RNA–Protein interactions for RNA: ENST00000486235.5

TMEM39A-209, Transcript of transmembrane protein 39A, humanhuman

TSL 3

Gene TMEM39A, Length 885 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-209ENST00000486235 PRDM10Q9NQV6 1147 aa8.66□□□□□ -1.02
TMEM39A-209ENST00000486235 FER1L6Q2WGJ9 1857 aa8.66□□□□□ -1.02
TMEM39A-209ENST00000486235 ZNF541Q9H0D2 1346 aa8.65□□□□□ -1.02
TMEM39A-209ENST00000486235 IQCA1LA6NCM1 817 aa8.65□□□□□ -1.02
TMEM39A-209ENST00000486235 TMEM88BA6NKF7 163 aa8.65□□□□□ -1.02
TMEM39A-209ENST00000486235 DIAPH1O60610 1272 aaKnown RBP8.65□□□□□ -1.02
TMEM39A-209ENST00000486235 CAMTA2O94983 1202 aa8.65□□□□□ -1.02
TMEM39A-209ENST00000486235 SRGNP10124 158 aa8.65□□□□□ -1.02
TMEM39A-209ENST00000486235 INPP5BP32019 993 aa8.65□□□□□ -1.02
TMEM39A-209ENST00000486235 IL6STP40189 918 aaPredicted RBP8.65□□□□□ -1.02
TMEM39A-209ENST00000486235 LBX1P52954 281 aa8.65□□□□□ -1.02
TMEM39A-209ENST00000486235 TEFQ10587 303 aa8.65□□□□□ -1.02
TMEM39A-209ENST00000486235 CNGB1Q14028 1251 aaPredicted RBP8.65□□□□□ -1.02
TMEM39A-209ENST00000486235 GRIK5Q16478 980 aa8.65□□□□□ -1.02
TMEM39A-209ENST00000486235 SOGA3Q5TF21 947 aa8.65□□□□□ -1.02
TMEM39A-209ENST00000486235 ZNF790Q6PG37 636 aa8.65□□□□□ -1.02
TMEM39A-209ENST00000486235 DHX32Q7L7V1 743 aaKnown RBP8.65□□□□□ -1.02
TMEM39A-209ENST00000486235 FBXO11Q86XK2 927 aa8.65□□□□□ -1.02
TMEM39A-209ENST00000486235 IL17REQ8NFR9 667 aa8.65□□□□□ -1.02
TMEM39A-209ENST00000486235 MASTLQ96GX5 879 aa8.65□□□□□ -1.02
TMEM39A-209ENST00000486235 SLX4Q8IY92 1834 aa8.65□□□□□ -1.02
TMEM39A-209ENST00000486235 SCN7AQ01118 1682 aa8.65□□□□□ -1.03
TMEM39A-209ENST00000486235 DICER1Q9UPY3 1922 aaKnown RBP8.64□□□□□ -1.03
TMEM39A-209ENST00000486235 UBR2Q8IWV8 1755 aa8.64□□□□□ -1.03
TMEM39A-209ENST00000486235 U2SURPO15042 1029 aaKnown RBP8.64□□□□□ -1.03
TMEM39A-209ENST00000486235 KCNQ3O43525 872 aa8.64□□□□□ -1.03
TMEM39A-209ENST00000486235 EPB42P16452 691 aa8.64□□□□□ -1.03
TMEM39A-209ENST00000486235 NOS3P29474 1203 aa8.64□□□□□ -1.03
TMEM39A-209ENST00000486235 DGKZQ13574 1117 aa8.64□□□□□ -1.03
TMEM39A-209ENST00000486235 CCDC93Q567U6 631 aa8.64□□□□□ -1.03
TMEM39A-209ENST00000486235 OLFM4Q6UX06 510 aa8.64□□□□□ -1.03
TMEM39A-209ENST00000486235 WFDC8Q8IUA0 241 aa8.64□□□□□ -1.03
TMEM39A-209ENST00000486235 IFT43Q96FT9 208 aa8.64□□□□□ -1.03
TMEM39A-209ENST00000486235 FMNL2Q96PY5 1086 aa8.64□□□□□ -1.03
TMEM39A-209ENST00000486235 TEX13AQ9BXU3 409 aaPredicted RBP8.64□□□□□ -1.03
TMEM39A-209ENST00000486235 ZNF277Q9NRM2 450 aaPredicted RBP8.64□□□□□ -1.03
TMEM39A-209ENST00000486235 USP20Q9Y2K6 914 aa8.64□□□□□ -1.03
TMEM39A-209ENST00000486235 VIRMAQ69YN4 1812 aaKnown RBP8.64□□□□□ -1.03
TMEM39A-209ENST00000486235 RNF123Q5XPI4 1314 aa8.63□□□□□ -1.03
TMEM39A-209ENST00000486235 FAM177BA6PVY3 158 aa8.63□□□□□ -1.03
TMEM39A-209ENST00000486235 MAP3K6O95382 1288 aa8.63□□□□□ -1.03
TMEM39A-209ENST00000486235 RARAP10276 462 aa8.63□□□□□ -1.03
TMEM39A-209ENST00000486235 IGFBP4P22692 258 aa8.63□□□□□ -1.03
TMEM39A-209ENST00000486235 EPHX2P34913 555 aa8.63□□□□□ -1.03
TMEM39A-209ENST00000486235 PTK7Q13308 1070 aa8.63□□□□□ -1.03
TMEM39A-209ENST00000486235 CC2D1BQ5T0F9 858 aaKnown RBP8.63□□□□□ -1.03
TMEM39A-209ENST00000486235 MAP1SQ66K74 1059 aaPredicted RBP8.63□□□□□ -1.03
TMEM39A-209ENST00000486235 NBPF5PQ86XG9 351 aaPredicted RBP8.63□□□□□ -1.03
TMEM39A-209ENST00000486235 HACL1Q9UJ83 578 aa8.63□□□□□ -1.03
TMEM39A-209ENST00000486235 CACNA1SQ13698 1873 aa8.63□□□□□ -1.03
TMEM39A-209ENST00000486235 PRAMEF22A3QJZ6 481 aa8.62□□□□□ -1.03
TMEM39A-209ENST00000486235 GNAT3A8MTJ3 354 aa8.62□□□□□ -1.03
TMEM39A-209ENST00000486235 HSPA8P11142 646 aaKnown RBP8.62□□□□□ -1.03
TMEM39A-209ENST00000486235 NPR1P16066 1061 aa8.62□□□□□ -1.03
TMEM39A-209ENST00000486235 FKBP4Q02790 459 aaKnown RBP eCLIP8.62□□□□□ -1.03
TMEM39A-209ENST00000486235 PCSK7Q16549 785 aa8.62□□□□□ -1.03
TMEM39A-209ENST00000486235 TRPM4Q8TD43 1214 aa8.62□□□□□ -1.03
TMEM39A-209ENST00000486235 SMG9Q9H0W8 520 aaKnown RBP8.62□□□□□ -1.03
TMEM39A-209ENST00000486235 ABT1Q9ULW3 272 aaKnown RBP8.62□□□□□ -1.03
TMEM39A-209ENST00000486235 USP16Q9Y5T5 823 aa8.62□□□□□ -1.03
TMEM39A-209ENST00000486235 BTBD11A6QL63 1104 aa8.61□□□□□ -1.03
TMEM39A-209ENST00000486235 MICAL2O94851 1124 aa8.61□□□□□ -1.03
TMEM39A-209ENST00000486235 ARSDP51689 593 aa8.61□□□□□ -1.03
TMEM39A-209ENST00000486235 GRM1Q13255 1194 aa8.61□□□□□ -1.03
TMEM39A-209ENST00000486235 DEFB115Q30KQ5 88 aa8.61□□□□□ -1.03
TMEM39A-209ENST00000486235 ANKMY2Q8IV38 441 aa8.61□□□□□ -1.03
TMEM39A-209ENST00000486235 CNTROBQ8N137 903 aa8.61□□□□□ -1.03
TMEM39A-209ENST00000486235 SYNE4Q8N205 404 aa8.61□□□□□ -1.03
TMEM39A-209ENST00000486235 DTWD1Q8N5C7 304 aa8.61□□□□□ -1.03
TMEM39A-209ENST00000486235 ABHD8Q96I13 439 aa8.61□□□□□ -1.03
TMEM39A-209ENST00000486235 MEGF10Q96KG7 1140 aa8.61□□□□□ -1.03
TMEM39A-209ENST00000486235 WDR33Q9C0J8 1336 aaKnown RBP8.6□□□□□ -1.03
TMEM39A-209ENST00000486235 SCN4AP35499 1836 aa8.6□□□□□ -1.03
TMEM39A-209ENST00000486235 RASSF10A6NK89 507 aa8.6□□□□□ -1.03
TMEM39A-209ENST00000486235 USP17L15C9J2P7 530 aa8.6□□□□□ -1.03
TMEM39A-209ENST00000486235 USP17L10C9JJH3 530 aa8.6□□□□□ -1.03
TMEM39A-209ENST00000486235 USP17L13C9JLJ4 530 aa8.6□□□□□ -1.03
TMEM39A-209ENST00000486235 USP17L12C9JPN9 530 aa8.6□□□□□ -1.03
TMEM39A-209ENST00000486235 USP17L11C9JVI0 530 aa8.6□□□□□ -1.03
TMEM39A-209ENST00000486235 USP17L21D6R901 530 aa8.6□□□□□ -1.03
TMEM39A-209ENST00000486235 USP17L18D6R9N7 530 aa8.6□□□□□ -1.03
TMEM39A-209ENST00000486235 USP17L22D6RA61 530 aa8.6□□□□□ -1.03
TMEM39A-209ENST00000486235 USP17L17D6RBQ6 530 aa8.6□□□□□ -1.03
TMEM39A-209ENST00000486235 USP17L19D6RCP7 530 aa8.6□□□□□ -1.03
TMEM39A-209ENST00000486235 USP17L20D6RJB6 530 aa8.6□□□□□ -1.03
TMEM39A-209ENST00000486235 DEAF1O75398 565 aaPredicted RBP8.6□□□□□ -1.03
TMEM39A-209ENST00000486235 EIF2AK2P19525 551 aaKnown RBP8.6□□□□□ -1.03
TMEM39A-209ENST00000486235 IARSP41252 1262 aaKnown RBP8.6□□□□□ -1.03
TMEM39A-209ENST00000486235 FMR1Q06787 632 aaKnown RBP eCLIP8.6□□□□□ -1.03
TMEM39A-209ENST00000486235 USP17L24Q0WX57 530 aa8.6□□□□□ -1.03
TMEM39A-209ENST00000486235 KRTAP1-3Q8IUG1 177 aa8.6□□□□□ -1.03
TMEM39A-209ENST00000486235 FRRS1LQ9P0K9 344 aa8.6□□□□□ -1.03
TMEM39A-209ENST00000486235 NIP7Q9Y221 180 aaKnown RBP eCLIP8.6□□□□□ -1.03
TMEM39A-209ENST00000486235 ZNF652Q9Y2D9 606 aa8.6□□□□□ -1.03
TMEM39A-209ENST00000486235 KIF7Q2M1P5 1343 aa8.59□□□□□ -1.03
TMEM39A-209ENST00000486235 COL3A1P02461 1466 aaPredicted RBP8.59□□□□□ -1.03
TMEM39A-209ENST00000486235 BCORQ6W2J9 1755 aa8.59□□□□□ -1.03
TMEM39A-209ENST00000486235 ARFGEF2Q9Y6D5 1785 aa8.59□□□□□ -1.03
TMEM39A-209ENST00000486235 J3QW42 95 aa8.59□□□□□ -1.03
TMEM39A-209ENST00000486235 FZD9O00144 591 aa8.59□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 10 ms