RNA–Protein interactions for RNA: ENST00000477573.1

RTFDC1-207, Transcript of Protein RTF2 homolog, humanhuman

TSL 1 (best)

Gene RTFDC1, Length 2,193 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTFDC1-207ENST00000477573 SYT1P21579 422 aa14.28□□□□□ -0.12
RTFDC1-207ENST00000477573 SIK1P57059 783 aa14.28□□□□□ -0.12
RTFDC1-207ENST00000477573 ROR2Q01974 943 aaKnown RBP14.28□□□□□ -0.12
RTFDC1-207ENST00000477573 CASP8Q14790 479 aa14.28□□□□□ -0.12
RTFDC1-207ENST00000477573 FAM98CQ17RN3 349 aaKnown RBP14.28□□□□□ -0.12
RTFDC1-207ENST00000477573 FNBP4Q8N3X1 1017 aaPredicted RBP14.28□□□□□ -0.12
RTFDC1-207ENST00000477573 PAGR1Q9BTK6 254 aa14.28□□□□□ -0.12
RTFDC1-207ENST00000477573 CCDC87Q9NVE4 849 aa14.28□□□□□ -0.12
RTFDC1-207ENST00000477573 EYA2O00167 538 aa14.27□□□□□ -0.12
RTFDC1-207ENST00000477573 RNF40O75150 1001 aa14.27□□□□□ -0.12
RTFDC1-207ENST00000477573 SKAP2O75563 359 aaPredicted RBP14.27□□□□□ -0.12
RTFDC1-207ENST00000477573 PRPF6O94906 941 aaKnown RBP14.27□□□□□ -0.12
RTFDC1-207ENST00000477573 NLRP10Q86W26 655 aa14.27□□□□□ -0.12
RTFDC1-207ENST00000477573 CCDC170Q8IYT3 715 aa14.27□□□□□ -0.12
RTFDC1-207ENST00000477573 AGAP3Q96P47 875 aa14.27□□□□□ -0.12
RTFDC1-207ENST00000477573 ALS2CR12Q96Q35 445 aa14.27□□□□□ -0.12
RTFDC1-207ENST00000477573 TSGA10Q9BZW7 698 aa14.27□□□□□ -0.12
RTFDC1-207ENST00000477573 VCPKMTQ9H867 229 aa14.27□□□□□ -0.12
RTFDC1-207ENST00000477573 TLR7Q9NYK1 1049 aaKnown RBP14.27□□□□□ -0.12
RTFDC1-207ENST00000477573 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP14.27□□□□□ -0.12
RTFDC1-207ENST00000477573 TNKS1BP1Q9C0C2 1729 aaKnown RBP14.27□□□□□ -0.12
RTFDC1-207ENST00000477573 ANKRD36CQ5JPF3 1778 aa14.27□□□□□ -0.13
RTFDC1-207ENST00000477573 BCL9LQ86UU0 1499 aa14.27□□□□□ -0.13
RTFDC1-207ENST00000477573 FERP16591 822 aa14.27□□□□□ -0.13
RTFDC1-207ENST00000477573 SFPQP23246 707 aaKnown RBP eCLIP14.27□□□□□ -0.13
RTFDC1-207ENST00000477573 CCDC40Q4G0X9 1142 aa14.27□□□□□ -0.13
RTFDC1-207ENST00000477573 ARHGAP22Q7Z5H3 698 aa14.27□□□□□ -0.13
RTFDC1-207ENST00000477573 ZFAND2BQ8WV99 257 aa14.27□□□□□ -0.13
RTFDC1-207ENST00000477573 BICD1Q96G01 975 aa14.27□□□□□ -0.13
RTFDC1-207ENST00000477573 EPC1Q9H2F5 836 aa14.27□□□□□ -0.13
RTFDC1-207ENST00000477573 BOLA2Q9H3K6 86 aa14.27□□□□□ -0.13
RTFDC1-207ENST00000477573 CLSTN2Q9H4D0 955 aa14.27□□□□□ -0.13
RTFDC1-207ENST00000477573 DBNLQ9UJU6 430 aaKnown RBP14.27□□□□□ -0.13
RTFDC1-207ENST00000477573 CORO1CQ9ULV4 474 aaPredicted RBP14.27□□□□□ -0.13
RTFDC1-207ENST00000477573 PALLDQ8WX93 1383 aa14.26□□□□□ -0.13
RTFDC1-207ENST00000477573 ENO4A6NNW6 628 aa14.26□□□□□ -0.13
RTFDC1-207ENST00000477573 IFFO1Q0D2I5 559 aa14.26□□□□□ -0.13
RTFDC1-207ENST00000477573 HLFQ16534 295 aa14.26□□□□□ -0.13
RTFDC1-207ENST00000477573 MIS18BP1Q6P0N0 1132 aa14.26□□□□□ -0.13
RTFDC1-207ENST00000477573 NUP133Q8WUM0 1156 aa14.26□□□□□ -0.13
RTFDC1-207ENST00000477573 C17orf50Q8WW18 174 aa14.26□□□□□ -0.13
RTFDC1-207ENST00000477573 FAM89AQ96GI7 184 aa14.26□□□□□ -0.13
RTFDC1-207ENST00000477573 PCDHGC5Q9Y5F6 944 aa14.26□□□□□ -0.13
RTFDC1-207ENST00000477573 SPDYE3A6NKU9 549 aa14.26□□□□□ -0.13
RTFDC1-207ENST00000477573 ZSCAN12O43309 604 aa14.26□□□□□ -0.13
RTFDC1-207ENST00000477573 MYL1P05976 194 aa14.26□□□□□ -0.13
RTFDC1-207ENST00000477573 HSPA4P34932 840 aa14.26□□□□□ -0.13
RTFDC1-207ENST00000477573 ATP2B2Q01814 1243 aa14.26□□□□□ -0.13
RTFDC1-207ENST00000477573 IFIT5Q13325 482 aaKnown RBP14.26□□□□□ -0.13
RTFDC1-207ENST00000477573 ACBD5Q5T8D3 534 aaPredicted RBP14.26□□□□□ -0.13
RTFDC1-207ENST00000477573 ATG9AQ7Z3C6 839 aa14.26□□□□□ -0.13
RTFDC1-207ENST00000477573 CEP57Q86XR8 500 aa14.26□□□□□ -0.13
RTFDC1-207ENST00000477573 DTNBP1Q96EV8 351 aa14.26□□□□□ -0.13
RTFDC1-207ENST00000477573 EPAS1Q99814 870 aa14.26□□□□□ -0.13
RTFDC1-207ENST00000477573 FSD1Q9BTV5 496 aa14.26□□□□□ -0.13
RTFDC1-207ENST00000477573 TRIM7Q9C029 511 aa14.26□□□□□ -0.13
RTFDC1-207ENST00000477573 CICQ96RK0 1608 aaPredicted RBP14.25□□□□□ -0.13
RTFDC1-207ENST00000477573 NUP98P52948 1817 aa14.25□□□□□ -0.13
RTFDC1-207ENST00000477573 FRMD3A2A2Y4 597 aa14.25□□□□□ -0.13
RTFDC1-207ENST00000477573 GOLGA6L10A6NI86 522 aa14.25□□□□□ -0.13
RTFDC1-207ENST00000477573 CSF1RP07333 972 aa14.25□□□□□ -0.13
RTFDC1-207ENST00000477573 CRKLP46109 303 aaKnown RBP14.25□□□□□ -0.13
RTFDC1-207ENST00000477573 IRAK1P51617 712 aa14.25□□□□□ -0.13
RTFDC1-207ENST00000477573 EXOC8Q8IYI6 725 aa14.25□□□□□ -0.13
RTFDC1-207ENST00000477573 RBM17Q96I25 401 aaKnown RBP14.25□□□□□ -0.13
RTFDC1-207ENST00000477573 DNAJC25Q9H1X3 360 aa14.25□□□□□ -0.13
RTFDC1-207ENST00000477573 TRMT112Q9UI30 125 aaKnown RBP14.25□□□□□ -0.13
RTFDC1-207ENST00000477573 PAX3P23760 479 aa14.24□□□□□ -0.13
RTFDC1-207ENST00000477573 RANBP1P43487 201 aa14.24□□□□□ -0.13
RTFDC1-207ENST00000477573 PAPOLAP51003 745 aaKnown RBP14.24□□□□□ -0.13
RTFDC1-207ENST00000477573 ACTN3Q08043 901 aaPredicted RBP14.24□□□□□ -0.13
RTFDC1-207ENST00000477573 TMED1Q13445 227 aa14.24□□□□□ -0.13
RTFDC1-207ENST00000477573 RRP12Q5JTH9 1297 aaKnown RBP14.24□□□□□ -0.13
RTFDC1-207ENST00000477573 INTS5Q6P9B9 1019 aaKnown RBP14.24□□□□□ -0.13
RTFDC1-207ENST00000477573 ATL2Q8NHH9 583 aa14.24□□□□□ -0.13
RTFDC1-207ENST00000477573 BCAS4Q8TDM0 211 aa14.24□□□□□ -0.13
RTFDC1-207ENST00000477573 CCDC47Q96A33 483 aaKnown RBP14.24□□□□□ -0.13
RTFDC1-207ENST00000477573 LSG1Q9H089 658 aaKnown RBP14.24□□□□□ -0.13
RTFDC1-207ENST00000477573 CEP126Q9P2H0 1117 aa14.24□□□□□ -0.13
RTFDC1-207ENST00000477573 GGA2Q9UJY4 613 aa14.24□□□□□ -0.13
RTFDC1-207ENST00000477573 USP21Q9UK80 565 aa14.24□□□□□ -0.13
RTFDC1-207ENST00000477573 EIF3HO15372 352 aaKnown RBP eCLIP14.24□□□□□ -0.13
RTFDC1-207ENST00000477573 PPFIA3O75145 1194 aa14.24□□□□□ -0.13
RTFDC1-207ENST00000477573 DEUP1Q05D60 604 aa14.24□□□□□ -0.13
RTFDC1-207ENST00000477573 PPFIA1Q13136 1202 aa14.24□□□□□ -0.13
RTFDC1-207ENST00000477573 TUBB2AQ13885 445 aa14.24□□□□□ -0.13
RTFDC1-207ENST00000477573 THEMIS2Q5TEJ8 643 aa14.24□□□□□ -0.13
RTFDC1-207ENST00000477573 MTHFD1LQ6UB35 978 aa14.24□□□□□ -0.13
RTFDC1-207ENST00000477573 PARP9Q8IXQ6 854 aa14.24□□□□□ -0.13
RTFDC1-207ENST00000477573 TRIM58Q8NG06 486 aa14.24□□□□□ -0.13
RTFDC1-207ENST00000477573 NEUROD6Q96NK8 337 aa14.24□□□□□ -0.13
RTFDC1-207ENST00000477573 DBNDD2Q9BQY9 259 aa14.24□□□□□ -0.13
RTFDC1-207ENST00000477573 TUBB2BQ9BVA1 445 aa14.24□□□□□ -0.13
RTFDC1-207ENST00000477573 RFX7Q2KHR2 1363 aa14.24□□□□□ -0.13
RTFDC1-207ENST00000477573 SMNDC1O75940 238 aaKnown RBP eCLIP14.23□□□□□ -0.13
RTFDC1-207ENST00000477573 LRRC23Q53EV4 343 aaPredicted RBP14.23□□□□□ -0.13
RTFDC1-207ENST00000477573 FAM163AQ96GL9 167 aaPredicted RBP14.23□□□□□ -0.13
RTFDC1-207ENST00000477573 UBA5Q9GZZ9 404 aa14.23□□□□□ -0.13
RTFDC1-207ENST00000477573 IL25Q9H293 177 aa14.23□□□□□ -0.13
RTFDC1-207ENST00000477573 GOLGA6L7A0A1B0GV03 622 aa14.23□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms