RNA–Protein interactions for RNA: ENST00000482879.5

SDC1-206, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 558 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-206ENST00000482879 CEP95Q96GE4 821 aa14.4□□□□□ -0.1
SDC1-206ENST00000482879 CLMNQ96JQ2 1002 aa14.4□□□□□ -0.1
SDC1-206ENST00000482879 TMEM87BQ96K49 555 aa14.4□□□□□ -0.1
SDC1-206ENST00000482879 LRRC2Q9BYS8 371 aa14.4□□□□□ -0.1
SDC1-206ENST00000482879 KANSL2Q9H9L4 492 aa14.4□□□□□ -0.1
SDC1-206ENST00000482879 PDRG1Q9NUG6 133 aa14.4□□□□□ -0.1
SDC1-206ENST00000482879 FRMD4AQ9P2Q2 1039 aaPredicted RBP14.4□□□□□ -0.1
SDC1-206ENST00000482879 WDR19Q8NEZ3 1342 aa14.4□□□□□ -0.1
SDC1-206ENST00000482879 PHIPQ8WWQ0 1821 aa14.39□□□□□ -0.11
SDC1-206ENST00000482879 UNCXA6NJT0 531 aa14.39□□□□□ -0.11
SDC1-206ENST00000482879 USP17L5A8MUK1 530 aa14.39□□□□□ -0.11
SDC1-206ENST00000482879 PTPRAP18433 802 aa14.39□□□□□ -0.11
SDC1-206ENST00000482879 FGD1P98174 961 aa14.39□□□□□ -0.11
SDC1-206ENST00000482879 ATP2B2Q01814 1243 aa14.39□□□□□ -0.11
SDC1-206ENST00000482879 ICA1Q05084 483 aa14.39□□□□□ -0.11
SDC1-206ENST00000482879 TMEM67Q5HYA8 995 aa14.39□□□□□ -0.11
SDC1-206ENST00000482879 PPP4R3BQ5MIZ7 849 aa14.39□□□□□ -0.11
SDC1-206ENST00000482879 CCDC84Q86UT8 332 aaPredicted RBP14.39□□□□□ -0.11
SDC1-206ENST00000482879 CLEC10AQ8IUN9 316 aa14.39□□□□□ -0.11
SDC1-206ENST00000482879 IGDCC4Q8TDY8 1250 aa14.39□□□□□ -0.11
SDC1-206ENST00000482879 SLC10A4Q96EP9 437 aa14.39□□□□□ -0.11
SDC1-206ENST00000482879 MTA3Q9BTC8 594 aa14.39□□□□□ -0.11
SDC1-206ENST00000482879 ELP3Q9H9T3 547 aa14.39□□□□□ -0.11
SDC1-206ENST00000482879 MTMR4Q9NYA4 1195 aa14.39□□□□□ -0.11
SDC1-206ENST00000482879 SNCAIPQ9Y6H5 919 aa14.39□□□□□ -0.11
SDC1-206ENST00000482879 TNKSO95271 1327 aa14.39□□□□□ -0.11
SDC1-206ENST00000482879 TMEM88BA6NKF7 163 aa14.38□□□□□ -0.11
SDC1-206ENST00000482879 TTLL1O95922 423 aa14.38□□□□□ -0.11
SDC1-206ENST00000482879 HUNKP57058 714 aa14.38□□□□□ -0.11
SDC1-206ENST00000482879 WTAPQ15007 396 aa14.38□□□□□ -0.11
SDC1-206ENST00000482879 Q6ZUG5 572 aa14.38□□□□□ -0.11
SDC1-206ENST00000482879 DGKHQ86XP1 1220 aa14.38□□□□□ -0.11
SDC1-206ENST00000482879 ENAHQ8N8S7 591 aaPredicted RBP14.38□□□□□ -0.11
SDC1-206ENST00000482879 TTC14Q96N46 770 aa14.38□□□□□ -0.11
SDC1-206ENST00000482879 GPHNQ9NQX3 736 aaPredicted RBP14.38□□□□□ -0.11
SDC1-206ENST00000482879 NYAP2Q9P242 653 aa14.38□□□□□ -0.11
SDC1-206ENST00000482879 CLIP2Q9UDT6 1046 aa14.38□□□□□ -0.11
SDC1-206ENST00000482879 STX8Q9UNK0 236 aa14.38□□□□□ -0.11
SDC1-206ENST00000482879 SH2B2O14492 632 aaPredicted RBP14.37□□□□□ -0.11
SDC1-206ENST00000482879 EEF2P13639 858 aaKnown RBP14.37□□□□□ -0.11
SDC1-206ENST00000482879 SEC23AQ15436 765 aa14.37□□□□□ -0.11
SDC1-206ENST00000482879 IFIT1BQ5T764 474 aaKnown RBP14.37□□□□□ -0.11
SDC1-206ENST00000482879 RCSD1Q6JBY9 416 aa14.37□□□□□ -0.11
SDC1-206ENST00000482879 ERO1BQ86YB8 467 aa14.37□□□□□ -0.11
SDC1-206ENST00000482879 SIAH1Q8IUQ4 282 aa14.37□□□□□ -0.11
SDC1-206ENST00000482879 TMTC2Q8N394 836 aa14.37□□□□□ -0.11
SDC1-206ENST00000482879 ANKS1AQ92625 1134 aa14.37□□□□□ -0.11
SDC1-206ENST00000482879 LY9Q9HBG7 655 aa14.37□□□□□ -0.11
SDC1-206ENST00000482879 AS3MTQ9HBK9 375 aa14.37□□□□□ -0.11
SDC1-206ENST00000482879 ARHGEF10LQ9HCE6 1279 aa14.37□□□□□ -0.11
SDC1-206ENST00000482879 ABT1Q9ULW3 272 aaKnown RBP14.37□□□□□ -0.11
SDC1-206ENST00000482879 ZHX2Q9Y6X8 837 aa14.37□□□□□ -0.11
SDC1-206ENST00000482879 TOP1P11387 765 aaKnown RBP14.36□□□□□ -0.11
SDC1-206ENST00000482879 NOVP48745 357 aa14.36□□□□□ -0.11
SDC1-206ENST00000482879 NFXL1Q6ZNB6 911 aa14.36□□□□□ -0.11
SDC1-206ENST00000482879 SAPCD2Q86UD0 394 aa14.36□□□□□ -0.11
SDC1-206ENST00000482879 ACER1Q8TDN7 264 aa14.36□□□□□ -0.11
SDC1-206ENST00000482879 CNKSR2Q8WXI2 1034 aa14.36□□□□□ -0.11
SDC1-206ENST00000482879 MKL1Q969V6 931 aa14.36□□□□□ -0.11
SDC1-206ENST00000482879 TMEM47Q9BQJ4 181 aa14.36□□□□□ -0.11
SDC1-206ENST00000482879 WDR18Q9BV38 432 aa14.36□□□□□ -0.11
SDC1-206ENST00000482879 ALDH8A1Q9H2A2 487 aaPredicted RBP14.36□□□□□ -0.11
SDC1-206ENST00000482879 KAT14Q9H8E8 782 aa14.36□□□□□ -0.11
SDC1-206ENST00000482879 SENP2Q9HC62 589 aa14.36□□□□□ -0.11
SDC1-206ENST00000482879 TLL2Q9Y6L7 1015 aa14.36□□□□□ -0.11
SDC1-206ENST00000482879 CCDC69A6NI79 296 aa14.35□□□□□ -0.11
SDC1-206ENST00000482879 SPDYE5A6NIY4 337 aa14.35□□□□□ -0.11
SDC1-206ENST00000482879 ST18O60284 1047 aa14.35□□□□□ -0.11
SDC1-206ENST00000482879 LIFRP42702 1097 aa14.35□□□□□ -0.11
SDC1-206ENST00000482879 ECE1P42892 770 aa14.35□□□□□ -0.11
SDC1-206ENST00000482879 APLP1P51693 650 aa14.35□□□□□ -0.11
SDC1-206ENST00000482879 PPATQ06203 517 aa14.35□□□□□ -0.11
SDC1-206ENST00000482879 SPP2Q13103 211 aa14.35□□□□□ -0.11
SDC1-206ENST00000482879 TOB2Q14106 344 aaPredicted RBP14.35□□□□□ -0.11
SDC1-206ENST00000482879 LRRC47Q8N1G4 583 aaKnown RBP14.35□□□□□ -0.11
SDC1-206ENST00000482879 FBXL16Q8N461 479 aa14.35□□□□□ -0.11
SDC1-206ENST00000482879 ZNF280CQ8ND82 737 aa14.35□□□□□ -0.11
SDC1-206ENST00000482879 IL27Q8NEV9 243 aa14.35□□□□□ -0.11
SDC1-206ENST00000482879 BRF1Q92994 677 aa14.35□□□□□ -0.11
SDC1-206ENST00000482879 OPTNQ96CV9 577 aa14.35□□□□□ -0.11
SDC1-206ENST00000482879 OTUD5Q96G74 571 aa14.35□□□□□ -0.11
SDC1-206ENST00000482879 FEZ1Q99689 392 aa14.35□□□□□ -0.11
SDC1-206ENST00000482879 AGXT2Q9BYV1 514 aa14.35□□□□□ -0.11
SDC1-206ENST00000482879 TBC1D2Q9BYX2 928 aa14.35□□□□□ -0.11
SDC1-206ENST00000482879 SH2D4AQ9H788 454 aa14.35□□□□□ -0.11
SDC1-206ENST00000482879 TMX2Q9Y320 296 aa14.35□□□□□ -0.11
SDC1-206ENST00000482879 AFG3L2Q9Y4W6 797 aa14.35□□□□□ -0.11
SDC1-206ENST00000482879 PTPRFP10586 1907 aa14.35□□□□□ -0.11
SDC1-206ENST00000482879 A0A1W2PRG0 241 aa14.34□□□□□ -0.11
SDC1-206ENST00000482879 TRIM75PA6NK02 468 aa14.34□□□□□ -0.11
SDC1-206ENST00000482879 USP17L10C9JJH3 530 aa14.34□□□□□ -0.11
SDC1-206ENST00000482879 ZNF157P51786 506 aaPredicted RBP14.34□□□□□ -0.11
SDC1-206ENST00000482879 AK2P54819 239 aa14.34□□□□□ -0.11
SDC1-206ENST00000482879 APOBRQ0VD83 1088 aa14.34□□□□□ -0.11
SDC1-206ENST00000482879 PPIL2Q13356 520 aa14.34□□□□□ -0.11
SDC1-206ENST00000482879 ANKRD1Q15327 319 aa14.34□□□□□ -0.11
SDC1-206ENST00000482879 WNK4Q96J92 1243 aa14.34□□□□□ -0.11
SDC1-206ENST00000482879 LARP6Q9BRS8 491 aaKnown RBP14.34□□□□□ -0.11
SDC1-206ENST00000482879 NAP1L2Q9ULW6 460 aaPredicted RBP14.34□□□□□ -0.11
SDC1-206ENST00000482879 MTMR7Q9Y216 660 aa14.34□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms