RNA–Protein interactions for RNA: ENST00000485550.5

HMGN1-215, Transcript of high mobility group nucleosome binding domain 1, human

TSL 5

Gene HMGN1, Length 745 nt, Biotype processed transcript, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HMGN1-215	ENST00000485550	ZBED9	Q6R2W3	1325 aa		12.91	□□□□□ -0.34
HMGN1-215	ENST00000485550	IDH1	O75874	414 aa	Known RBP	12.91	□□□□□ -0.34
HMGN1-215	ENST00000485550	CYP7A1	P22680	504 aa		12.91	□□□□□ -0.34
HMGN1-215	ENST00000485550	CAP2	P40123	477 aa		12.91	□□□□□ -0.34
HMGN1-215	ENST00000485550	CACNB2	Q08289	660 aa	Predicted RBP	12.91	□□□□□ -0.34
HMGN1-215	ENST00000485550	PABPC4	Q13310	644 aa	Known RBP eCLIP	12.91	□□□□□ -0.34
HMGN1-215	ENST00000485550	ZNF512B	Q96KM6	892 aa	Predicted RBP	12.91	□□□□□ -0.34
HMGN1-215	ENST00000485550	ANTXR1	Q9H6X2	564 aa		12.91	□□□□□ -0.34
HMGN1-215	ENST00000485550	IL1RAPL2	Q9NP60	686 aa		12.91	□□□□□ -0.34
HMGN1-215	ENST00000485550	PRDM6	Q9NQX0	595 aa		12.91	□□□□□ -0.34
HMGN1-215	ENST00000485550	PI4KB	Q9UBF8	816 aa		12.91	□□□□□ -0.34
HMGN1-215	ENST00000485550	SAP30BP	Q9UHR5	308 aa	Known RBP	12.91	□□□□□ -0.34
HMGN1-215	ENST00000485550	PALD1	Q9ULE6	856 aa		12.91	□□□□□ -0.34
HMGN1-215	ENST00000485550	MYO5A	Q9Y4I1	1855 aa	Known RBP	12.91	□□□□□ -0.34
HMGN1-215	ENST00000485550	SPTBN5	Q9NRC6	3674 aa	Known RBP	12.91	□□□□□ -0.34
HMGN1-215	ENST00000485550	APBB1	O00213	710 aa		12.9	□□□□□ -0.34
HMGN1-215	ENST00000485550	ZKSCAN1	P17029	563 aa	Predicted RBP	12.9	□□□□□ -0.34
HMGN1-215	ENST00000485550	PPP4C	P60510	307 aa		12.9	□□□□□ -0.34
HMGN1-215	ENST00000485550	IRX3	P78415	501 aa	Predicted RBP	12.9	□□□□□ -0.34
HMGN1-215	ENST00000485550	JAG1	P78504	1218 aa		12.9	□□□□□ -0.34
HMGN1-215	ENST00000485550	CCL14	Q16627	93 aa		12.9	□□□□□ -0.34
HMGN1-215	ENST00000485550	AACS	Q86V21	672 aa		12.9	□□□□□ -0.34
HMGN1-215	ENST00000485550	MIGA1	Q8NAN2	632 aa		12.9	□□□□□ -0.34
HMGN1-215	ENST00000485550	MAFA	Q8NHW3	353 aa	Predicted RBP	12.9	□□□□□ -0.34
HMGN1-215	ENST00000485550	CDX2	Q99626	313 aa	Predicted RBP	12.9	□□□□□ -0.34
HMGN1-215	ENST00000485550	LBHD1	Q9BQE6	289 aa	Predicted RBP	12.9	□□□□□ -0.34
HMGN1-215	ENST00000485550	MORF4L1	Q9UBU8	362 aa		12.9	□□□□□ -0.34
HMGN1-215	ENST00000485550	FLT1	P17948	1338 aa		12.89	□□□□□ -0.35
HMGN1-215	ENST00000485550	USP17L5	A8MUK1	530 aa		12.89	□□□□□ -0.35
HMGN1-215	ENST00000485550	PLCG2	P16885	1265 aa		12.89	□□□□□ -0.35
HMGN1-215	ENST00000485550	SHROOM1	Q2M3G4	852 aa	Predicted RBP	12.89	□□□□□ -0.35
HMGN1-215	ENST00000485550	CRACR2B	Q8N4Y2	399 aa	Predicted RBP	12.89	□□□□□ -0.35
HMGN1-215	ENST00000485550	P2RX7	Q99572	595 aa	Known RBP	12.89	□□□□□ -0.35
HMGN1-215	ENST00000485550	TRIM34	Q9BYJ4	488 aa		12.89	□□□□□ -0.35
HMGN1-215	ENST00000485550	SENP6	Q9GZR1	1112 aa	Predicted RBP	12.89	□□□□□ -0.35
HMGN1-215	ENST00000485550	DHX36	Q9H2U1	1008 aa	Known RBP	12.89	□□□□□ -0.35
HMGN1-215	ENST00000485550	DNAJC18	Q9H819	358 aa		12.89	□□□□□ -0.35
HMGN1-215	ENST00000485550	TXNRD2	Q9NNW7	524 aa		12.89	□□□□□ -0.35
HMGN1-215	ENST00000485550	HERC5	Q9UII4	1024 aa	Known RBP	12.89	□□□□□ -0.35
HMGN1-215	ENST00000485550	COG6	Q9Y2V7	657 aa		12.89	□□□□□ -0.35
HMGN1-215	ENST00000485550	FOCAD	Q5VW36	1801 aa		12.89	□□□□□ -0.35
HMGN1-215	ENST00000485550	SMCHD1	A6NHR9	2005 aa		12.88	□□□□□ -0.35
HMGN1-215	ENST00000485550	GDF11	O95390	407 aa		12.88	□□□□□ -0.35
HMGN1-215	ENST00000485550	XRCC5	P13010	732 aa	Known RBP	12.88	□□□□□ -0.35
HMGN1-215	ENST00000485550	ATN1	P54259	1190 aa	Predicted RBP	12.88	□□□□□ -0.35
HMGN1-215	ENST00000485550	PDE3A	Q14432	1141 aa		12.88	□□□□□ -0.35
HMGN1-215	ENST00000485550	SH3D19	Q5HYK7	790 aa		12.88	□□□□□ -0.35
HMGN1-215	ENST00000485550	FOXP4	Q8IVH2	680 aa	Predicted RBP	12.88	□□□□□ -0.35
HMGN1-215	ENST00000485550	MAGEB6	Q8N7X4	407 aa		12.88	□□□□□ -0.35
HMGN1-215	ENST00000485550	SOCS4	Q8WXH5	440 aa		12.88	□□□□□ -0.35
HMGN1-215	ENST00000485550	USP5	P45974	858 aa		12.87	□□□□□ -0.35
HMGN1-215	ENST00000485550	MTMR2	Q13614	643 aa		12.87	□□□□□ -0.35
HMGN1-215	ENST00000485550		Q3C1V9	767 aa		12.87	□□□□□ -0.35
HMGN1-215	ENST00000485550	ERC1	Q8IUD2	1116 aa		12.87	□□□□□ -0.35
HMGN1-215	ENST00000485550	GPRC5A	Q8NFJ5	357 aa		12.87	□□□□□ -0.35
HMGN1-215	ENST00000485550	RHPN1	Q8TCX5	695 aa		12.87	□□□□□ -0.35
HMGN1-215	ENST00000485550	MYLIP	Q8WY64	445 aa		12.87	□□□□□ -0.35
HMGN1-215	ENST00000485550	PAGR1	Q9BTK6	254 aa		12.87	□□□□□ -0.35
HMGN1-215	ENST00000485550	PORCN	Q9H237	461 aa		12.87	□□□□□ -0.35
HMGN1-215	ENST00000485550	SEMA6B	Q9H3T3	888 aa		12.87	□□□□□ -0.35
HMGN1-215	ENST00000485550	AS3MT	Q9HBK9	375 aa		12.87	□□□□□ -0.35
HMGN1-215	ENST00000485550	MYH1	P12882	1939 aa		12.87	□□□□□ -0.35
HMGN1-215	ENST00000485550	ZNFX1	Q9P2E3	1918 aa	Known RBP	12.87	□□□□□ -0.35
HMGN1-215	ENST00000485550	CDH23	Q9H251	3354 aa		12.87	□□□□□ -0.35
HMGN1-215	ENST00000485550	HLA-DOA	P06340	250 aa		12.86	□□□□□ -0.35
HMGN1-215	ENST00000485550	MS4A1	P11836	297 aa		12.86	□□□□□ -0.35
HMGN1-215	ENST00000485550	RGS2	P41220	211 aa		12.86	□□□□□ -0.35
HMGN1-215	ENST00000485550	HERVK_113	P62684	666 aa		12.86	□□□□□ -0.35
HMGN1-215	ENST00000485550	MAP3K12	Q12852	859 aa		12.86	□□□□□ -0.35
HMGN1-215	ENST00000485550	SHH	Q15465	462 aa		12.86	□□□□□ -0.35
HMGN1-215	ENST00000485550	GPR142	Q7Z601	462 aa		12.86	□□□□□ -0.35
HMGN1-215	ENST00000485550	CCAR1	Q8IX12	1150 aa	Known RBP	12.86	□□□□□ -0.35
HMGN1-215	ENST00000485550	TRMT44	Q8IYL2	757 aa	Known RBP	12.86	□□□□□ -0.35
HMGN1-215	ENST00000485550	USP6NL	Q92738	828 aa		12.86	□□□□□ -0.35
HMGN1-215	ENST00000485550	TBC1D2	Q9BYX2	928 aa		12.86	□□□□□ -0.35
HMGN1-215	ENST00000485550	TMOD4	Q9NZQ9	345 aa		12.86	□□□□□ -0.35
HMGN1-215	ENST00000485550	ASNS	P08243	561 aa		12.85	□□□□□ -0.35
HMGN1-215	ENST00000485550	MAPK4	P31152	587 aa		12.85	□□□□□ -0.35
HMGN1-215	ENST00000485550	BACE1	P56817	501 aa		12.85	□□□□□ -0.35
HMGN1-215	ENST00000485550	ERVK-9	P63128	1117 aa		12.85	□□□□□ -0.35
HMGN1-215	ENST00000485550	ERVK-24	P63145	666 aa		12.85	□□□□□ -0.35
HMGN1-215	ENST00000485550	HSP90AB4P	Q58FF6	505 aa		12.85	□□□□□ -0.35
HMGN1-215	ENST00000485550	C9orf50	Q5SZB4	431 aa		12.85	□□□□□ -0.35
HMGN1-215	ENST00000485550	MORN1	Q5T089	497 aa		12.85	□□□□□ -0.35
HMGN1-215	ENST00000485550	METTL16	Q86W50	562 aa	Known RBP	12.85	□□□□□ -0.35
HMGN1-215	ENST00000485550	SIRT2	Q8IXJ6	389 aa		12.85	□□□□□ -0.35
HMGN1-215	ENST00000485550	DNAJC2	Q99543	621 aa	Known RBP	12.85	□□□□□ -0.35
HMGN1-215	ENST00000485550	APBA2	Q99767	749 aa		12.85	□□□□□ -0.35
HMGN1-215	ENST00000485550	RBPJL	Q9UBG7	517 aa		12.85	□□□□□ -0.35
HMGN1-215	ENST00000485550	PRKAG2	Q9UGJ0	569 aa		12.85	□□□□□ -0.35
HMGN1-215	ENST00000485550	NCOR1	O75376	2440 aa		12.85	□□□□□ -0.35
HMGN1-215	ENST00000485550	CNGA1	P29973	690 aa		12.84	□□□□□ -0.35
HMGN1-215	ENST00000485550	HOXA7	P31268	230 aa	Predicted RBP	12.84	□□□□□ -0.35
HMGN1-215	ENST00000485550	RTP1	P59025	263 aa		12.84	□□□□□ -0.35
HMGN1-215	ENST00000485550	PLEKHH3	Q7Z736	793 aa		12.84	□□□□□ -0.35
HMGN1-215	ENST00000485550	RPAP2	Q8IXW5	612 aa	Predicted RBP	12.84	□□□□□ -0.35
HMGN1-215	ENST00000485550	CLASRP	Q8N2M8	674 aa	Known RBP	12.84	□□□□□ -0.35
HMGN1-215	ENST00000485550	WDR18	Q9BV38	432 aa		12.84	□□□□□ -0.35
HMGN1-215	ENST00000485550	TTYH1	Q9H313	450 aa	Predicted RBP	12.84	□□□□□ -0.35
HMGN1-215	ENST00000485550	CWC22	Q9HCG8	908 aa	Known RBP	12.84	□□□□□ -0.35

Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms