ENST00000487676 ARID5AQ03989 594 aa17.01■□□□□ 0.31
HLA-DQB1-209ENST00000487676 ANKLE2Q86XL3 938 aa17.01■□□□□ 0.31
HLA-DQB1-209ENST00000487676 GRAMD1CQ8IYS0 662 aa17.01■□□□□ 0.31
HLA-DQB1-209ENST00000487676 PNKPQ96T60 521 aa17■□□□□ 0.31
HLA-DQB1-209ENST00000487676 LRRC27Q9C0I9 530 aa17■□□□□ 0.31
HLA-DQB1-209ENST00000487676 ABCC3O15438 1527 aa17■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms