RNA–Protein interactions for RNA: ENST00000477935.1

VPS50-214, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2

Gene VPS50, Length 760 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-214ENST00000477935 POLR3KQ9Y2Y1 108 aaPredicted RBP7.61□□□□□ -1.19
VPS50-214ENST00000477935 PPRC1Q5VV67 1664 aaKnown RBP7.6□□□□□ -1.19
VPS50-214ENST00000477935 ROBO2Q9HCK4 1378 aa7.6□□□□□ -1.19
VPS50-214ENST00000477935 PRR36Q9H6K5 1346 aa7.6□□□□□ -1.19
VPS50-214ENST00000477935 SLITRK5O94991 958 aa7.6□□□□□ -1.19
VPS50-214ENST00000477935 CST3P01034 146 aaPredicted RBP7.6□□□□□ -1.19
VPS50-214ENST00000477935 PLCG1P19174 1290 aa7.6□□□□□ -1.19
VPS50-214ENST00000477935 ZNF394Q53GI3 561 aa7.6□□□□□ -1.19
VPS50-214ENST00000477935 USP48Q86UV5 1035 aa7.6□□□□□ -1.19
VPS50-214ENST00000477935 MCATQ8IVS2 390 aaKnown RBP7.6□□□□□ -1.19
VPS50-214ENST00000477935 FAM181AQ8N9Y4 354 aa7.6□□□□□ -1.19
VPS50-214ENST00000477935 XAGE3Q8WTP9 111 aa7.6□□□□□ -1.19
VPS50-214ENST00000477935 HEXIM2Q96MH2 286 aaKnown RBP7.6□□□□□ -1.19
VPS50-214ENST00000477935 MIPEPQ99797 713 aa7.6□□□□□ -1.19
VPS50-214ENST00000477935 LRRC3Q9BY71 257 aa7.6□□□□□ -1.19
VPS50-214ENST00000477935 PODXL2Q9NZ53 605 aa7.6□□□□□ -1.19
VPS50-214ENST00000477935 PCDHGB7Q9Y5F8 929 aa7.6□□□□□ -1.19
VPS50-214ENST00000477935 U3KQE9 123 aa7.6□□□□□ -1.19
VPS50-214ENST00000477935 EPRSP07814 1512 aaKnown RBP7.6□□□□□ -1.19
VPS50-214ENST00000477935 KIAA0586Q9BVV6 1533 aa7.6□□□□□ -1.19
VPS50-214ENST00000477935 TNIKQ9UKE5 1360 aa7.59□□□□□ -1.19
VPS50-214ENST00000477935 PCF11O94913 1555 aaKnown RBP7.59□□□□□ -1.19
VPS50-214ENST00000477935 ADAMTS4O75173 837 aa7.59□□□□□ -1.19
VPS50-214ENST00000477935 CRKP46108 304 aa7.59□□□□□ -1.19
VPS50-214ENST00000477935 CWF19L2Q2TBE0 894 aaKnown RBP7.59□□□□□ -1.19
VPS50-214ENST00000477935 SLC6A19Q695T7 634 aa7.59□□□□□ -1.19
VPS50-214ENST00000477935 FAM214BQ7L5A3 538 aa7.59□□□□□ -1.19
VPS50-214ENST00000477935 NBPF11Q86T75 865 aa7.59□□□□□ -1.19
VPS50-214ENST00000477935 UBP1Q9NZI7 540 aa7.59□□□□□ -1.19
VPS50-214ENST00000477935 GTF2IRD1Q9UHL9 959 aa7.59□□□□□ -1.19
VPS50-214ENST00000477935 SPATA31D1Q6ZQQ2 1576 aa7.59□□□□□ -1.2
VPS50-214ENST00000477935 UHRF1BP1LA0JNW5 1464 aa7.58□□□□□ -1.2
VPS50-214ENST00000477935 PRNPP04156 253 aa7.58□□□□□ -1.2
VPS50-214ENST00000477935 OXCT1P55809 520 aa7.58□□□□□ -1.2
VPS50-214ENST00000477935 TMEM201Q5SNT2 666 aa7.58□□□□□ -1.2
VPS50-214ENST00000477935 XP32Q5T750 250 aa7.58□□□□□ -1.2
VPS50-214ENST00000477935 LETMD1Q6P1Q0 360 aa7.58□□□□□ -1.2
VPS50-214ENST00000477935 ARHGAP27Q6ZUM4 889 aa7.58□□□□□ -1.2
VPS50-214ENST00000477935 PLD6Q8N2A8 252 aaKnown RBP7.58□□□□□ -1.2
VPS50-214ENST00000477935 RIN3Q8TB24 985 aa7.58□□□□□ -1.2
VPS50-214ENST00000477935 SPON2Q9BUD6 331 aa7.58□□□□□ -1.2
VPS50-214ENST00000477935 MKNK2Q9HBH9 465 aa7.58□□□□□ -1.2
VPS50-214ENST00000477935 BSDC1Q9NW68 430 aaPredicted RBP7.58□□□□□ -1.2
VPS50-214ENST00000477935 REV1Q9UBZ9 1251 aa7.58□□□□□ -1.2
VPS50-214ENST00000477935 CCDC39Q9UFE4 941 aa7.58□□□□□ -1.2
VPS50-214ENST00000477935 CARMIL2Q6F5E8 1435 aa7.58□□□□□ -1.2
VPS50-214ENST00000477935 UPK3BL1B0FP48 263 aa7.57□□□□□ -1.2
VPS50-214ENST00000477935 UPK3BL2E5RIL1 263 aa7.57□□□□□ -1.2
VPS50-214ENST00000477935 IGF2BP3O00425 579 aaKnown RBP eCLIP7.57□□□□□ -1.2
VPS50-214ENST00000477935 HTR3BO95264 441 aa7.57□□□□□ -1.2
VPS50-214ENST00000477935 CEACAM5P06731 702 aa7.57□□□□□ -1.2
VPS50-214ENST00000477935 METTL16Q86W50 562 aaKnown RBP7.57□□□□□ -1.2
VPS50-214ENST00000477935 KIAA0825Q8IV33 1275 aa7.57□□□□□ -1.2
VPS50-214ENST00000477935 NETO1Q8TDF5 533 aa7.57□□□□□ -1.2
VPS50-214ENST00000477935 NT5C1AQ9BXI3 368 aa7.57□□□□□ -1.2
VPS50-214ENST00000477935 BRMS1Q9HCU9 246 aa7.57□□□□□ -1.2
VPS50-214ENST00000477935 PRDM5Q9NQX1 630 aaPredicted RBP7.57□□□□□ -1.2
VPS50-214ENST00000477935 MAPK8IP1Q9UQF2 711 aa7.57□□□□□ -1.2
VPS50-214ENST00000477935 TTBK1Q5TCY1 1321 aaPredicted RBP7.56□□□□□ -1.2
VPS50-214ENST00000477935 UACAQ9BZF9 1416 aa7.56□□□□□ -1.2
VPS50-214ENST00000477935 WNT11O96014 354 aa7.56□□□□□ -1.2
VPS50-214ENST00000477935 HSPA2P54652 639 aa7.56□□□□□ -1.2
VPS50-214ENST00000477935 RACK1P63244 317 aaKnown RBP7.56□□□□□ -1.2
VPS50-214ENST00000477935 APOBRQ0VD83 1088 aa7.56□□□□□ -1.2
VPS50-214ENST00000477935 SEZ6Q53EL9 994 aa7.56□□□□□ -1.2
VPS50-214ENST00000477935 VSIG10LQ86VR7 867 aa7.56□□□□□ -1.2
VPS50-214ENST00000477935 FAM13CQ8NE31 585 aa7.56□□□□□ -1.2
VPS50-214ENST00000477935 ZNF428Q96B54 188 aa7.56□□□□□ -1.2
VPS50-214ENST00000477935 EAF1Q96JC9 268 aaPredicted RBP7.56□□□□□ -1.2
VPS50-214ENST00000477935 DDX41Q9UJV9 622 aaKnown RBP7.56□□□□□ -1.2
VPS50-214ENST00000477935 TPX2Q9ULW0 747 aaKnown RBP7.56□□□□□ -1.2
VPS50-214ENST00000477935 ANGEL1Q9UNK9 670 aaKnown RBP7.56□□□□□ -1.2
VPS50-214ENST00000477935 RUSC2Q8N2Y8 1516 aa7.56□□□□□ -1.2
VPS50-214ENST00000477935 MAP3K4Q9Y6R4 1608 aa7.56□□□□□ -1.2
VPS50-214ENST00000477935 CD109Q6YHK3 1445 aa7.55□□□□□ -1.2
VPS50-214ENST00000477935 ITIH2P19823 946 aa7.55□□□□□ -1.2
VPS50-214ENST00000477935 YARSP54577 528 aaKnown RBP7.55□□□□□ -1.2
VPS50-214ENST00000477935 HDLBPQ00341 1268 aaKnown RBP7.55□□□□□ -1.2
VPS50-214ENST00000477935 IFI16Q16666 785 aaKnown RBP7.55□□□□□ -1.2
VPS50-214ENST00000477935 ZNF746Q6NUN9 644 aaPredicted RBP7.55□□□□□ -1.2
VPS50-214ENST00000477935 SLFN12Q8IYM2 578 aa7.55□□□□□ -1.2
VPS50-214ENST00000477935 KLHL3Q9UH77 587 aa7.55□□□□□ -1.2
VPS50-214ENST00000477935 PLAGL2Q9UPG8 496 aa7.55□□□□□ -1.2
VPS50-214ENST00000477935 PCDHB14Q9Y5E9 798 aa7.55□□□□□ -1.2
VPS50-214ENST00000477935 MAGI3Q5TCQ9 1506 aa7.55□□□□□ -1.2
VPS50-214ENST00000477935 PHLDB1Q86UU1 1377 aa7.55□□□□□ -1.2
VPS50-214ENST00000477935 CNTNAP4Q9C0A0 1308 aa7.54□□□□□ -1.2
VPS50-214ENST00000477935 DNAJA2O60884 412 aa7.54□□□□□ -1.2
VPS50-214ENST00000477935 ATE1O95260 518 aa7.54□□□□□ -1.2
VPS50-214ENST00000477935 GP2P55259 537 aaKnown RBP7.54□□□□□ -1.2
VPS50-214ENST00000477935 CDH24Q86UP0 819 aa7.54□□□□□ -1.2
VPS50-214ENST00000477935 SLITRK4Q8IW52 837 aa7.54□□□□□ -1.2
VPS50-214ENST00000477935 NKD1Q969G9 470 aa7.54□□□□□ -1.2
VPS50-214ENST00000477935 ARID4BQ4LE39 1312 aaPredicted RBP7.53□□□□□ -1.2
VPS50-214ENST00000477935 KDM5BQ9UGL1 1544 aa7.53□□□□□ -1.2
VPS50-214ENST00000477935 GNAT3A8MTJ3 354 aa7.53□□□□□ -1.2
VPS50-214ENST00000477935 CHURC1-FNTBB4DL54 471 aa7.53□□□□□ -1.2
VPS50-214ENST00000477935 SFRP5Q5T4F7 317 aa7.53□□□□□ -1.2
VPS50-214ENST00000477935 C9orf131Q5VYM1 1079 aa7.53□□□□□ -1.2
VPS50-214ENST00000477935 NFXL1Q6ZNB6 911 aa7.53□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms