RNA–Protein interactions for RNA: ENST00000485055.5

CCDC39-205, Transcript of coiled-coil domain containing 39, humanhuman

TSL 1 (best)

Gene CCDC39, Length 2,874 nt, Biotype processed transcript.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-205ENST00000485055 MSL3Q8N5Y2 521 aaKnown RBP6.35□□□□□ -1.39
CCDC39-205ENST00000485055 KAZALD1Q96I82 304 aa6.35□□□□□ -1.39
CCDC39-205ENST00000485055 SRPK1Q96SB4 655 aaKnown RBP6.35□□□□□ -1.39
CCDC39-205ENST00000485055 HOMER2Q9NSB8 354 aa6.35□□□□□ -1.39
CCDC39-205ENST00000485055 VTI1BQ9UEU0 232 aa6.35□□□□□ -1.39
CCDC39-205ENST00000485055 SEPT3Q9UH03 358 aa6.35□□□□□ -1.39
CCDC39-205ENST00000485055 ZNF804BA4D1E1 1349 aa6.35□□□□□ -1.39
CCDC39-205ENST00000485055 WDR33Q9C0J8 1336 aaKnown RBP6.35□□□□□ -1.39
CCDC39-205ENST00000485055 FGFR2P21802 821 aa6.35□□□□□ -1.39
CCDC39-205ENST00000485055 MAN1A1P33908 653 aa6.35□□□□□ -1.39
CCDC39-205ENST00000485055 CTCFP49711 727 aaPredicted RBP6.35□□□□□ -1.39
CCDC39-205ENST00000485055 INTS3Q68E01 1043 aaKnown RBP6.35□□□□□ -1.39
CCDC39-205ENST00000485055 RGL4Q8IZJ4 473 aa6.35□□□□□ -1.39
CCDC39-205ENST00000485055 TDRD7Q8NHU6 1098 aaKnown RBP6.35□□□□□ -1.39
CCDC39-205ENST00000485055 RSPH1Q8WYR4 309 aa6.35□□□□□ -1.39
CCDC39-205ENST00000485055 BUD13Q9BRD0 619 aaKnown RBP eCLIP6.35□□□□□ -1.39
CCDC39-205ENST00000485055 ZC3H12CQ9C0D7 883 aaKnown RBP6.35□□□□□ -1.39
CCDC39-205ENST00000485055 GREM2Q9H772 168 aa6.35□□□□□ -1.39
CCDC39-205ENST00000485055 GEMIN8Q9NWZ8 242 aaKnown RBP6.35□□□□□ -1.39
CCDC39-205ENST00000485055 HDAC9Q9UKV0 1011 aa6.35□□□□□ -1.39
CCDC39-205ENST00000485055 PHIPQ8WWQ0 1821 aa6.35□□□□□ -1.39
CCDC39-205ENST00000485055 ANKRD18BA2A2Z9 1011 aa6.34□□□□□ -1.39
CCDC39-205ENST00000485055 PPP1R12AO14974 1030 aaPredicted RBP6.34□□□□□ -1.39
CCDC39-205ENST00000485055 PLIN1O60240 522 aa6.34□□□□□ -1.39
CCDC39-205ENST00000485055 HSP90AA1P07900 732 aaKnown RBP6.34□□□□□ -1.39
CCDC39-205ENST00000485055 POTEIP0CG38 1075 aa6.34□□□□□ -1.39
CCDC39-205ENST00000485055 POTEJP0CG39 1038 aa6.34□□□□□ -1.39
CCDC39-205ENST00000485055 CAPN2P17655 700 aa6.34□□□□□ -1.39
CCDC39-205ENST00000485055 SERINC3Q13530 473 aa6.34□□□□□ -1.39
CCDC39-205ENST00000485055 DEFB115Q30KQ5 88 aa6.34□□□□□ -1.39
CCDC39-205ENST00000485055 BRDTQ58F21 947 aaPredicted RBP6.34□□□□□ -1.39
CCDC39-205ENST00000485055 CHPFQ8IZ52 775 aa6.34□□□□□ -1.39
CCDC39-205ENST00000485055 FRMD6Q96NE9 622 aa6.34□□□□□ -1.39
CCDC39-205ENST00000485055 SEC31BQ9NQW1 1179 aa6.34□□□□□ -1.39
CCDC39-205ENST00000485055 SLC45A1Q9Y2W3 748 aa6.34□□□□□ -1.39
CCDC39-205ENST00000485055 CDK5RAP2Q96SN8 1893 aa6.34□□□□□ -1.39
CCDC39-205ENST00000485055 FAM221BA6H8Z2 402 aa6.34□□□□□ -1.39
CCDC39-205ENST00000485055 FAM196BA6NMK8 535 aa6.34□□□□□ -1.39
CCDC39-205ENST00000485055 TSPAN6O43657 245 aa6.34□□□□□ -1.39
CCDC39-205ENST00000485055 RNASEH2AO75792 299 aaKnown RBP6.34□□□□□ -1.39
CCDC39-205ENST00000485055 RGS20O76081 388 aa6.34□□□□□ -1.39
CCDC39-205ENST00000485055 KRT18P05783 430 aaKnown RBP6.34□□□□□ -1.39
CCDC39-205ENST00000485055 ITGA6P23229 1130 aa6.34□□□□□ -1.39
CCDC39-205ENST00000485055 IGHMBP2P38935 993 aaKnown RBP6.34□□□□□ -1.39
CCDC39-205ENST00000485055 RFX5P48382 616 aaPredicted RBP6.34□□□□□ -1.39
CCDC39-205ENST00000485055 VEGFBP49765 207 aa6.34□□□□□ -1.39
CCDC39-205ENST00000485055 TMC7Q7Z402 723 aa6.34□□□□□ -1.39
CCDC39-205ENST00000485055 OTUD6BQ8N6M0 293 aa6.34□□□□□ -1.39
CCDC39-205ENST00000485055 ANKRD44Q8N8A2 993 aa6.34□□□□□ -1.39
CCDC39-205ENST00000485055 CENPOQ9BU64 300 aa6.34□□□□□ -1.39
CCDC39-205ENST00000485055 ZCCHC17Q9NP64 241 aaKnown RBP6.34□□□□□ -1.39
CCDC39-205ENST00000485055 SLC26A4O43511 780 aa6.33□□□□□ -1.4
CCDC39-205ENST00000485055 SORBS3O60504 671 aa6.33□□□□□ -1.4
CCDC39-205ENST00000485055 SLC10A3P09131 477 aa6.33□□□□□ -1.4
CCDC39-205ENST00000485055 HDAC1Q13547 482 aaPredicted RBP6.33□□□□□ -1.4
CCDC39-205ENST00000485055 RAPGEF1Q13905 1077 aa6.33□□□□□ -1.4
CCDC39-205ENST00000485055 SLC4A8Q2Y0W8 1093 aa6.33□□□□□ -1.4
CCDC39-205ENST00000485055 INO80DQ53TQ3 878 aaPredicted RBP6.33□□□□□ -1.4
CCDC39-205ENST00000485055 APOBEC3FQ8IUX4 373 aaKnown RBP6.33□□□□□ -1.4
CCDC39-205ENST00000485055 MICALL2Q8IY33 904 aa6.33□□□□□ -1.4
CCDC39-205ENST00000485055 FAM200AQ8TCP9 573 aa6.33□□□□□ -1.4
CCDC39-205ENST00000485055 SRCIN1Q9C0H9 1055 aa6.33□□□□□ -1.4
CCDC39-205ENST00000485055 UFL1O94874 794 aa6.33□□□□□ -1.4
CCDC39-205ENST00000485055 HSPA8P11142 646 aaKnown RBP6.33□□□□□ -1.4
CCDC39-205ENST00000485055 MAPK8P45983 427 aa6.33□□□□□ -1.4
CCDC39-205ENST00000485055 TM4SF4P48230 202 aa6.33□□□□□ -1.4
CCDC39-205ENST00000485055 SEC13P55735 322 aa6.33□□□□□ -1.4
CCDC39-205ENST00000485055 CNGB1Q14028 1251 aaPredicted RBP6.33□□□□□ -1.4
CCDC39-205ENST00000485055 ZRSR2Q15696 482 aaKnown RBP6.33□□□□□ -1.4
CCDC39-205ENST00000485055 PPM1EQ8WY54 764 aa6.33□□□□□ -1.4
CCDC39-205ENST00000485055 PRIMPOLQ96LW4 560 aa6.33□□□□□ -1.4
CCDC39-205ENST00000485055 ALDH8A1Q9H2A2 487 aaPredicted RBP6.33□□□□□ -1.4
CCDC39-205ENST00000485055 MRPS23Q9Y3D9 190 aaKnown RBP6.33□□□□□ -1.4
CCDC39-205ENST00000485055 GJA3Q9Y6H8 435 aa6.33□□□□□ -1.4
CCDC39-205ENST00000485055 DNMT3AQ9Y6K1 912 aaPredicted RBP6.33□□□□□ -1.4
CCDC39-205ENST00000485055 LOC285556D6RIA3 1793 aa6.33□□□□□ -1.4
CCDC39-205ENST00000485055 DDX60LQ5H9U9 1706 aaKnown RBP6.33□□□□□ -1.4
CCDC39-205ENST00000485055 SSC5DA1L4H1 1573 aa6.33□□□□□ -1.4
CCDC39-205ENST00000485055 CDC45O75419 566 aa6.32□□□□□ -1.4
CCDC39-205ENST00000485055 IGHDP01880 384 aa6.32□□□□□ -1.4
CCDC39-205ENST00000485055 CHRNDQ07001 517 aa6.32□□□□□ -1.4
CCDC39-205ENST00000485055 NOGQ13253 232 aa6.32□□□□□ -1.4
CCDC39-205ENST00000485055 NFE2Q16621 373 aaPredicted RBP6.32□□□□□ -1.4
CCDC39-205ENST00000485055 NBPF20Q3BBV1 942 aa6.32□□□□□ -1.4
CCDC39-205ENST00000485055 PDZRN4Q6ZMN7 1036 aaPredicted RBP6.32□□□□□ -1.4
CCDC39-205ENST00000485055 SAMD3Q8N6K7 520 aa6.32□□□□□ -1.4
CCDC39-205ENST00000485055 MYRIPQ8NFW9 859 aa6.32□□□□□ -1.4
CCDC39-205ENST00000485055 TRPM4Q8TD43 1214 aa6.32□□□□□ -1.4
CCDC39-205ENST00000485055 CEP89Q96ST8 783 aa6.32□□□□□ -1.4
CCDC39-205ENST00000485055 METTL5Q9NRN9 209 aaKnown RBP6.32□□□□□ -1.4
CCDC39-205ENST00000485055 TYW1Q9NV66 732 aaKnown RBP6.32□□□□□ -1.4
CCDC39-205ENST00000485055 RFX7Q2KHR2 1363 aa6.32□□□□□ -1.4
CCDC39-205ENST00000485055 SPTLC1O15269 473 aa6.32□□□□□ -1.4
CCDC39-205ENST00000485055 SASH1O94885 1247 aa6.32□□□□□ -1.4
CCDC39-205ENST00000485055 SCGB1D2O95969 90 aa6.32□□□□□ -1.4
CCDC39-205ENST00000485055 HSPA1AP0DMV8 641 aaKnown RBP6.32□□□□□ -1.4
CCDC39-205ENST00000485055 HSPA1BP0DMV9 641 aaKnown RBP6.32□□□□□ -1.4
CCDC39-205ENST00000485055 RASA1P20936 1047 aa6.32□□□□□ -1.4
CCDC39-205ENST00000485055 MAP3K10Q02779 954 aa6.32□□□□□ -1.4
CCDC39-205ENST00000485055 CWF19L2Q2TBE0 894 aaKnown RBP6.32□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms