RNA–Protein interactions for RNA: ENST00000485306.1

TRIM54-203, Transcript of tripartite motif containing 54, humanhuman

TSL 2

Gene TRIM54, Length 705 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-203ENST00000485306 EMILIN3Q9NT22 766 aa19.92■□□□□ 0.78
TRIM54-203ENST00000485306 SLC4A4Q9Y6R1 1079 aa19.92■□□□□ 0.78
TRIM54-203ENST00000485306 RBBP6Q7Z6E9 1792 aaKnown RBP19.92■□□□□ 0.78
TRIM54-203ENST00000485306 DDX60LQ5H9U9 1706 aaKnown RBP19.91■□□□□ 0.78
TRIM54-203ENST00000485306 MPHOSPH10O00566 681 aaKnown RBP19.91■□□□□ 0.78
TRIM54-203ENST00000485306 MYCP01106 439 aaPredicted RBP19.91■□□□□ 0.78
TRIM54-203ENST00000485306 ZFYP08048 801 aaPredicted RBP19.91■□□□□ 0.78
TRIM54-203ENST00000485306 UBXN2AP68543 259 aa19.91■□□□□ 0.78
TRIM54-203ENST00000485306 SLAIN1Q8ND83 568 aa19.91■□□□□ 0.78
TRIM54-203ENST00000485306 GTF3C2Q8WUA4 911 aaPredicted RBP19.91■□□□□ 0.78
TRIM54-203ENST00000485306 P2RX7Q99572 595 aaKnown RBP19.91■□□□□ 0.78
TRIM54-203ENST00000485306 GABRQQ9UN88 632 aa19.91■□□□□ 0.78
TRIM54-203ENST00000485306 HTTP42858 3142 aa19.91■□□□□ 0.78
TRIM54-203ENST00000485306 PDE4DIPQ5VU43 2346 aa19.9■□□□□ 0.78
TRIM54-203ENST00000485306 ADCY3O60266 1144 aa19.9■□□□□ 0.78
TRIM54-203ENST00000485306 EN2P19622 333 aaPredicted RBP19.9■□□□□ 0.78
TRIM54-203ENST00000485306 FLT3LGP49771 235 aa19.9■□□□□ 0.78
TRIM54-203ENST00000485306 ZYXQ15942 572 aaKnown RBP19.9■□□□□ 0.78
TRIM54-203ENST00000485306 KIAA1683Q9H0B3 1180 aa19.9■□□□□ 0.78
TRIM54-203ENST00000485306 PUS7LQ9H0K6 701 aaKnown RBP19.9■□□□□ 0.78
TRIM54-203ENST00000485306 MORF4L1Q9UBU8 362 aa19.9■□□□□ 0.78
TRIM54-203ENST00000485306 USP17L15C9J2P7 530 aa19.89■□□□□ 0.77
TRIM54-203ENST00000485306 USP17L13C9JLJ4 530 aa19.89■□□□□ 0.77
TRIM54-203ENST00000485306 USP17L12C9JPN9 530 aa19.89■□□□□ 0.77
TRIM54-203ENST00000485306 USP17L11C9JVI0 530 aa19.89■□□□□ 0.77
TRIM54-203ENST00000485306 USP17L21D6R901 530 aa19.89■□□□□ 0.77
TRIM54-203ENST00000485306 USP17L18D6R9N7 530 aa19.89■□□□□ 0.77
TRIM54-203ENST00000485306 USP17L22D6RA61 530 aa19.89■□□□□ 0.77
TRIM54-203ENST00000485306 USP17L17D6RBQ6 530 aa19.89■□□□□ 0.77
TRIM54-203ENST00000485306 USP17L19D6RCP7 530 aa19.89■□□□□ 0.77
TRIM54-203ENST00000485306 USP17L20D6RJB6 530 aa19.89■□□□□ 0.77
TRIM54-203ENST00000485306 RNF113AO15541 343 aaKnown RBP19.89■□□□□ 0.77
TRIM54-203ENST00000485306 CYP2D6P10635 497 aa19.89■□□□□ 0.77
TRIM54-203ENST00000485306 HERVK_113P62684 666 aa19.89■□□□□ 0.77
TRIM54-203ENST00000485306 USP17L24Q0WX57 530 aa19.89■□□□□ 0.77
TRIM54-203ENST00000485306 IRF5Q13568 498 aa19.89■□□□□ 0.77
TRIM54-203ENST00000485306 C12orf60Q5U649 245 aa19.89■□□□□ 0.77
TRIM54-203ENST00000485306 GPRC5AQ8NFJ5 357 aa19.89■□□□□ 0.77
TRIM54-203ENST00000485306 C12orf42Q96LP6 360 aa19.89■□□□□ 0.77
TRIM54-203ENST00000485306 OSBPL3Q9H4L5 887 aa19.89■□□□□ 0.77
TRIM54-203ENST00000485306 STAP2Q9UGK3 403 aa19.89■□□□□ 0.77
TRIM54-203ENST00000485306 BAZ2AQ9UIF9 1905 aaKnown RBP19.88■□□□□ 0.77
TRIM54-203ENST00000485306 SEPT2Q15019 361 aa19.88■□□□□ 0.77
TRIM54-203ENST00000485306 TMEM179Q6ZVK1 233 aa19.88■□□□□ 0.77
TRIM54-203ENST00000485306 PXYLP1Q8TE99 480 aa19.88■□□□□ 0.77
TRIM54-203ENST00000485306 APPBP2Q92624 585 aa19.88■□□□□ 0.77
TRIM54-203ENST00000485306 CCDC17Q96LX7 622 aa19.88■□□□□ 0.77
TRIM54-203ENST00000485306 TNRC18O15417 2968 aaPredicted RBP19.88■□□□□ 0.77
TRIM54-203ENST00000485306 MYH8P13535 1937 aa19.88■□□□□ 0.77
TRIM54-203ENST00000485306 CENPFP49454 3210 aa19.87■□□□□ 0.77
TRIM54-203ENST00000485306 PDE4AP27815 886 aa19.87■□□□□ 0.77
TRIM54-203ENST00000485306 PDE1AP54750 535 aa19.87■□□□□ 0.77
TRIM54-203ENST00000485306 PLEKHM2Q8IWE5 1019 aa19.87■□□□□ 0.77
TRIM54-203ENST00000485306 CCAR1Q8IX12 1150 aaKnown RBP19.87■□□□□ 0.77
TRIM54-203ENST00000485306 NKX2-3Q8TAU0 364 aa19.87■□□□□ 0.77
TRIM54-203ENST00000485306 ACER1Q8TDN7 264 aa19.87■□□□□ 0.77
TRIM54-203ENST00000485306 DYNLL2Q96FJ2 89 aa19.87■□□□□ 0.77
TRIM54-203ENST00000485306 STRBPQ96SI9 672 aaKnown RBP19.87■□□□□ 0.77
TRIM54-203ENST00000485306 DOCK3Q8IZD9 2030 aa19.86■□□□□ 0.77
TRIM54-203ENST00000485306 GNAT2P19087 354 aa19.86■□□□□ 0.77
TRIM54-203ENST00000485306 GUCY1A2P33402 732 aa19.86■□□□□ 0.77
TRIM54-203ENST00000485306 CDK8P49336 464 aa19.86■□□□□ 0.77
TRIM54-203ENST00000485306 EVX2Q03828 476 aa19.86■□□□□ 0.77
TRIM54-203ENST00000485306 MTFR1Q15390 333 aa19.86■□□□□ 0.77
TRIM54-203ENST00000485306 GIMAP6Q6P9H5 292 aa19.86■□□□□ 0.77
TRIM54-203ENST00000485306 CATSPERGQ6ZRH7 1159 aa19.86■□□□□ 0.77
TRIM54-203ENST00000485306 SLC44A5Q8NCS7 719 aa19.86■□□□□ 0.77
TRIM54-203ENST00000485306 RBPJLQ9UBG7 517 aa19.86■□□□□ 0.77
TRIM54-203ENST00000485306 ARPP21Q9UBL0 812 aaPredicted RBP19.86■□□□□ 0.77
TRIM54-203ENST00000485306 CCL5P13501 91 aa19.85■□□□□ 0.77
TRIM54-203ENST00000485306 CTR9Q6PD62 1173 aa19.85■□□□□ 0.77
TRIM54-203ENST00000485306 OSBP2Q969R2 916 aa19.85■□□□□ 0.77
TRIM54-203ENST00000485306 FSD1Q9BTV5 496 aa19.85■□□□□ 0.77
TRIM54-203ENST00000485306 RNF208Q9H0X6 261 aa19.85■□□□□ 0.77
TRIM54-203ENST00000485306 ARHGEF10LQ9HCE6 1279 aa19.85■□□□□ 0.77
TRIM54-203ENST00000485306 CYP2D7A0A087X1C5 515 aa19.84■□□□□ 0.77
TRIM54-203ENST00000485306 VCAM1P19320 739 aa19.84■□□□□ 0.77
TRIM54-203ENST00000485306 MAPK4P31152 587 aa19.84■□□□□ 0.77
TRIM54-203ENST00000485306 ERVK-9P63128 1117 aa19.84■□□□□ 0.77
TRIM54-203ENST00000485306 ERVK-24P63145 666 aa19.84■□□□□ 0.77
TRIM54-203ENST00000485306 C16orf86Q6ZW13 317 aa19.84■□□□□ 0.77
TRIM54-203ENST00000485306 PAGR1Q9BTK6 254 aa19.84■□□□□ 0.77
TRIM54-203ENST00000485306 SH2D4AQ9H788 454 aa19.84■□□□□ 0.77
TRIM54-203ENST00000485306 TXNRD2Q9NNW7 524 aa19.84■□□□□ 0.77
TRIM54-203ENST00000485306 APPP05067 770 aa19.83■□□□□ 0.77
TRIM54-203ENST00000485306 GJB1P08034 283 aa19.83■□□□□ 0.77
TRIM54-203ENST00000485306 ELNP15502 786 aa19.83■□□□□ 0.77
TRIM54-203ENST00000485306 CCNA1P78396 465 aa19.83■□□□□ 0.77
TRIM54-203ENST00000485306 SBK1Q52WX2 424 aa19.83■□□□□ 0.77
TRIM54-203ENST00000485306 PRPF38BQ5VTL8 546 aaKnown RBP19.83■□□□□ 0.77
TRIM54-203ENST00000485306 CWC22Q9HCG8 908 aaKnown RBP19.83■□□□□ 0.77
TRIM54-203ENST00000485306 GJD2Q9UKL4 321 aa19.83■□□□□ 0.77
TRIM54-203ENST00000485306 RABGAP1Q9Y3P9 1069 aa19.83■□□□□ 0.77
TRIM54-203ENST00000485306 GSG1L2A8MUP6 293 aa19.82■□□□□ 0.76
TRIM54-203ENST00000485306 M0R2C6 588 aa19.82■□□□□ 0.76
TRIM54-203ENST00000485306 GPAA1O43292 621 aa19.82■□□□□ 0.76
TRIM54-203ENST00000485306 AKR1B1P15121 316 aa19.82■□□□□ 0.76
TRIM54-203ENST00000485306 CAPN2P17655 700 aa19.82■□□□□ 0.76
TRIM54-203ENST00000485306 Q3C1V9 767 aa19.82■□□□□ 0.76
TRIM54-203ENST00000485306 NUDT12Q9BQG2 462 aa19.82■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms