RNA–Protein interactions for RNA: ENST00000474655.6

SYNE1-222, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 1,798 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-222ENST00000474655 FKBP1AP62942 108 aaKnown RBP14.11□□□□□ -0.15
SYNE1-222ENST00000474655 EZH2Q15910 746 aaKnown RBP14.11□□□□□ -0.15
SYNE1-222ENST00000474655 RILPL1Q5EBL4 403 aa14.11□□□□□ -0.15
SYNE1-222ENST00000474655 C2CD5Q86YS7 1000 aa14.11□□□□□ -0.15
SYNE1-222ENST00000474655 ZNF444Q8N0Y2 327 aaPredicted RBP14.11□□□□□ -0.15
SYNE1-222ENST00000474655 SRBD1Q8N5C6 995 aaKnown RBP14.11□□□□□ -0.15
SYNE1-222ENST00000474655 FAM200AQ8TCP9 573 aa14.11□□□□□ -0.15
SYNE1-222ENST00000474655 MRIQ9BWK5 157 aa14.11□□□□□ -0.15
SYNE1-222ENST00000474655 BAZ2BQ9UIF8 2168 aaKnown RBP14.11□□□□□ -0.15
SYNE1-222ENST00000474655 WDHD1O75717 1129 aaPredicted RBP14.11□□□□□ -0.15
SYNE1-222ENST00000474655 KIF5BP33176 963 aa14.11□□□□□ -0.15
SYNE1-222ENST00000474655 NOVP48745 357 aa14.11□□□□□ -0.15
SYNE1-222ENST00000474655 CDK8P49336 464 aa14.11□□□□□ -0.15
SYNE1-222ENST00000474655 NDUFA8P51970 172 aa14.11□□□□□ -0.15
SYNE1-222ENST00000474655 HHIPL2Q6UWX4 724 aa14.11□□□□□ -0.15
SYNE1-222ENST00000474655 C7orf43Q8WVR3 580 aa14.11□□□□□ -0.15
SYNE1-222ENST00000474655 V9GY48 417 aaPredicted RBP14.11□□□□□ -0.15
SYNE1-222ENST00000474655 PSME4Q14997 1843 aa14.1□□□□□ -0.15
SYNE1-222ENST00000474655 ADAMTSL1Q8N6G6 1762 aa14.1□□□□□ -0.15
SYNE1-222ENST00000474655 TSPY3P0CV98 308 aa14.1□□□□□ -0.15
SYNE1-222ENST00000474655 TSPY8P0CW00 308 aa14.1□□□□□ -0.15
SYNE1-222ENST00000474655 SASS6Q6UVJ0 657 aa14.1□□□□□ -0.15
SYNE1-222ENST00000474655 PNMA1Q8ND90 353 aa14.1□□□□□ -0.15
SYNE1-222ENST00000474655 ZNF622Q969S3 477 aaKnown RBP eCLIP14.1□□□□□ -0.15
SYNE1-222ENST00000474655 KAT14Q9H8E8 782 aa14.1□□□□□ -0.15
SYNE1-222ENST00000474655 STK32BQ9NY57 414 aa14.1□□□□□ -0.15
SYNE1-222ENST00000474655 SAP30BPQ9UHR5 308 aaKnown RBP14.1□□□□□ -0.15
SYNE1-222ENST00000474655 HPSEQ9Y251 543 aa14.1□□□□□ -0.15
SYNE1-222ENST00000474655 A0A1B0GVL5 298 aa14.09□□□□□ -0.15
SYNE1-222ENST00000474655 EN1Q05925 392 aaPredicted RBP14.09□□□□□ -0.15
SYNE1-222ENST00000474655 GRM4Q14833 912 aa14.09□□□□□ -0.15
SYNE1-222ENST00000474655 NPY5RQ15761 445 aa14.09□□□□□ -0.15
SYNE1-222ENST00000474655 SLC4A8Q2Y0W8 1093 aa14.09□□□□□ -0.15
SYNE1-222ENST00000474655 SLC44A5Q8NCS7 719 aa14.09□□□□□ -0.15
SYNE1-222ENST00000474655 NEDD1Q8NHV4 660 aa14.09□□□□□ -0.15
SYNE1-222ENST00000474655 CNKSR1Q969H4 720 aa14.09□□□□□ -0.15
SYNE1-222ENST00000474655 TIGD1Q96MW7 591 aa14.09□□□□□ -0.15
SYNE1-222ENST00000474655 PLIN4Q96Q06 1357 aa14.09□□□□□ -0.15
SYNE1-222ENST00000474655 ESPNB1AK53 854 aa14.09□□□□□ -0.15
SYNE1-222ENST00000474655 CUTAO60888 179 aa14.09□□□□□ -0.15
SYNE1-222ENST00000474655 GABPAQ06546 454 aa14.09□□□□□ -0.15
SYNE1-222ENST00000474655 NR5A1Q13285 461 aa14.09□□□□□ -0.15
SYNE1-222ENST00000474655 PFKFB3Q16875 520 aaPredicted RBP14.09□□□□□ -0.15
SYNE1-222ENST00000474655 DOK7Q18PE1 504 aa14.09□□□□□ -0.15
SYNE1-222ENST00000474655 ANO6Q4KMQ2 910 aa14.09□□□□□ -0.15
SYNE1-222ENST00000474655 OXER1Q8TDS5 423 aa14.09□□□□□ -0.15
SYNE1-222ENST00000474655 TNFRSF25Q93038 417 aa14.09□□□□□ -0.15
SYNE1-222ENST00000474655 VPS54Q9P1Q0 977 aa14.09□□□□□ -0.15
SYNE1-222ENST00000474655 TTF2Q9UNY4 1162 aaKnown RBP14.09□□□□□ -0.15
SYNE1-222ENST00000474655 GREB1LQ9C091 1923 aaPredicted RBP14.08□□□□□ -0.16
SYNE1-222ENST00000474655 USP17L3A6NCW0 530 aa14.08□□□□□ -0.16
SYNE1-222ENST00000474655 USP17L4A6NCW7 530 aa14.08□□□□□ -0.16
SYNE1-222ENST00000474655 SCG2P13521 617 aa14.08□□□□□ -0.16
SYNE1-222ENST00000474655 PFKFB1P16118 471 aa14.08□□□□□ -0.16
SYNE1-222ENST00000474655 MARCKSP29966 332 aaPredicted RBP14.08□□□□□ -0.16
SYNE1-222ENST00000474655 KRT2P35908 639 aa14.08□□□□□ -0.16
SYNE1-222ENST00000474655 GNAQP50148 359 aa14.08□□□□□ -0.16
SYNE1-222ENST00000474655 RESP18Q5W5W9 173 aa14.08□□□□□ -0.16
SYNE1-222ENST00000474655 CC2D2BQ6DHV5 1058 aa14.08□□□□□ -0.16
SYNE1-222ENST00000474655 SHC4Q6S5L8 630 aa14.08□□□□□ -0.16
SYNE1-222ENST00000474655 USP17L1Q7RTZ2 530 aa14.08□□□□□ -0.16
SYNE1-222ENST00000474655 RRAGDQ9NQL2 400 aaPredicted RBP14.08□□□□□ -0.16
SYNE1-222ENST00000474655 SH3GLB2Q9NR46 395 aa14.08□□□□□ -0.16
SYNE1-222ENST00000474655 MAD2L2Q9UI95 211 aa14.08□□□□□ -0.16
SYNE1-222ENST00000474655 C10orf71Q711Q0 1435 aa14.08□□□□□ -0.16
SYNE1-222ENST00000474655 MYO3BQ8WXR4 1341 aa14.07□□□□□ -0.16
SYNE1-222ENST00000474655 ZNF202O95125 648 aa14.07□□□□□ -0.16
SYNE1-222ENST00000474655 PTPREP23469 700 aa14.07□□□□□ -0.16
SYNE1-222ENST00000474655 HDLBPQ00341 1268 aaKnown RBP14.07□□□□□ -0.16
SYNE1-222ENST00000474655 STRIP1Q5VSL9 837 aa14.07□□□□□ -0.16
SYNE1-222ENST00000474655 FAM177A1Q8N128 213 aaPredicted RBP14.07□□□□□ -0.16
SYNE1-222ENST00000474655 TMEM47Q9BQJ4 181 aa14.07□□□□□ -0.16
SYNE1-222ENST00000474655 CBX8Q9HC52 389 aa14.07□□□□□ -0.16
SYNE1-222ENST00000474655 USP25Q9UHP3 1055 aa14.07□□□□□ -0.16
SYNE1-222ENST00000474655 PALM3A6NDB9 673 aaPredicted RBP14.06□□□□□ -0.16
SYNE1-222ENST00000474655 STX1AQ16623 288 aa14.06□□□□□ -0.16
SYNE1-222ENST00000474655 APOBEC3HQ6NTF7 200 aaKnown RBP14.06□□□□□ -0.16
SYNE1-222ENST00000474655 ELOA2Q8IYF1 753 aaPredicted RBP14.06□□□□□ -0.16
SYNE1-222ENST00000474655 KRI1Q8N9T8 703 aaKnown RBP14.06□□□□□ -0.16
SYNE1-222ENST00000474655 ZNF579Q8NAF0 562 aaKnown RBP14.06□□□□□ -0.16
SYNE1-222ENST00000474655 TEKT1Q969V4 418 aa14.06□□□□□ -0.16
SYNE1-222ENST00000474655 ZDHHC15Q96MV8 337 aa14.06□□□□□ -0.16
SYNE1-222ENST00000474655 CEP131Q9UPN4 1083 aa14.06□□□□□ -0.16
SYNE1-222ENST00000474655 KIF13BQ9NQT8 1826 aa14.06□□□□□ -0.16
SYNE1-222ENST00000474655 G3V3G9 751 aa14.06□□□□□ -0.16
SYNE1-222ENST00000474655 ADCY5O95622 1261 aa14.06□□□□□ -0.16
SYNE1-222ENST00000474655 SMARCA1P28370 1054 aa14.06□□□□□ -0.16
SYNE1-222ENST00000474655 CHRNA5P30532 468 aa14.06□□□□□ -0.16
SYNE1-222ENST00000474655 ZNF165P49910 485 aa14.06□□□□□ -0.16
SYNE1-222ENST00000474655 DACT2Q5SW24 774 aa14.06□□□□□ -0.16
SYNE1-222ENST00000474655 DCAF8Q5TAQ9 597 aa14.06□□□□□ -0.16
SYNE1-222ENST00000474655 ZSCAN30Q86W11 494 aa14.06□□□□□ -0.16
SYNE1-222ENST00000474655 LZTS2Q9BRK4 669 aa14.06□□□□□ -0.16
SYNE1-222ENST00000474655 SDF4Q9BRK5 362 aa14.06□□□□□ -0.16
SYNE1-222ENST00000474655 MXD3Q9BW11 206 aa14.06□□□□□ -0.16
SYNE1-222ENST00000474655 BRMS1Q9HCU9 246 aa14.06□□□□□ -0.16
SYNE1-222ENST00000474655 CABP5Q9NP86 173 aa14.06□□□□□ -0.16
SYNE1-222ENST00000474655 DDX4Q9NQI0 724 aaKnown RBP14.06□□□□□ -0.16
SYNE1-222ENST00000474655 KIAA1468Q9P260 1216 aa14.06□□□□□ -0.16
SYNE1-222ENST00000474655 FBXO2Q9UK22 296 aaPredicted RBP14.06□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms