RNA–Protein interactions for RNA: ENST00000479868.6

SEC13-216, Transcript of SEC13 homolog, nuclear pore and COPII coat complex component, humanhuman

TSL 1 (best)

Gene SEC13, Length 2,374 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEC13-216ENST00000479868 NOLC1Q14978 699 aaKnown RBP eCLIP14.97□□□□□ -0.012e-6■■■■■ 27.8
SEC13-216ENST00000479868 ZRSR1Q15695 479 aaKnown RBP14.97□□□□□ -0.01
SEC13-216ENST00000479868 RTFDC1Q9BY42 306 aaPredicted RBP14.97□□□□□ -0.01
SEC13-216ENST00000479868 IL17RBQ9NRM6 502 aa14.97□□□□□ -0.01
SEC13-216ENST00000479868 CLIP2Q9UDT6 1046 aa14.97□□□□□ -0.01
SEC13-216ENST00000479868 FBXO2Q9UK22 296 aaPredicted RBP14.97□□□□□ -0.01
SEC13-216ENST00000479868 KCNH3Q9ULD8 1083 aa14.97□□□□□ -0.01
SEC13-216ENST00000479868 IGSF3O75054 1194 aa14.96□□□□□ -0.01
SEC13-216ENST00000479868 BAG3O95817 575 aa14.96□□□□□ -0.01
SEC13-216ENST00000479868 PTPREP23469 700 aa14.96□□□□□ -0.01
SEC13-216ENST00000479868 HOXA10P31260 410 aaPredicted RBP14.96□□□□□ -0.01
SEC13-216ENST00000479868 RBM6P78332 1123 aaKnown RBP14.96□□□□□ -0.01
SEC13-216ENST00000479868 TFAP4Q01664 338 aa14.96□□□□□ -0.01
SEC13-216ENST00000479868 LONRF3Q496Y0 759 aa14.96□□□□□ -0.01
SEC13-216ENST00000479868 CTCFLQ8NI51 663 aaPredicted RBP14.96□□□□□ -0.01
SEC13-216ENST00000479868 R3HCC1Q9Y3T6 440 aaKnown RBP14.96□□□□□ -0.01
SEC13-216ENST00000479868 BBOX1O75936 387 aa14.96□□□□□ -0.02
SEC13-216ENST00000479868 NLRP12P59046 1061 aa14.96□□□□□ -0.02
SEC13-216ENST00000479868 PNOCQ13519 176 aa14.96□□□□□ -0.02
SEC13-216ENST00000479868 NPY5RQ15761 445 aa14.96□□□□□ -0.02
SEC13-216ENST00000479868 TXNRD1Q16881 649 aa14.96□□□□□ -0.02
SEC13-216ENST00000479868 ISM2Q6H9L7 571 aa14.96□□□□□ -0.02
SEC13-216ENST00000479868 METTL16Q86W50 562 aaKnown RBP14.96□□□□□ -0.02
SEC13-216ENST00000479868 TBC1D16Q8TBP0 767 aa14.96□□□□□ -0.02
SEC13-216ENST00000479868 TUBE1Q9UJT0 475 aa14.96□□□□□ -0.02
SEC13-216ENST00000479868 ROBO3Q96MS0 1386 aa14.95□□□□□ -0.02
SEC13-216ENST00000479868 KRT2P35908 639 aa14.95□□□□□ -0.02
SEC13-216ENST00000479868 PLCD1P51178 756 aa14.95□□□□□ -0.02
SEC13-216ENST00000479868 MAPKAPK5Q8IW41 473 aa14.95□□□□□ -0.02
SEC13-216ENST00000479868 KIAA1524Q8TCG1 905 aa14.95□□□□□ -0.02
SEC13-216ENST00000479868 LTBP1Q14766 1721 aa14.95□□□□□ -0.02
SEC13-216ENST00000479868 LDHCP07864 332 aa14.95□□□□□ -0.02
SEC13-216ENST00000479868 CDC25BP30305 580 aa14.95□□□□□ -0.02
SEC13-216ENST00000479868 BTDP43251 543 aa14.95□□□□□ -0.02
SEC13-216ENST00000479868 CCDC144BQ3MJ40 725 aa14.95□□□□□ -0.02
SEC13-216ENST00000479868 NOM1Q5C9Z4 860 aaKnown RBP14.95□□□□□ -0.02
SEC13-216ENST00000479868 KRBA2Q6ZNG9 492 aa14.95□□□□□ -0.02
SEC13-216ENST00000479868 SLC44A5Q8NCS7 719 aa14.95□□□□□ -0.02
SEC13-216ENST00000479868 MRFAP1L1Q96HT8 127 aa14.95□□□□□ -0.02
SEC13-216ENST00000479868 BPIFA3Q9BQP9 254 aa14.95□□□□□ -0.02
SEC13-216ENST00000479868 NOL10Q9BSC4 688 aaKnown RBP14.95□□□□□ -0.02
SEC13-216ENST00000479868 SAP30BPQ9UHR5 308 aaKnown RBP14.95□□□□□ -0.02
SEC13-216ENST00000479868 KLRG2A4D1S0 409 aaPredicted RBP14.94□□□□□ -0.02
SEC13-216ENST00000479868 VEGFAP15692 232 aaPredicted RBP14.94□□□□□ -0.02
SEC13-216ENST00000479868 LRMPQ12912 555 aa14.94□□□□□ -0.02
SEC13-216ENST00000479868 CRAMP1Q96RY5 1269 aa14.94□□□□□ -0.02
SEC13-216ENST00000479868 ANKRD31Q8N7Z5 1873 aa14.94□□□□□ -0.02
SEC13-216ENST00000479868 LRRC37AA6NMS7 1700 aa14.94□□□□□ -0.02
SEC13-216ENST00000479868 USP17L3A6NCW0 530 aa14.93□□□□□ -0.02
SEC13-216ENST00000479868 USP17L4A6NCW7 530 aa14.93□□□□□ -0.02
SEC13-216ENST00000479868 WNT7AO00755 349 aa14.93□□□□□ -0.02
SEC13-216ENST00000479868 MFSD14BQ5SR56 506 aa14.93□□□□□ -0.02
SEC13-216ENST00000479868 USP17L1Q7RTZ2 530 aa14.93□□□□□ -0.02
SEC13-216ENST00000479868 FOXP4Q8IVH2 680 aaPredicted RBP14.93□□□□□ -0.02
SEC13-216ENST00000479868 CNNM3Q8NE01 707 aa14.93□□□□□ -0.02
SEC13-216ENST00000479868 KAT14Q9H8E8 782 aa14.93□□□□□ -0.02
SEC13-216ENST00000479868 MKNK2Q9HBH9 465 aa14.93□□□□□ -0.02
SEC13-216ENST00000479868 SPTLC3Q9NUV7 552 aa14.93□□□□□ -0.02
SEC13-216ENST00000479868 SRPRBQ9Y5M8 271 aaKnown RBP14.93□□□□□ -0.02
SEC13-216ENST00000479868 C6orf229H3BNL8 230 aa14.93□□□□□ -0.02
SEC13-216ENST00000479868 FOXN1O15353 648 aa14.93□□□□□ -0.02
SEC13-216ENST00000479868 DGKHQ86XP1 1220 aa14.93□□□□□ -0.02
SEC13-216ENST00000479868 TNFRSF25Q93038 417 aa14.93□□□□□ -0.02
SEC13-216ENST00000479868 CEP131Q9UPN4 1083 aa14.93□□□□□ -0.02
SEC13-216ENST00000479868 GPR75-ASB3A0A0A6YYF3 556 aa14.92□□□□□ -0.02
SEC13-216ENST00000479868 TRIM75PA6NK02 468 aa14.92□□□□□ -0.02
SEC13-216ENST00000479868 SCG2P13521 617 aa14.92□□□□□ -0.02
SEC13-216ENST00000479868 ZNF827Q17R98 1081 aa14.92□□□□□ -0.02
SEC13-216ENST00000479868 USP49Q70CQ1 688 aa14.92□□□□□ -0.02
SEC13-216ENST00000479868 AMOTL1Q8IY63 956 aa14.92□□□□□ -0.02
SEC13-216ENST00000479868 PNMA1Q8ND90 353 aa14.92□□□□□ -0.02
SEC13-216ENST00000479868 DDX60LQ5H9U9 1706 aaKnown RBP14.92□□□□□ -0.02
SEC13-216ENST00000479868 TSPY3P0CV98 308 aa14.92□□□□□ -0.02
SEC13-216ENST00000479868 TSPY8P0CW00 308 aa14.92□□□□□ -0.02
SEC13-216ENST00000479868 MDM2Q00987 491 aaPredicted RBP14.92□□□□□ -0.02
SEC13-216ENST00000479868 NCAPHQ15003 741 aa14.92□□□□□ -0.02
SEC13-216ENST00000479868 PFKFB3Q16875 520 aaPredicted RBP14.92□□□□□ -0.02
SEC13-216ENST00000479868 STAG2Q8N3U4 1231 aa14.92□□□□□ -0.02
SEC13-216ENST00000479868 ZNF579Q8NAF0 562 aaKnown RBP14.92□□□□□ -0.02
SEC13-216ENST00000479868 CSRNP2Q9H175 543 aa14.92□□□□□ -0.02
SEC13-216ENST00000479868 FAM13BQ9NYF5 915 aa14.92□□□□□ -0.02
SEC13-216ENST00000479868 ADAMTS3O15072 1205 aa14.91□□□□□ -0.02
SEC13-216ENST00000479868 POLR2DO15514 142 aaKnown RBP14.91□□□□□ -0.02
SEC13-216ENST00000479868 KIF5BP33176 963 aa14.91□□□□□ -0.02
SEC13-216ENST00000479868 TEX11Q8IYF3 940 aa14.91□□□□□ -0.02
SEC13-216ENST00000479868 ANKS1AQ92625 1134 aa14.91□□□□□ -0.02
SEC13-216ENST00000479868 BRMS1Q9HCU9 246 aa14.91□□□□□ -0.02
SEC13-216ENST00000479868 PCDHA5Q9Y5H7 936 aa14.91□□□□□ -0.02
SEC13-216ENST00000479868 PPEF1O14829 653 aaPredicted RBP14.91□□□□□ -0.02
SEC13-216ENST00000479868 RASA1P20936 1047 aa14.91□□□□□ -0.02
SEC13-216ENST00000479868 RHBDL3P58872 404 aa14.91□□□□□ -0.02
SEC13-216ENST00000479868 DNTTIP2Q5QJE6 756 aaKnown RBP14.91□□□□□ -0.02
SEC13-216ENST00000479868 CACTINQ8WUQ7 758 aaKnown RBP14.91□□□□□ -0.02
SEC13-216ENST00000479868 FLT1P17948 1338 aa14.9□□□□□ -0.02
SEC13-216ENST00000479868 OLFM4Q6UX06 510 aa14.9□□□□□ -0.02
SEC13-216ENST00000479868 SP8Q8IXZ3 490 aa14.9□□□□□ -0.02
SEC13-216ENST00000479868 ZNF444Q8N0Y2 327 aaPredicted RBP14.9□□□□□ -0.02
SEC13-216ENST00000479868 PDILTQ8N807 584 aa14.9□□□□□ -0.02
SEC13-216ENST00000479868 SERTAD1Q9UHV2 236 aa14.9□□□□□ -0.02
SEC13-216ENST00000479868 MYH1P12882 1939 aa14.9□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms