RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 PCMTD2Q9NV79 361 aa9.75□□□□□ -0.85
USP40-213ENST00000483216 EFR3BQ9Y2G0 817 aa9.75□□□□□ -0.85
USP40-213ENST00000483216 RGS13O14921 159 aa9.74□□□□□ -0.85
USP40-213ENST00000483216 CEACAM5P06731 702 aa9.74□□□□□ -0.85
USP40-213ENST00000483216 TNNI2P48788 182 aa9.74□□□□□ -0.85
USP40-213ENST00000483216 ARSHQ5FYA8 562 aa9.74□□□□□ -0.85
USP40-213ENST00000483216 PHACTR4Q8IZ21 702 aa9.74□□□□□ -0.85
USP40-213ENST00000483216 ATG4CQ96DT6 458 aa9.74□□□□□ -0.85
USP40-213ENST00000483216 FERD3LQ96RJ6 166 aa9.74□□□□□ -0.85
USP40-213ENST00000483216 BSDC1Q9NW68 430 aaPredicted RBP9.74□□□□□ -0.85
USP40-213ENST00000483216 CNTNAP4Q9C0A0 1308 aa9.74□□□□□ -0.85
USP40-213ENST00000483216 PRNPP04156 253 aa9.73□□□□□ -0.85
USP40-213ENST00000483216 ZNF865P0CJ78 1059 aaPredicted RBP9.73□□□□□ -0.85
USP40-213ENST00000483216 PLD6Q8N2A8 252 aaKnown RBP9.73□□□□□ -0.85
USP40-213ENST00000483216 RBBP8NLQ8NC74 664 aaPredicted RBP9.73□□□□□ -0.85
USP40-213ENST00000483216 SEC16BQ96JE7 1060 aa9.73□□□□□ -0.85
USP40-213ENST00000483216 ZFP64Q9NPA5 681 aa9.73□□□□□ -0.85
USP40-213ENST00000483216 GNAT3A8MTJ3 354 aa9.72□□□□□ -0.85
USP40-213ENST00000483216 RAG1P15918 1043 aa9.72□□□□□ -0.85
USP40-213ENST00000483216 KIR3DL1P43629 444 aa9.72□□□□□ -0.85
USP40-213ENST00000483216 IFI16Q16666 785 aaKnown RBP9.72□□□□□ -0.85
USP40-213ENST00000483216 NLRC3Q7RTR2 1065 aa9.72□□□□□ -0.85
USP40-213ENST00000483216 BAHD1Q8TBE0 780 aaPredicted RBP9.72□□□□□ -0.85
USP40-213ENST00000483216 KIF2CQ99661 725 aa9.72□□□□□ -0.85
USP40-213ENST00000483216 TNKS2Q9H2K2 1166 aa9.72□□□□□ -0.85
USP40-213ENST00000483216 ANTXR1Q9H6X2 564 aa9.72□□□□□ -0.85
USP40-213ENST00000483216 PPT2Q9UMR5 302 aa9.72□□□□□ -0.85
USP40-213ENST00000483216 PLAGL2Q9UPG8 496 aa9.72□□□□□ -0.85
USP40-213ENST00000483216 NME1P15531 152 aaKnown RBP9.71□□□□□ -0.86
USP40-213ENST00000483216 MISP3Q96FF7 219 aa9.71□□□□□ -0.86
USP40-213ENST00000483216 SNX11Q9Y5W9 270 aa9.71□□□□□ -0.86
USP40-213ENST00000483216 TMEM265A0A087WTH1 108 aa9.7□□□□□ -0.86
USP40-213ENST00000483216 TNFRSF10CO14798 259 aa9.7□□□□□ -0.86
USP40-213ENST00000483216 CCNFP41002 786 aa9.7□□□□□ -0.86
USP40-213ENST00000483216 GNL2Q13823 731 aaKnown RBP9.7□□□□□ -0.86
USP40-213ENST00000483216 SPACA3Q8IXA5 215 aa9.7□□□□□ -0.86
USP40-213ENST00000483216 CAPN10Q9HC96 672 aa9.7□□□□□ -0.86
USP40-213ENST00000483216 COL17A1Q9UMD9 1497 aaPredicted RBP9.7□□□□□ -0.86
USP40-213ENST00000483216 PRR33A8MZF0 331 aa9.69□□□□□ -0.86
USP40-213ENST00000483216 UBOX5O94941 541 aa9.69□□□□□ -0.86
USP40-213ENST00000483216 ATF4P18848 351 aaPredicted RBP9.69□□□□□ -0.86
USP40-213ENST00000483216 ITIH2P19823 946 aa9.69□□□□□ -0.86
USP40-213ENST00000483216 GBP1P32455 592 aa9.69□□□□□ -0.86
USP40-213ENST00000483216 NASPP49321 788 aaPredicted RBP9.69□□□□□ -0.86
USP40-213ENST00000483216 NKPD1Q17RQ9 610 aa9.69□□□□□ -0.86
USP40-213ENST00000483216 INTS3Q68E01 1043 aaKnown RBP9.69□□□□□ -0.86
USP40-213ENST00000483216 VPS37DQ86XT2 251 aa9.69□□□□□ -0.86
USP40-213ENST00000483216 Q8N3U1 123 aa9.69□□□□□ -0.86
USP40-213ENST00000483216 MFSD4AQ8N468 514 aa9.69□□□□□ -0.86
USP40-213ENST00000483216 TAB3Q8N5C8 712 aaPredicted RBP9.69□□□□□ -0.86
USP40-213ENST00000483216 RNF141Q8WVD5 230 aa9.69□□□□□ -0.86
USP40-213ENST00000483216 TINF2Q9BSI4 451 aa9.69□□□□□ -0.86
USP40-213ENST00000483216 CAPN6Q9Y6Q1 641 aa9.69□□□□□ -0.86
USP40-213ENST00000483216 CBX7O95931 251 aa9.68□□□□□ -0.86
USP40-213ENST00000483216 CLCN7P51798 805 aa9.68□□□□□ -0.86
USP40-213ENST00000483216 PRKCQQ04759 706 aa9.68□□□□□ -0.86
USP40-213ENST00000483216 FBXW10Q5XX13 1052 aa9.68□□□□□ -0.86
USP40-213ENST00000483216 VSIG10LQ86VR7 867 aa9.68□□□□□ -0.86
USP40-213ENST00000483216 STK11IPQ8N1F8 1099 aa9.68□□□□□ -0.86
USP40-213ENST00000483216 KREMEN1Q96MU8 473 aa9.68□□□□□ -0.86
USP40-213ENST00000483216 TM9SF2Q99805 663 aa9.68□□□□□ -0.86
USP40-213ENST00000483216 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP9.68□□□□□ -0.86
USP40-213ENST00000483216 CCDC39Q9UFE4 941 aa9.68□□□□□ -0.86
USP40-213ENST00000483216 VAV3Q9UKW4 847 aa9.68□□□□□ -0.86
USP40-213ENST00000483216 CCDC81Q6ZN84 652 aa9.67□□□□□ -0.86
USP40-213ENST00000483216 VWCEQ96DN2 955 aa9.67□□□□□ -0.86
USP40-213ENST00000483216 CRBNQ96SW2 442 aa9.67□□□□□ -0.86
USP40-213ENST00000483216 ASPNQ9BXN1 380 aa9.67□□□□□ -0.86
USP40-213ENST00000483216 SRRTQ9BXP5 876 aaKnown RBP9.67□□□□□ -0.86
USP40-213ENST00000483216 STRIP2Q9ULQ0 834 aa9.67□□□□□ -0.86
USP40-213ENST00000483216 FAM155AB1AL88 458 aaPredicted RBP9.66□□□□□ -0.86
USP40-213ENST00000483216 WNT11O96014 354 aa9.66□□□□□ -0.86
USP40-213ENST00000483216 POLR2BP30876 1174 aaKnown RBP9.66□□□□□ -0.86
USP40-213ENST00000483216 GIPRP48546 466 aa9.66□□□□□ -0.86
USP40-213ENST00000483216 EIF6P56537 245 aaKnown RBP9.66□□□□□ -0.86
USP40-213ENST00000483216 LSRQ86X29 649 aaPredicted RBP9.66□□□□□ -0.86
USP40-213ENST00000483216 SLC43A3Q8NBI5 491 aa9.66□□□□□ -0.86
USP40-213ENST00000483216 OR6P1Q8NGX9 317 aa9.66□□□□□ -0.86
USP40-213ENST00000483216 PIWIL2Q8TC59 973 aaKnown RBP9.66□□□□□ -0.86
USP40-213ENST00000483216 BCL7CQ8WUZ0 217 aaPredicted RBP9.66□□□□□ -0.86
USP40-213ENST00000483216 HRASLS5Q96KN8 279 aa9.66□□□□□ -0.86
USP40-213ENST00000483216 FBXL18Q96ME1 805 aa9.66□□□□□ -0.86
USP40-213ENST00000483216 ADAMTS4O75173 837 aa9.65□□□□□ -0.86
USP40-213ENST00000483216 CHMP4BP1P59074 171 aa9.65□□□□□ -0.86
USP40-213ENST00000483216 Q96M66 194 aa9.65□□□□□ -0.86
USP40-213ENST00000483216 SLC9A7Q96T83 725 aa9.65□□□□□ -0.86
USP40-213ENST00000483216 ANGEL1Q9UNK9 670 aaKnown RBP9.65□□□□□ -0.86
USP40-213ENST00000483216 SLC5A6Q9Y289 635 aa9.65□□□□□ -0.86
USP40-213ENST00000483216 ST14Q9Y5Y6 855 aa9.65□□□□□ -0.86
USP40-213ENST00000483216 ACRP10323 421 aa9.64□□□□□ -0.87
USP40-213ENST00000483216 GUCY2CP25092 1073 aa9.64□□□□□ -0.87
USP40-213ENST00000483216 TNK2Q07912 1038 aa9.64□□□□□ -0.87
USP40-213ENST00000483216 AOC3Q16853 763 aa9.64□□□□□ -0.87
USP40-213ENST00000483216 NFXL1Q6ZNB6 911 aa9.64□□□□□ -0.87
USP40-213ENST00000483216 SHDQ96IW2 340 aa9.64□□□□□ -0.87
USP40-213ENST00000483216 KCNH3Q9ULD8 1083 aa9.64□□□□□ -0.87
USP40-213ENST00000483216 ZC3H6P61129 1189 aaKnown RBP9.63□□□□□ -0.87
USP40-213ENST00000483216 RNF4P78317 190 aa9.63□□□□□ -0.87
USP40-213ENST00000483216 DTWD2Q8NBA8 298 aa9.63□□□□□ -0.87
USP40-213ENST00000483216 CPLX3Q8WVH0 158 aa9.63□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms