RNA–Protein interactions for RNA: ENST00000472880.1

COL9A3-210, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 959 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-210ENST00000472880 NR2E3Q9Y5X4 410 aa23.92■■□□□ 1.42
COL9A3-210ENST00000472880 RPTORQ8N122 1335 aa23.91■■□□□ 1.42
COL9A3-210ENST00000472880 USP17L15C9J2P7 530 aa23.91■■□□□ 1.42
COL9A3-210ENST00000472880 USP17L13C9JLJ4 530 aa23.91■■□□□ 1.42
COL9A3-210ENST00000472880 USP17L11C9JVI0 530 aa23.91■■□□□ 1.42
COL9A3-210ENST00000472880 USP17L18D6R9N7 530 aa23.91■■□□□ 1.42
COL9A3-210ENST00000472880 USP17L22D6RA61 530 aa23.91■■□□□ 1.42
COL9A3-210ENST00000472880 USP17L17D6RBQ6 530 aa23.91■■□□□ 1.42
COL9A3-210ENST00000472880 USP17L19D6RCP7 530 aa23.91■■□□□ 1.42
COL9A3-210ENST00000472880 USP17L20D6RJB6 530 aa23.91■■□□□ 1.42
COL9A3-210ENST00000472880 USP17L24Q0WX57 530 aa23.91■■□□□ 1.42
COL9A3-210ENST00000472880 CHRDL2Q6WN34 429 aa23.91■■□□□ 1.42
COL9A3-210ENST00000472880 TRIB2Q92519 343 aa23.91■■□□□ 1.42
COL9A3-210ENST00000472880 KIAA1683Q9H0B3 1180 aa23.91■■□□□ 1.42
COL9A3-210ENST00000472880 CWC22Q9HCG8 908 aaKnown RBP23.91■■□□□ 1.42
COL9A3-210ENST00000472880 PAG1Q9NWQ8 432 aa23.91■■□□□ 1.42
COL9A3-210ENST00000472880 TCRBV5S4A2TA0A5A2 114 aa23.9■■□□□ 1.42
COL9A3-210ENST00000472880 FXR1P51114 621 aaKnown RBP eCLIP23.9■■□□□ 1.42
COL9A3-210ENST00000472880 TRIM32Q13049 653 aa23.9■■□□□ 1.42
COL9A3-210ENST00000472880 LCORLQ8N3X6 602 aa23.9■■□□□ 1.42
COL9A3-210ENST00000472880 SDR42E1Q8WUS8 393 aa23.9■■□□□ 1.42
COL9A3-210ENST00000472880 EDC3Q96F86 508 aaKnown RBP23.9■■□□□ 1.42
COL9A3-210ENST00000472880 VCAM1P19320 739 aa23.89■■□□□ 1.41
COL9A3-210ENST00000472880 GABPAQ06546 454 aa23.89■■□□□ 1.41
COL9A3-210ENST00000472880 ACER1Q8TDN7 264 aa23.89■■□□□ 1.41
COL9A3-210ENST00000472880 PORCNQ9H237 461 aa23.89■■□□□ 1.41
COL9A3-210ENST00000472880 BOLA2Q9H3K6 86 aa23.89■■□□□ 1.41
COL9A3-210ENST00000472880 MPHOSPH10O00566 681 aaKnown RBP23.88■■□□□ 1.41
COL9A3-210ENST00000472880 XRCC5P13010 732 aaKnown RBP23.88■■□□□ 1.41
COL9A3-210ENST00000472880 ATP5JP18859 108 aa23.88■■□□□ 1.41
COL9A3-210ENST00000472880 Q3C1V9 767 aa23.88■■□□□ 1.41
COL9A3-210ENST00000472880 GPR142Q7Z601 462 aa23.88■■□□□ 1.41
COL9A3-210ENST00000472880 TRMT44Q8IYL2 757 aaKnown RBP23.88■■□□□ 1.41
COL9A3-210ENST00000472880 ANKLE1Q8NAG6 615 aa23.88■■□□□ 1.41
COL9A3-210ENST00000472880 DDX24Q9GZR7 859 aaKnown RBP eCLIP23.88■■□□□ 1.41
COL9A3-210ENST00000472880 DCP1AQ9NPI6 582 aaPredicted RBP23.88■■□□□ 1.41
COL9A3-210ENST00000472880 RABGAP1Q9Y3P9 1069 aa23.88■■□□□ 1.41
COL9A3-210ENST00000472880 EVI5O60447 810 aa23.87■■□□□ 1.41
COL9A3-210ENST00000472880 PRKAR2AP13861 404 aaKnown RBP23.87■■□□□ 1.41
COL9A3-210ENST00000472880 ZKSCAN1P17029 563 aaPredicted RBP23.87■■□□□ 1.41
COL9A3-210ENST00000472880 RGS2P41220 211 aa23.87■■□□□ 1.41
COL9A3-210ENST00000472880 CCNA1P78396 465 aa23.87■■□□□ 1.41
COL9A3-210ENST00000472880 SEPT2Q15019 361 aa23.87■■□□□ 1.41
COL9A3-210ENST00000472880 CATSPERGQ6ZRH7 1159 aa23.87■■□□□ 1.41
COL9A3-210ENST00000472880 NECAB2Q7Z6G3 386 aa23.87■■□□□ 1.41
COL9A3-210ENST00000472880 PLEKHH3Q7Z736 793 aa23.87■■□□□ 1.41
COL9A3-210ENST00000472880 PAWRQ96IZ0 340 aaKnown RBP23.87■■□□□ 1.41
COL9A3-210ENST00000472880 ARMT1Q9H993 441 aa23.87■■□□□ 1.41
COL9A3-210ENST00000472880 CEP290O15078 2479 aa23.87■■□□□ 1.41
COL9A3-210ENST00000472880 MBD4O95243 580 aa23.86■■□□□ 1.41
COL9A3-210ENST00000472880 GUCY1A2P33402 732 aa23.86■■□□□ 1.41
COL9A3-210ENST00000472880 ADD2P35612 726 aa23.86■■□□□ 1.41
COL9A3-210ENST00000472880 POTEEQ6S8J3 1075 aa23.86■■□□□ 1.41
COL9A3-210ENST00000472880 APBA2Q99767 749 aa23.86■■□□□ 1.41
COL9A3-210ENST00000472880 RPAP3Q9H6T3 665 aaPredicted RBP23.86■■□□□ 1.41
COL9A3-210ENST00000472880 GLRX3O76003 335 aaKnown RBP23.85■■□□□ 1.41
COL9A3-210ENST00000472880 EVX2Q03828 476 aa23.85■■□□□ 1.41
COL9A3-210ENST00000472880 MAP3K21Q5TCX8 1036 aa23.85■■□□□ 1.41
COL9A3-210ENST00000472880 DIS3LQ8TF46 1054 aaKnown RBP23.85■■□□□ 1.41
COL9A3-210ENST00000472880 HAUS7Q99871 368 aa23.85■■□□□ 1.41
COL9A3-210ENST00000472880 LRRCC1Q9C099 1032 aa23.85■■□□□ 1.41
COL9A3-210ENST00000472880 SWAP70Q9UH65 585 aa23.85■■□□□ 1.41
COL9A3-210ENST00000472880 MYH8P13535 1937 aa23.84■■□□□ 1.41
COL9A3-210ENST00000472880 CNMDO75829 334 aa23.84■■□□□ 1.41
COL9A3-210ENST00000472880 CYP2D6P10635 497 aa23.84■■□□□ 1.41
COL9A3-210ENST00000472880 MORN1Q5T089 497 aa23.84■■□□□ 1.41
COL9A3-210ENST00000472880 C20orf194Q5TEA3 1177 aa23.84■■□□□ 1.41
COL9A3-210ENST00000472880 WDR78Q5VTH9 848 aa23.84■■□□□ 1.41
COL9A3-210ENST00000472880 USP6NLQ92738 828 aa23.84■■□□□ 1.41
COL9A3-210ENST00000472880 RBM27Q9P2N5 1060 aaKnown RBP23.84■■□□□ 1.41
COL9A3-210ENST00000472880 MYH7P12883 1935 aa23.84■■□□□ 1.41
COL9A3-210ENST00000472880 LBX2Q6XYB7 198 aa23.83■■□□□ 1.41
COL9A3-210ENST00000472880 TMEM179Q6ZVK1 233 aa23.83■■□□□ 1.41
COL9A3-210ENST00000472880 AMOTL1Q8IY63 956 aa23.83■■□□□ 1.41
COL9A3-210ENST00000472880 SLC44A5Q8NCS7 719 aa23.83■■□□□ 1.41
COL9A3-210ENST00000472880 ATP8A2Q9NTI2 1148 aa23.83■■□□□ 1.41
COL9A3-210ENST00000472880 SPDYE16A6NNV3 312 aaPredicted RBP23.82■■□□□ 1.4
COL9A3-210ENST00000472880 MAP2K5Q13163 448 aa23.82■■□□□ 1.4
COL9A3-210ENST00000472880 SLFNL1Q499Z3 407 aa23.82■■□□□ 1.4
COL9A3-210ENST00000472880 DDRGK1Q96HY6 314 aa23.82■■□□□ 1.4
COL9A3-210ENST00000472880 NBPF3Q9H094 633 aa23.82■■□□□ 1.4
COL9A3-210ENST00000472880 IVNS1ABPQ9Y6Y0 642 aa23.82■■□□□ 1.4
COL9A3-210ENST00000472880 ALPK3Q96L96 1907 aa23.81■■□□□ 1.4
COL9A3-210ENST00000472880 PRKAB2O43741 272 aa23.81■■□□□ 1.4
COL9A3-210ENST00000472880 CACNB2Q08289 660 aaPredicted RBP23.81■■□□□ 1.4
COL9A3-210ENST00000472880 CCL14Q16627 93 aa23.81■■□□□ 1.4
COL9A3-210ENST00000472880 DYNLL2Q96FJ2 89 aa23.81■■□□□ 1.4
COL9A3-210ENST00000472880 TANGO6Q9C0B7 1094 aa23.81■■□□□ 1.4
COL9A3-210ENST00000472880 BTBD7Q9P203 1132 aa23.81■■□□□ 1.4
COL9A3-210ENST00000472880 OGDHLQ9ULD0 1010 aa23.81■■□□□ 1.4
COL9A3-210ENST00000472880 BAZ2AQ9UIF9 1905 aaKnown RBP23.8■■□□□ 1.4
COL9A3-210ENST00000472880 A0A1W2PRG0 241 aa23.8■■□□□ 1.4
COL9A3-210ENST00000472880 SMARCA5O60264 1052 aaPredicted RBP23.8■■□□□ 1.4
COL9A3-210ENST00000472880 UBE3CQ15386 1083 aa23.8■■□□□ 1.4
COL9A3-210ENST00000472880 ZSCAN25Q6NSZ9 544 aa23.8■■□□□ 1.4
COL9A3-210ENST00000472880 C11orf49Q9H6J7 331 aa23.8■■□□□ 1.4
COL9A3-210ENST00000472880 SLC15A5A6NIM6 579 aa23.79■■□□□ 1.4
COL9A3-210ENST00000472880 SH2D4AQ9H788 454 aa23.79■■□□□ 1.4
COL9A3-210ENST00000472880 ARHGEF10LQ9HCE6 1279 aa23.79■■□□□ 1.4
COL9A3-210ENST00000472880 TRIOBPQ9H2D6 2365 aa23.78■■□□□ 1.4
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms