RNA–Protein interactions for RNA: ENST00000479965.5

CCDC88B-207, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 3,102 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-207ENST00000479965 CCDC122Q5T0U0 273 aa21.18■□□□□ 0.98
CCDC88B-207ENST00000479965 CAPS2Q9BXY5 557 aa21.18■□□□□ 0.98
CCDC88B-207ENST00000479965 PHF8Q9UPP1 1060 aa21.18■□□□□ 0.98
CCDC88B-207ENST00000479965 MAPK8IP1Q9UQF2 711 aa21.18■□□□□ 0.98
CCDC88B-207ENST00000479965 CPDO75976 1380 aa21.18■□□□□ 0.98
CCDC88B-207ENST00000479965 MCM3P25205 808 aa21.18■□□□□ 0.98
CCDC88B-207ENST00000479965 EPN1Q9Y6I3 576 aaPredicted RBP21.18■□□□□ 0.98
CCDC88B-207ENST00000479965 ZNF185O15231 689 aa21.18■□□□□ 0.98
CCDC88B-207ENST00000479965 CEBPAP49715 358 aaPredicted RBP21.18■□□□□ 0.98
CCDC88B-207ENST00000479965 KRT31Q15323 416 aa21.18■□□□□ 0.98
CCDC88B-207ENST00000479965 CCDC51Q96ER9 411 aa21.18■□□□□ 0.98
CCDC88B-207ENST00000479965 POLD4Q9HCU8 107 aa21.18■□□□□ 0.98
CCDC88B-207ENST00000479965 MYO1AQ9UBC5 1043 aa21.18■□□□□ 0.98
CCDC88B-207ENST00000479965 A1BGP04217 495 aa21.17■□□□□ 0.98
CCDC88B-207ENST00000479965 IBSPP21815 317 aaPredicted RBP21.17■□□□□ 0.98
CCDC88B-207ENST00000479965 NTRK3Q16288 839 aa21.17■□□□□ 0.98
CCDC88B-207ENST00000479965 RRP12Q5JTH9 1297 aaKnown RBP21.17■□□□□ 0.98
CCDC88B-207ENST00000479965 XAGE2Q96GT9 111 aa21.17■□□□□ 0.98
CCDC88B-207ENST00000479965 GNL3LQ9NVN8 582 aaKnown RBP21.17■□□□□ 0.98
CCDC88B-207ENST00000479965 IFIT3O14879 490 aaKnown RBP21.17■□□□□ 0.98
CCDC88B-207ENST00000479965 ZFYP08048 801 aaPredicted RBP21.17■□□□□ 0.98
CCDC88B-207ENST00000479965 TRAPPC11Q7Z392 1133 aa21.17■□□□□ 0.98
CCDC88B-207ENST00000479965 CEP89Q96ST8 783 aa21.17■□□□□ 0.98
CCDC88B-207ENST00000479965 BLZF1Q9H2G9 400 aa21.17■□□□□ 0.98
CCDC88B-207ENST00000479965 JADE2Q9NQC1 790 aa21.17■□□□□ 0.98
CCDC88B-207ENST00000479965 CAPN7Q9Y6W3 813 aa21.17■□□□□ 0.98
CCDC88B-207ENST00000479965 A0A087X0B3 334 aa21.16■□□□□ 0.98
CCDC88B-207ENST00000479965 AGPSO00116 658 aa21.16■□□□□ 0.98
CCDC88B-207ENST00000479965 NDUFA10O95299 355 aa21.16■□□□□ 0.98
CCDC88B-207ENST00000479965 SND1Q7KZF4 910 aaKnown RBP eCLIP21.16■□□□□ 0.98
CCDC88B-207ENST00000479965 ZKSCAN3Q9BRR0 538 aa21.16■□□□□ 0.98
CCDC88B-207ENST00000479965 PLEKHG1Q9ULL1 1385 aa21.16■□□□□ 0.98
CCDC88B-207ENST00000479965 MATR3P43243 847 aaKnown RBP eCLIP21.16■□□□□ 0.98
CCDC88B-207ENST00000479965 C2orf54Q08AI8 447 aa21.16■□□□□ 0.98
CCDC88B-207ENST00000479965 RILPL1Q5EBL4 403 aa21.16■□□□□ 0.98
CCDC88B-207ENST00000479965 KIAA1328Q86T90 577 aa21.16■□□□□ 0.98
CCDC88B-207ENST00000479965 OXER1Q8TDS5 423 aa21.16■□□□□ 0.98
CCDC88B-207ENST00000479965 MMP1P03956 469 aa21.15■□□□□ 0.98
CCDC88B-207ENST00000479965 KCNA6P17658 529 aa21.15■□□□□ 0.98
CCDC88B-207ENST00000479965 CASP7P55210 303 aa21.15■□□□□ 0.98
CCDC88B-207ENST00000479965 CUL4BQ13620 913 aa21.15■□□□□ 0.98
CCDC88B-207ENST00000479965 CDKAL1Q5VV42 579 aa21.15■□□□□ 0.98
CCDC88B-207ENST00000479965 JAKMIP2Q96AA8 810 aa21.15■□□□□ 0.98
CCDC88B-207ENST00000479965 IDH1O75874 414 aaKnown RBP21.15■□□□□ 0.98
CCDC88B-207ENST00000479965 UBXN1Q04323 297 aa21.15■□□□□ 0.98
CCDC88B-207ENST00000479965 RRAGBQ5VZM2 374 aa21.15■□□□□ 0.98
CCDC88B-207ENST00000479965 FAM217BQ9NTX9 383 aaPredicted RBP21.15■□□□□ 0.98
CCDC88B-207ENST00000479965 DIP2AQ14689 1571 aa21.15■□□□□ 0.98
CCDC88B-207ENST00000479965 SNRPA1P09661 255 aaKnown RBP21.15■□□□□ 0.98
CCDC88B-207ENST00000479965 DPYDQ12882 1025 aa21.15■□□□□ 0.98
CCDC88B-207ENST00000479965 SWT1Q5T5J6 900 aaKnown RBP21.15■□□□□ 0.98
CCDC88B-207ENST00000479965 SLC52A2Q9HAB3 445 aa21.15■□□□□ 0.98
CCDC88B-207ENST00000479965 CT47A1Q5JQC4 288 aaPredicted RBP21.14■□□□□ 0.98
CCDC88B-207ENST00000479965 KCNV1Q6PIU1 500 aa21.14■□□□□ 0.98
CCDC88B-207ENST00000479965 TRIM22Q8IYM9 498 aa21.14■□□□□ 0.98
CCDC88B-207ENST00000479965 PAGE5Q96GU1 130 aa21.14■□□□□ 0.98
CCDC88B-207ENST00000479965 GPR108Q9NPR9 543 aa21.14■□□□□ 0.98
CCDC88B-207ENST00000479965 REXO2Q9Y3B8 237 aaKnown RBP21.14■□□□□ 0.98
CCDC88B-207ENST00000479965 SRPRBQ9Y5M8 271 aaKnown RBP21.14■□□□□ 0.98
CCDC88B-207ENST00000479965 ZC3H4Q9UPT8 1303 aaKnown RBP21.14■□□□□ 0.97
CCDC88B-207ENST00000479965 EP400NLQ6ZTU2 488 aa21.14■□□□□ 0.97
CCDC88B-207ENST00000479965 ANKRD18AQ8IVF6 992 aa21.14■□□□□ 0.97
CCDC88B-207ENST00000479965 NUP133Q8WUM0 1156 aa21.14■□□□□ 0.97
CCDC88B-207ENST00000479965 ZBTB3Q9H5J0 574 aa21.14■□□□□ 0.97
CCDC88B-207ENST00000479965 USP8P40818 1118 aa21.13■□□□□ 0.97
CCDC88B-207ENST00000479965 SETQ01105 290 aaPredicted RBP21.13■□□□□ 0.97
CCDC88B-207ENST00000479965 PPFIA1Q13136 1202 aa21.13■□□□□ 0.97
CCDC88B-207ENST00000479965 TSR1Q2NL82 804 aaKnown RBP21.13■□□□□ 0.97
CCDC88B-207ENST00000479965 ESCO1Q5FWF5 840 aa21.13■□□□□ 0.97
CCDC88B-207ENST00000479965 ELOA2Q8IYF1 753 aaPredicted RBP21.13■□□□□ 0.97
CCDC88B-207ENST00000479965 KCNH5Q8NCM2 988 aa21.13■□□□□ 0.97
CCDC88B-207ENST00000479965 AIDAQ96BJ3 306 aa21.13■□□□□ 0.97
CCDC88B-207ENST00000479965 JPH2Q9BR39 696 aaPredicted RBP21.13■□□□□ 0.97
CCDC88B-207ENST00000479965 FAM205CA6NFA0 338 aa21.13■□□□□ 0.97
CCDC88B-207ENST00000479965 NDUFAB1O14561 156 aa21.13■□□□□ 0.97
CCDC88B-207ENST00000479965 ZEB2O60315 1214 aa21.13■□□□□ 0.97
CCDC88B-207ENST00000479965 RRP36Q96EU6 259 aaKnown RBP21.13■□□□□ 0.97
CCDC88B-207ENST00000479965 MACROD2A1Z1Q3 448 aa21.13■□□□□ 0.97
CCDC88B-207ENST00000479965 PPP1R3GB7ZBB8 358 aa21.13■□□□□ 0.97
CCDC88B-207ENST00000479965 COPB1P53618 953 aaKnown RBP21.13■□□□□ 0.97
CCDC88B-207ENST00000479965 NBPF14Q5TI25 921 aa21.13■□□□□ 0.97
CCDC88B-207ENST00000479965 CCNI2Q6ZMN8 369 aaPredicted RBP21.13■□□□□ 0.97
CCDC88B-207ENST00000479965 LY9Q9HBG7 655 aa21.13■□□□□ 0.97
CCDC88B-207ENST00000479965 MYO1FO00160 1098 aa21.12■□□□□ 0.97
CCDC88B-207ENST00000479965 SYMPKQ92797 1274 aaKnown RBP21.12■□□□□ 0.97
CCDC88B-207ENST00000479965 RUFY1Q96T51 708 aa21.12■□□□□ 0.97
CCDC88B-207ENST00000479965 CWC25Q9NXE8 425 aaPredicted RBP21.12■□□□□ 0.97
CCDC88B-207ENST00000479965 KIAA0754O94854 1291 aa21.12■□□□□ 0.97
CCDC88B-207ENST00000479965 ATP6V1AP38606 617 aa21.12■□□□□ 0.97
CCDC88B-207ENST00000479965 ATP1A2P50993 1020 aa21.12■□□□□ 0.97
CCDC88B-207ENST00000479965 SPATA20Q8TB22 786 aa21.12■□□□□ 0.97
CCDC88B-207ENST00000479965 IGDCC4Q8TDY8 1250 aa21.12■□□□□ 0.97
CCDC88B-207ENST00000479965 WASF1Q92558 559 aa21.12■□□□□ 0.97
CCDC88B-207ENST00000479965 CEP131Q9UPN4 1083 aa21.12■□□□□ 0.97
CCDC88B-207ENST00000479965 ZNF330Q9Y3S2 320 aaPredicted RBP21.12■□□□□ 0.97
CCDC88B-207ENST00000479965 SHOX2O60902 331 aaPredicted RBP21.11■□□□□ 0.97
CCDC88B-207ENST00000479965 PPARDQ03181 441 aa21.11■□□□□ 0.97
CCDC88B-207ENST00000479965 CTDSPL2Q05D32 466 aa21.11■□□□□ 0.97
CCDC88B-207ENST00000479965 PDCLQ13371 301 aa21.11■□□□□ 0.97
CCDC88B-207ENST00000479965 CCDC57Q2TAC2 916 aa21.11■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 62.3 ms