RNA–Protein interactions for RNA: ENST00000485412.1

SQSTM1-208, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 656 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-208ENST00000485412 FOXP4Q8IVH2 680 aaPredicted RBP16.91■□□□□ 0.3
SQSTM1-208ENST00000485412 FTSJ3Q8IY81 847 aaKnown RBP16.91■□□□□ 0.3
SQSTM1-208ENST00000485412 MAGEB6Q8N7X4 407 aa16.91■□□□□ 0.3
SQSTM1-208ENST00000485412 GTF3C2Q8WUA4 911 aaPredicted RBP16.91■□□□□ 0.3
SQSTM1-208ENST00000485412 EXOC6BQ9Y2D4 811 aa16.91■□□□□ 0.3
SQSTM1-208ENST00000485412 COL6A1P12109 1028 aa16.9■□□□□ 0.3
SQSTM1-208ENST00000485412 ZYXQ15942 572 aaKnown RBP16.9■□□□□ 0.3
SQSTM1-208ENST00000485412 CCL14Q16627 93 aa16.9■□□□□ 0.3
SQSTM1-208ENST00000485412 LRRC26Q2I0M4 334 aa16.9■□□□□ 0.3
SQSTM1-208ENST00000485412 GPR142Q7Z601 462 aa16.9■□□□□ 0.3
SQSTM1-208ENST00000485412 PLEKHH3Q7Z736 793 aa16.9■□□□□ 0.3
SQSTM1-208ENST00000485412 PANK1Q8TE04 598 aa16.9■□□□□ 0.3
SQSTM1-208ENST00000485412 APBA2Q99767 749 aa16.9■□□□□ 0.3
SQSTM1-208ENST00000485412 GINM1Q9NU53 330 aa16.9■□□□□ 0.3
SQSTM1-208ENST00000485412 USP6NLQ92738 828 aa16.89■□□□□ 0.29
SQSTM1-208ENST00000485412 MYH8P13535 1937 aa16.89■□□□□ 0.29
SQSTM1-208ENST00000485412 RLFQ13129 1914 aa16.88■□□□□ 0.29
SQSTM1-208ENST00000485412 BAZ2AQ9UIF9 1905 aaKnown RBP16.88■□□□□ 0.29
SQSTM1-208ENST00000485412 CNMDO75829 334 aa16.88■□□□□ 0.29
SQSTM1-208ENST00000485412 HLA-DOAP06340 250 aa16.88■□□□□ 0.29
SQSTM1-208ENST00000485412 MORN1Q5T089 497 aa16.88■□□□□ 0.29
SQSTM1-208ENST00000485412 LHX8Q68G74 356 aa16.88■□□□□ 0.29
SQSTM1-208ENST00000485412 USP17L2Q6R6M4 530 aa16.88■□□□□ 0.29
SQSTM1-208ENST00000485412 MIER1Q8N108 512 aa16.88■□□□□ 0.29
SQSTM1-208ENST00000485412 ACER1Q8TDN7 264 aa16.88■□□□□ 0.29
SQSTM1-208ENST00000485412 LBHD1Q9BQE6 289 aaPredicted RBP16.88■□□□□ 0.29
SQSTM1-208ENST00000485412 IL1RAPL2Q9NP60 686 aa16.88■□□□□ 0.29
SQSTM1-208ENST00000485412 GLRX3O76003 335 aaKnown RBP16.87■□□□□ 0.29
SQSTM1-208ENST00000485412 PLCD1P51178 756 aa16.87■□□□□ 0.29
SQSTM1-208ENST00000485412 MAP2K5Q13163 448 aa16.87■□□□□ 0.29
SQSTM1-208ENST00000485412 WDR78Q5VTH9 848 aa16.87■□□□□ 0.29
SQSTM1-208ENST00000485412 MFSD14CQ5VZR4 134 aa16.87■□□□□ 0.29
SQSTM1-208ENST00000485412 TATDN1Q6P1N9 297 aa16.87■□□□□ 0.29
SQSTM1-208ENST00000485412 AACSQ86V21 672 aa16.87■□□□□ 0.29
SQSTM1-208ENST00000485412 FEZ1Q99689 392 aa16.87■□□□□ 0.29
SQSTM1-208ENST00000485412 SHMT1P34896 483 aa16.86■□□□□ 0.29
SQSTM1-208ENST00000485412 USP5P45974 858 aa16.86■□□□□ 0.29
SQSTM1-208ENST00000485412 CCNA1P78396 465 aa16.86■□□□□ 0.29
SQSTM1-208ENST00000485412 RIOK1Q9BRS2 568 aaKnown RBP16.86■□□□□ 0.29
SQSTM1-208ENST00000485412 SENP6Q9GZR1 1112 aaPredicted RBP16.86■□□□□ 0.29
SQSTM1-208ENST00000485412 PARP14Q460N5 1801 aa16.86■□□□□ 0.29
SQSTM1-208ENST00000485412 LAMA2P24043 3122 aaKnown RBP16.85■□□□□ 0.29
SQSTM1-208ENST00000485412 A0A0G2JMZ2 1700 aa16.85■□□□□ 0.29
SQSTM1-208ENST00000485412 GUCY1A2P33402 732 aa16.85■□□□□ 0.29
SQSTM1-208ENST00000485412 RAB3GAP1Q15042 981 aa16.85■□□□□ 0.29
SQSTM1-208ENST00000485412 SLFNL1Q499Z3 407 aa16.85■□□□□ 0.29
SQSTM1-208ENST00000485412 EDC3Q96F86 508 aaKnown RBP16.85■□□□□ 0.29
SQSTM1-208ENST00000485412 SERPINB13Q9UIV8 391 aa16.85■□□□□ 0.29
SQSTM1-208ENST00000485412 RABGAP1Q9Y3P9 1069 aa16.85■□□□□ 0.29
SQSTM1-208ENST00000485412 MYH7P12883 1935 aa16.85■□□□□ 0.29
SQSTM1-208ENST00000485412 USP17L15C9J2P7 530 aa16.84■□□□□ 0.29
SQSTM1-208ENST00000485412 USP17L13C9JLJ4 530 aa16.84■□□□□ 0.29
SQSTM1-208ENST00000485412 USP17L11C9JVI0 530 aa16.84■□□□□ 0.29
SQSTM1-208ENST00000485412 USP17L18D6R9N7 530 aa16.84■□□□□ 0.29
SQSTM1-208ENST00000485412 USP17L22D6RA61 530 aa16.84■□□□□ 0.29
SQSTM1-208ENST00000485412 USP17L17D6RBQ6 530 aa16.84■□□□□ 0.29
SQSTM1-208ENST00000485412 USP17L19D6RCP7 530 aa16.84■□□□□ 0.29
SQSTM1-208ENST00000485412 USP17L20D6RJB6 530 aa16.84■□□□□ 0.29
SQSTM1-208ENST00000485412 VCAM1P19320 739 aa16.84■□□□□ 0.29
SQSTM1-208ENST00000485412 CNGA1P29973 690 aa16.84■□□□□ 0.29
SQSTM1-208ENST00000485412 USP17L24Q0WX57 530 aa16.84■□□□□ 0.29
SQSTM1-208ENST00000485412 PHF6Q8IWS0 365 aaKnown RBP eCLIP16.84■□□□□ 0.29
SQSTM1-208ENST00000485412 C12orf42Q96LP6 360 aa16.84■□□□□ 0.29
SQSTM1-208ENST00000485412 COL25A1Q9BXS0 654 aaPredicted RBP16.84■□□□□ 0.29
SQSTM1-208ENST00000485412 EHD4Q9H223 541 aa16.84■□□□□ 0.29
SQSTM1-208ENST00000485412 FLRT1Q9NZU1 646 aa16.84■□□□□ 0.29
SQSTM1-208ENST00000485412 PRKAG2Q9UGJ0 569 aa16.84■□□□□ 0.29
SQSTM1-208ENST00000485412 IVNS1ABPQ9Y6Y0 642 aa16.84■□□□□ 0.29
SQSTM1-208ENST00000485412 SMIM22K7EJ46 135 aa16.83■□□□□ 0.28
SQSTM1-208ENST00000485412 APBB1O00213 710 aa16.83■□□□□ 0.28
SQSTM1-208ENST00000485412 MSCO60682 206 aa16.83■□□□□ 0.28
SQSTM1-208ENST00000485412 CYP2D6P10635 497 aa16.83■□□□□ 0.28
SQSTM1-208ENST00000485412 ATN1P54259 1190 aaPredicted RBP16.83■□□□□ 0.28
SQSTM1-208ENST00000485412 ATP2B2Q01814 1243 aa16.83■□□□□ 0.28
SQSTM1-208ENST00000485412 ABCB5Q2M3G0 1257 aa16.83■□□□□ 0.28
SQSTM1-208ENST00000485412 CERKLQ49MI3 558 aaPredicted RBP16.83■□□□□ 0.28
SQSTM1-208ENST00000485412 FAM109BQ6ICB4 259 aaPredicted RBP16.83■□□□□ 0.28
SQSTM1-208ENST00000485412 FAM161BQ96MY7 647 aa16.83■□□□□ 0.28
SQSTM1-208ENST00000485412 BCL11AQ9H165 835 aa16.83■□□□□ 0.28
SQSTM1-208ENST00000485412 BTBD7Q9P203 1132 aa16.83■□□□□ 0.28
SQSTM1-208ENST00000485412 DDX20Q9UHI6 824 aaKnown RBP16.83■□□□□ 0.28
SQSTM1-208ENST00000485412 UNC80Q8N2C7 3258 aa16.83■□□□□ 0.28
SQSTM1-208ENST00000485412 COL11A1P12107 1806 aaPredicted RBP16.82■□□□□ 0.28
SQSTM1-208ENST00000485412 LTBP2Q14767 1821 aa16.82■□□□□ 0.28
SQSTM1-208ENST00000485412 SLC15A5A6NIM6 579 aa16.82■□□□□ 0.28
SQSTM1-208ENST00000485412 POTEB2H3BUK9 544 aa16.82■□□□□ 0.28
SQSTM1-208ENST00000485412 CHGBP05060 677 aa16.82■□□□□ 0.28
SQSTM1-208ENST00000485412 PDE6AP16499 860 aa16.82■□□□□ 0.28
SQSTM1-208ENST00000485412 USP14P54578 494 aa16.82■□□□□ 0.28
SQSTM1-208ENST00000485412 GABPAQ06546 454 aa16.82■□□□□ 0.28
SQSTM1-208ENST00000485412 MAP3K12Q12852 859 aa16.82■□□□□ 0.28
SQSTM1-208ENST00000485412 SEPT2Q15019 361 aa16.82■□□□□ 0.28
SQSTM1-208ENST00000485412 ZNF697Q5TEC3 545 aa16.82■□□□□ 0.28
SQSTM1-208ENST00000485412 SIRT2Q8IXJ6 389 aa16.82■□□□□ 0.28
SQSTM1-208ENST00000485412 SLC44A5Q8NCS7 719 aa16.82■□□□□ 0.28
SQSTM1-208ENST00000485412 RHPN1Q8TCX5 695 aa16.82■□□□□ 0.28
SQSTM1-208ENST00000485412 SDR42E1Q8WUS8 393 aa16.82■□□□□ 0.28
SQSTM1-208ENST00000485412 GUCD1Q96NT3 240 aa16.82■□□□□ 0.28
SQSTM1-208ENST00000485412 KIAA1683Q9H0B3 1180 aa16.82■□□□□ 0.28
SQSTM1-208ENST00000485412 MAGEB6P1A0A0J9YX57 407 aa16.81■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms