RNA–Protein interactions for RNA: ENST00000485983.6

SRGAP3-207, Transcript of SLIT-ROBO Rho GTPase activating protein 3, humanhuman

TSL 1 (best)

Gene SRGAP3, Length 5,677 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRGAP3-207ENST00000485983 FAM160A1Q05DH4 1040 aa11.72□□□□□ -0.53
SRGAP3-207ENST00000485983 INTS4Q96HW7 963 aaKnown RBP11.72□□□□□ -0.53
SRGAP3-207ENST00000485983 BAG1Q99933 345 aaPredicted RBP11.72□□□□□ -0.53
SRGAP3-207ENST00000485983 ARPP21Q9UBL0 812 aaPredicted RBP11.72□□□□□ -0.53
SRGAP3-207ENST00000485983 SWAP70Q9UH65 585 aa11.72□□□□□ -0.53
SRGAP3-207ENST00000485983 ASIC3Q9UHC3 531 aa11.72□□□□□ -0.53
SRGAP3-207ENST00000485983 ZFYVE9O95405 1425 aa11.72□□□□□ -0.53
SRGAP3-207ENST00000485983 ABCC1P33527 1531 aa11.72□□□□□ -0.53
SRGAP3-207ENST00000485983 PFDN6O15212 129 aa11.72□□□□□ -0.53
SRGAP3-207ENST00000485983 TNNC2P02585 160 aa11.72□□□□□ -0.53
SRGAP3-207ENST00000485983 PAK1Q13153 545 aa11.72□□□□□ -0.53
SRGAP3-207ENST00000485983 KRT24Q2M2I5 525 aa11.72□□□□□ -0.53
SRGAP3-207ENST00000485983 NLGN1Q8N2Q7 840 aa11.72□□□□□ -0.53
SRGAP3-207ENST00000485983 IGSF22Q8N9C0 903 aa11.72□□□□□ -0.53
SRGAP3-207ENST00000485983 LLPHQ9BRT6 129 aaKnown RBP11.72□□□□□ -0.53
SRGAP3-207ENST00000485983 ASXL1Q8IXJ9 1541 aa11.72□□□□□ -0.53
SRGAP3-207ENST00000485983 WDR46O15213 610 aaKnown RBP11.72□□□□□ -0.53
SRGAP3-207ENST00000485983 RHOXF2BP0C7M4 288 aa11.72□□□□□ -0.53
SRGAP3-207ENST00000485983 DYMQ7RTS9 669 aa11.72□□□□□ -0.53
SRGAP3-207ENST00000485983 DPP9Q86TI2 863 aa11.72□□□□□ -0.53
SRGAP3-207ENST00000485983 RSPH3Q86UC2 560 aa11.72□□□□□ -0.53
SRGAP3-207ENST00000485983 TSPYL6Q8N831 410 aa11.72□□□□□ -0.53
SRGAP3-207ENST00000485983 MAIP1Q8WWC4 291 aa11.72□□□□□ -0.53
SRGAP3-207ENST00000485983 ORAI2Q96SN7 254 aa11.72□□□□□ -0.53
SRGAP3-207ENST00000485983 RHOXF2Q9BQY4 288 aa11.72□□□□□ -0.53
SRGAP3-207ENST00000485983 EIF4G3O43432 1585 aaKnown RBP11.72□□□□□ -0.53
SRGAP3-207ENST00000485983 ATP10BO94823 1461 aa11.71□□□□□ -0.53
SRGAP3-207ENST00000485983 EBAG9O00559 213 aa11.71□□□□□ -0.53
SRGAP3-207ENST00000485983 CUTAO60888 179 aa11.71□□□□□ -0.53
SRGAP3-207ENST00000485983 PDZD4Q76G19 769 aaPredicted RBP11.71□□□□□ -0.53
SRGAP3-207ENST00000485983 FLOT1O75955 427 aa11.71□□□□□ -0.53
SRGAP3-207ENST00000485983 TCP10L2B9ZVM9 353 aa11.71□□□□□ -0.53
SRGAP3-207ENST00000485983 CROCCP2Q86T23 111 aa11.71□□□□□ -0.53
SRGAP3-207ENST00000485983 CABP7Q86V35 215 aa11.71□□□□□ -0.53
SRGAP3-207ENST00000485983 MIS12Q9H081 205 aa11.71□□□□□ -0.53
SRGAP3-207ENST00000485983 PRDM10Q9NQV6 1147 aa11.71□□□□□ -0.53
SRGAP3-207ENST00000485983 MAPK8IP1Q9UQF2 711 aa11.71□□□□□ -0.53
SRGAP3-207ENST00000485983 PCDHB13Q9Y5F0 798 aa11.71□□□□□ -0.53
SRGAP3-207ENST00000485983 HMGB1P1B2RPK0 211 aaPredicted RBP11.71□□□□□ -0.54
SRGAP3-207ENST00000485983 FAM102BQ5T8I3 360 aa11.71□□□□□ -0.54
SRGAP3-207ENST00000485983 TRIM50Q86XT4 487 aa11.71□□□□□ -0.54
SRGAP3-207ENST00000485983 SNX21Q969T3 373 aa11.71□□□□□ -0.54
SRGAP3-207ENST00000485983 TBC1D7Q9P0N9 293 aa11.71□□□□□ -0.54
SRGAP3-207ENST00000485983 HESX1Q9UBX0 185 aa11.71□□□□□ -0.54
SRGAP3-207ENST00000485983 POLR2MP0CAP2 368 aa11.71□□□□□ -0.54
SRGAP3-207ENST00000485983 LIG4P49917 911 aa11.71□□□□□ -0.54
SRGAP3-207ENST00000485983 SARNPP82979 210 aaKnown RBP11.71□□□□□ -0.54
SRGAP3-207ENST00000485983 GCKRQ14397 625 aa11.71□□□□□ -0.54
SRGAP3-207ENST00000485983 KCTD2Q14681 263 aa11.71□□□□□ -0.54
SRGAP3-207ENST00000485983 CYP26C1Q6V0L0 522 aa11.71□□□□□ -0.54
SRGAP3-207ENST00000485983 RPS6KC1Q96S38 1066 aa11.71□□□□□ -0.54
SRGAP3-207ENST00000485983 NRBP2Q9NSY0 501 aa11.71□□□□□ -0.54
SRGAP3-207ENST00000485983 MYCP01106 439 aaPredicted RBP11.7□□□□□ -0.54
SRGAP3-207ENST00000485983 MAN1A1P33908 653 aa11.7□□□□□ -0.54
SRGAP3-207ENST00000485983 CTDSPL2Q05D32 466 aa11.7□□□□□ -0.54
SRGAP3-207ENST00000485983 NCAPGQ9BPX3 1015 aa11.7□□□□□ -0.54
SRGAP3-207ENST00000485983 AP5M1Q9H0R1 490 aa11.7□□□□□ -0.54
SRGAP3-207ENST00000485983 KDM3AQ9Y4C1 1321 aa11.7□□□□□ -0.54
SRGAP3-207ENST00000485983 POLR2DO15514 142 aaKnown RBP11.7□□□□□ -0.54
SRGAP3-207ENST00000485983 NELFCDQ8IXH7 590 aa11.7□□□□□ -0.54
SRGAP3-207ENST00000485983 SYCE1Q8N0S2 351 aa11.7□□□□□ -0.54
SRGAP3-207ENST00000485983 MMS19Q96T76 1030 aa11.7□□□□□ -0.54
SRGAP3-207ENST00000485983 RPRD2Q5VT52 1461 aaKnown RBP11.7□□□□□ -0.54
SRGAP3-207ENST00000485983 POLR2BP30876 1174 aaKnown RBP11.7□□□□□ -0.54
SRGAP3-207ENST00000485983 LACTBP83111 547 aaPredicted RBP11.7□□□□□ -0.54
SRGAP3-207ENST00000485983 RAD51AP2Q09MP3 1159 aa11.7□□□□□ -0.54
SRGAP3-207ENST00000485983 DNAJC21Q5F1R6 531 aaKnown RBP11.7□□□□□ -0.54
SRGAP3-207ENST00000485983 ATP2A3Q93084 1043 aa11.7□□□□□ -0.54
SRGAP3-207ENST00000485983 ERVV-2B6SEH9 535 aa11.7□□□□□ -0.54
SRGAP3-207ENST00000485983 GIGYF1O75420 1035 aaPredicted RBP11.7□□□□□ -0.54
SRGAP3-207ENST00000485983 XPAP23025 273 aaPredicted RBP11.7□□□□□ -0.54
SRGAP3-207ENST00000485983 MAPK8IP2Q13387 824 aaPredicted RBP11.7□□□□□ -0.54
SRGAP3-207ENST00000485983 NEDD9Q14511 834 aa11.7□□□□□ -0.54
SRGAP3-207ENST00000485983 KBTBD3Q8NAB2 608 aa11.7□□□□□ -0.54
SRGAP3-207ENST00000485983 ZNF532Q9HCE3 1301 aa11.7□□□□□ -0.54
SRGAP3-207ENST00000485983 XPOTO43592 962 aaKnown RBP11.69□□□□□ -0.54
SRGAP3-207ENST00000485983 XRCC6P12956 609 aaKnown RBP eCLIP11.69□□□□□ -0.54
SRGAP3-207ENST00000485983 FAM160B1Q5W0V3 765 aa11.69□□□□□ -0.54
SRGAP3-207ENST00000485983 C8orf74Q6P047 294 aa11.69□□□□□ -0.54
SRGAP3-207ENST00000485983 SUGCTQ9HAC7 445 aa11.69□□□□□ -0.54
SRGAP3-207ENST00000485983 LRFN2Q9ULH4 789 aa11.69□□□□□ -0.54
SRGAP3-207ENST00000485983 TYW5A2RUC4 315 aaKnown RBP11.69□□□□□ -0.54
SRGAP3-207ENST00000485983 CAPN2P17655 700 aa11.69□□□□□ -0.54
SRGAP3-207ENST00000485983 CERKLQ49MI3 558 aaPredicted RBP11.69□□□□□ -0.54
SRGAP3-207ENST00000485983 KIAA0825Q8IV33 1275 aa11.69□□□□□ -0.54
SRGAP3-207ENST00000485983 MLKLQ8NB16 471 aa11.69□□□□□ -0.54
SRGAP3-207ENST00000485983 FEZ2Q9UHY8 353 aaPredicted RBP11.69□□□□□ -0.54
SRGAP3-207ENST00000485983 POLR3AO14802 1390 aaPredicted RBP11.69□□□□□ -0.54
SRGAP3-207ENST00000485983 SMCO2A6NFE2 343 aa11.69□□□□□ -0.54
SRGAP3-207ENST00000485983 OSBPP22059 807 aa11.69□□□□□ -0.54
SRGAP3-207ENST00000485983 KLHL30Q0D2K2 578 aa11.69□□□□□ -0.54
SRGAP3-207ENST00000485983 XKR9Q5GH70 373 aa11.69□□□□□ -0.54
SRGAP3-207ENST00000485983 CDC37L1Q7L3B6 337 aa11.69□□□□□ -0.54
SRGAP3-207ENST00000485983 CCDC84Q86UT8 332 aaPredicted RBP11.69□□□□□ -0.54
SRGAP3-207ENST00000485983 UIMC1Q96RL1 719 aa11.69□□□□□ -0.54
SRGAP3-207ENST00000485983 NUF2Q9BZD4 464 aa11.69□□□□□ -0.54
SRGAP3-207ENST00000485983 TRPC5Q9UL62 973 aaPredicted RBP11.69□□□□□ -0.54
SRGAP3-207ENST00000485983 SYNRGQ9UMZ2 1314 aa11.69□□□□□ -0.54
SRGAP3-207ENST00000485983 SBNO1A3KN83 1393 aa11.69□□□□□ -0.54
SRGAP3-207ENST00000485983 DUOX2Q9NRD8 1548 aa11.69□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms