RNA–Protein interactions for RNA: ENST00000475873.2

USP4-209, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 536 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-209ENST00000475873 ERMP1Q7Z2K6 904 aa6.16□□□□□ -1.42
USP4-209ENST00000475873 GADD45GIP1Q8TAE8 222 aaPredicted RBP6.16□□□□□ -1.42
USP4-209ENST00000475873 LENG1Q96BZ8 264 aaPredicted RBP6.16□□□□□ -1.42
USP4-209ENST00000475873 PAGR1Q9BTK6 254 aa6.16□□□□□ -1.42
USP4-209ENST00000475873 CERS4Q9HA82 394 aa6.16□□□□□ -1.42
USP4-209ENST00000475873 MBIPQ9NS73 344 aa6.16□□□□□ -1.42
USP4-209ENST00000475873 USP24Q9UPU5 2620 aa6.16□□□□□ -1.42
USP4-209ENST00000475873 MYBBP1AQ9BQG0 1328 aaKnown RBP6.16□□□□□ -1.42
USP4-209ENST00000475873 MAPK8IP3Q9UPT6 1336 aa6.16□□□□□ -1.42
USP4-209ENST00000475873 CEP250Q9BV73 2442 aa6.16□□□□□ -1.42
USP4-209ENST00000475873 SEPT4O43236 478 aa6.15□□□□□ -1.42
USP4-209ENST00000475873 NEFMP07197 916 aa6.15□□□□□ -1.42
USP4-209ENST00000475873 ALADP13716 330 aa6.15□□□□□ -1.42
USP4-209ENST00000475873 PTPREP23469 700 aa6.15□□□□□ -1.42
USP4-209ENST00000475873 PRDX5P30044 214 aa6.15□□□□□ -1.42
USP4-209ENST00000475873 IRX5P78411 483 aaPredicted RBP6.15□□□□□ -1.42
USP4-209ENST00000475873 IRX3P78415 501 aaPredicted RBP6.15□□□□□ -1.42
USP4-209ENST00000475873 IFIT5Q13325 482 aaKnown RBP6.15□□□□□ -1.42
USP4-209ENST00000475873 MTMR2Q13614 643 aa6.15□□□□□ -1.42
USP4-209ENST00000475873 GRB14Q14449 540 aa6.15□□□□□ -1.42
USP4-209ENST00000475873 CSPP1Q1MSJ5 1256 aa6.15□□□□□ -1.42
USP4-209ENST00000475873 SAMD1Q6SPF0 538 aaPredicted RBP6.15□□□□□ -1.42
USP4-209ENST00000475873 LDHAL6AQ6ZMR3 332 aa6.15□□□□□ -1.42
USP4-209ENST00000475873 ASCL5Q7RTU5 278 aa6.15□□□□□ -1.42
USP4-209ENST00000475873 PIAS4Q8N2W9 510 aaPredicted RBP6.15□□□□□ -1.42
USP4-209ENST00000475873 TBC1D22AQ8WUA7 517 aa6.15□□□□□ -1.42
USP4-209ENST00000475873 IDI2Q9BXS1 227 aa6.15□□□□□ -1.42
USP4-209ENST00000475873 USP40Q9NVE5 1235 aa6.15□□□□□ -1.42
USP4-209ENST00000475873 LRRFIP2Q9Y608 721 aaKnown RBP6.15□□□□□ -1.42
USP4-209ENST00000475873 GAKO14976 1311 aa6.15□□□□□ -1.43
USP4-209ENST00000475873 UMODL1Q5DID0 1318 aa6.15□□□□□ -1.43
USP4-209ENST00000475873 ZNF521Q96K83 1311 aa6.15□□□□□ -1.43
USP4-209ENST00000475873 SIPA1L1O43166 1804 aa6.15□□□□□ -1.43
USP4-209ENST00000475873 GPR179Q6PRD1 2367 aa6.14□□□□□ -1.43
USP4-209ENST00000475873 ZNF236Q9UL36 1845 aa6.14□□□□□ -1.43
USP4-209ENST00000475873 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP6.14□□□□□ -1.43
USP4-209ENST00000475873 SLC15A5A6NIM6 579 aa6.14□□□□□ -1.43
USP4-209ENST00000475873 RBAK-RBAKDNI3L0D1 243 aa6.14□□□□□ -1.43
USP4-209ENST00000475873 PGK1P00558 417 aa6.14□□□□□ -1.43
USP4-209ENST00000475873 CA3P07451 260 aa6.14□□□□□ -1.43
USP4-209ENST00000475873 SSTR3P32745 418 aaPredicted RBP6.14□□□□□ -1.43
USP4-209ENST00000475873 PTPN5P54829 565 aa6.14□□□□□ -1.43
USP4-209ENST00000475873 ATP2B2Q01814 1243 aa6.14□□□□□ -1.43
USP4-209ENST00000475873 PABPC4Q13310 644 aaKnown RBP eCLIP6.14□□□□□ -1.43
USP4-209ENST00000475873 GRB10Q13322 594 aa6.14□□□□□ -1.43
USP4-209ENST00000475873 PPIGQ13427 754 aaKnown RBP eCLIP6.14□□□□□ -1.434e-10■■□□□ 12.4
USP4-209ENST00000475873 LMBR1LQ6UX01 489 aa6.14□□□□□ -1.43
USP4-209ENST00000475873 OTOP2Q7RTS6 562 aa6.14□□□□□ -1.43
USP4-209ENST00000475873 VGLL2Q8N8G2 317 aa6.14□□□□□ -1.43
USP4-209ENST00000475873 C8orf58Q8NAV2 365 aa6.14□□□□□ -1.43
USP4-209ENST00000475873 COL26A1Q96A83 441 aa6.14□□□□□ -1.43
USP4-209ENST00000475873 TOX2Q96NM4 488 aa6.14□□□□□ -1.43
USP4-209ENST00000475873 CNTNAP3BQ96NU0 1288 aa6.14□□□□□ -1.43
USP4-209ENST00000475873 CNTNAP3Q9BZ76 1288 aa6.14□□□□□ -1.43
USP4-209ENST00000475873 PPP1R12CQ9BZL4 782 aa6.14□□□□□ -1.43
USP4-209ENST00000475873 SUGT1Q9Y2Z0 365 aa6.14□□□□□ -1.43
USP4-209ENST00000475873 MAST3O60307 1309 aa6.14□□□□□ -1.43
USP4-209ENST00000475873 ZNF292O60281 2723 aa6.14□□□□□ -1.43
USP4-209ENST00000475873 MYO7AQ13402 2215 aa6.14□□□□□ -1.43
USP4-209ENST00000475873 MYH2Q9UKX2 1941 aa6.13□□□□□ -1.43
USP4-209ENST00000475873 SOWAHBA6NEL2 793 aa6.13□□□□□ -1.43
USP4-209ENST00000475873 COBLO75128 1261 aa6.13□□□□□ -1.43
USP4-209ENST00000475873 ENTPD3O75355 529 aa6.13□□□□□ -1.43
USP4-209ENST00000475873 ZNF853P0CG23 659 aa6.13□□□□□ -1.43
USP4-209ENST00000475873 SLC5A1P13866 664 aa6.13□□□□□ -1.43
USP4-209ENST00000475873 CYP2C18P33260 490 aa6.13□□□□□ -1.43
USP4-209ENST00000475873 CAP2P40123 477 aa6.13□□□□□ -1.43
USP4-209ENST00000475873 CDK7P50613 346 aa6.13□□□□□ -1.43
USP4-209ENST00000475873 TAP1Q03518 808 aa6.13□□□□□ -1.43
USP4-209ENST00000475873 NEUROD2Q15784 382 aa6.13□□□□□ -1.43
USP4-209ENST00000475873 PSRC1Q6PGN9 363 aaPredicted RBP6.13□□□□□ -1.43
USP4-209ENST00000475873 TSPYL6Q8N831 410 aa6.13□□□□□ -1.43
USP4-209ENST00000475873 UBE2ZQ9H832 354 aaPredicted RBP6.13□□□□□ -1.43
USP4-209ENST00000475873 IL23AQ9NPF7 189 aa6.13□□□□□ -1.43
USP4-209ENST00000475873 CNNM1Q9NRU3 951 aa6.13□□□□□ -1.43
USP4-209ENST00000475873 BTBD7Q9P203 1132 aa6.13□□□□□ -1.43
USP4-209ENST00000475873 RALYQ9UKM9 306 aaKnown RBP6.13□□□□□ -1.43
USP4-209ENST00000475873 TIMELESSQ9UNS1 1208 aa6.13□□□□□ -1.43
USP4-209ENST00000475873 PCDHA11Q9Y5I1 949 aa6.13□□□□□ -1.43
USP4-209ENST00000475873 MYH13Q9UKX3 1938 aa6.13□□□□□ -1.43
USP4-209ENST00000475873 ANKRD11Q6UB99 2663 aaPredicted RBP6.12□□□□□ -1.43
USP4-209ENST00000475873 MYADML2A6NDP7 307 aa6.12□□□□□ -1.43
USP4-209ENST00000475873 GRXCR2A6NFK2 248 aa6.12□□□□□ -1.43
USP4-209ENST00000475873 C19orf67A6NJJ6 358 aa6.12□□□□□ -1.43
USP4-209ENST00000475873 DCDC2CA8MYV0 355 aa6.12□□□□□ -1.43
USP4-209ENST00000475873 GTPBP6O43824 516 aaPredicted RBP6.12□□□□□ -1.43
USP4-209ENST00000475873 TBC1D12O60347 775 aa6.12□□□□□ -1.43
USP4-209ENST00000475873 ADAMTS4O75173 837 aa6.12□□□□□ -1.43
USP4-209ENST00000475873 DDX58O95786 925 aaKnown RBP6.12□□□□□ -1.43
USP4-209ENST00000475873 TAL1P17542 331 aaPredicted RBP6.12□□□□□ -1.43
USP4-209ENST00000475873 ID4P47928 161 aa6.12□□□□□ -1.43
USP4-209ENST00000475873 BACE1P56817 501 aa6.12□□□□□ -1.43
USP4-209ENST00000475873 ZP2Q05996 745 aa6.12□□□□□ -1.43
USP4-209ENST00000475873 PTPRSQ13332 1948 aa6.12□□□□□ -1.43
USP4-209ENST00000475873 LEXMQ3ZCV2 418 aa6.12□□□□□ -1.43
USP4-209ENST00000475873 OLFML2BQ68BL8 750 aa6.12□□□□□ -1.43
USP4-209ENST00000475873 CCSAPQ6IQ19 270 aaPredicted RBP6.12□□□□□ -1.43
USP4-209ENST00000475873 ZSCAN29Q8IWY8 852 aaPredicted RBP6.12□□□□□ -1.43
USP4-209ENST00000475873 ARNTL2Q8WYA1 636 aa6.12□□□□□ -1.43
USP4-209ENST00000475873 WDR18Q9BV38 432 aa6.12□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms