RNA–Protein interactions for RNA: ENST00000469852.5

COL9A3-209, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 901 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-209ENST00000469852 GRM1Q13255 1194 aa17.48■□□□□ 0.39
COL9A3-209ENST00000469852 DGKZQ13574 1117 aa17.48■□□□□ 0.39
COL9A3-209ENST00000469852 TSGA10IPQ3SY00 556 aa17.48■□□□□ 0.39
COL9A3-209ENST00000469852 RNF20Q5VTR2 975 aa17.48■□□□□ 0.39
COL9A3-209ENST00000469852 PAXIP1Q6ZW49 1069 aaPredicted RBP17.48■□□□□ 0.39
COL9A3-209ENST00000469852 CHST3Q7LGC8 479 aa17.48■□□□□ 0.39
COL9A3-209ENST00000469852 MB21D2Q8IYB1 491 aaPredicted RBP17.48■□□□□ 0.39
COL9A3-209ENST00000469852 ACER1Q8TDN7 264 aa17.48■□□□□ 0.39
COL9A3-209ENST00000469852 ESR2Q92731 530 aa17.48■□□□□ 0.39
COL9A3-209ENST00000469852 ZIC5Q96T25 663 aa17.48■□□□□ 0.39
COL9A3-209ENST00000469852 ZKSCAN3Q9BRR0 538 aa17.48■□□□□ 0.39
COL9A3-209ENST00000469852 ZSWIM5Q9P217 1185 aa17.48■□□□□ 0.39
COL9A3-209ENST00000469852 MYH4Q9Y623 1939 aa17.47■□□□□ 0.39
COL9A3-209ENST00000469852 A0A1W2PRG0 241 aa17.47■□□□□ 0.39
COL9A3-209ENST00000469852 USP17L5A8MUK1 530 aa17.47■□□□□ 0.39
COL9A3-209ENST00000469852 IRF6O14896 467 aa17.47■□□□□ 0.39
COL9A3-209ENST00000469852 ECE1P42892 770 aa17.47■□□□□ 0.39
COL9A3-209ENST00000469852 CTCFP49711 727 aaPredicted RBP17.47■□□□□ 0.39
COL9A3-209ENST00000469852 PPATQ06203 517 aa17.47■□□□□ 0.39
COL9A3-209ENST00000469852 SPRYD7Q5W111 196 aa17.47■□□□□ 0.39
COL9A3-209ENST00000469852 NCOA7Q8NI08 942 aa17.47■□□□□ 0.39
COL9A3-209ENST00000469852 CEP95Q96GE4 821 aa17.47■□□□□ 0.39
COL9A3-209ENST00000469852 KRT23Q9C075 422 aa17.47■□□□□ 0.39
COL9A3-209ENST00000469852 CNNM2Q9H8M5 875 aa17.47■□□□□ 0.39
COL9A3-209ENST00000469852 GINM1Q9NU53 330 aa17.47■□□□□ 0.39
COL9A3-209ENST00000469852 AFG3L2Q9Y4W6 797 aa17.47■□□□□ 0.39
COL9A3-209ENST00000469852 WDR33Q9C0J8 1336 aaKnown RBP17.47■□□□□ 0.39
COL9A3-209ENST00000469852 AOC2O75106 756 aa17.46■□□□□ 0.39
COL9A3-209ENST00000469852 CPA1P15085 419 aa17.46■□□□□ 0.39
COL9A3-209ENST00000469852 ZKSCAN1P17029 563 aaPredicted RBP17.46■□□□□ 0.39
COL9A3-209ENST00000469852 ICA1Q05084 483 aa17.46■□□□□ 0.39
COL9A3-209ENST00000469852 PPIL2Q13356 520 aa17.46■□□□□ 0.39
COL9A3-209ENST00000469852 CAPNS2Q96L46 248 aa17.46■□□□□ 0.39
COL9A3-209ENST00000469852 MTMR4Q9NYA4 1195 aa17.46■□□□□ 0.39
COL9A3-209ENST00000469852 TRIM75PA6NK02 468 aa17.45■□□□□ 0.38
COL9A3-209ENST00000469852 EEF2P13639 858 aaKnown RBP17.45■□□□□ 0.38
COL9A3-209ENST00000469852 MCCP23508 829 aa17.45■□□□□ 0.38
COL9A3-209ENST00000469852 TRDNQ13061 729 aa17.45■□□□□ 0.38
COL9A3-209ENST00000469852 SPP2Q13103 211 aa17.45■□□□□ 0.38
COL9A3-209ENST00000469852 RCSD1Q6JBY9 416 aa17.45■□□□□ 0.38
COL9A3-209ENST00000469852 RALYLQ86SE5 291 aaKnown RBP17.45■□□□□ 0.38
COL9A3-209ENST00000469852 JAKMIP1Q96N16 626 aaKnown RBP17.45■□□□□ 0.38
COL9A3-209ENST00000469852 NEK1Q96PY6 1258 aa17.45■□□□□ 0.38
COL9A3-209ENST00000469852 WDR18Q9BV38 432 aa17.45■□□□□ 0.38
COL9A3-209ENST00000469852 KCNH4Q9UQ05 1017 aa17.45■□□□□ 0.38
COL9A3-209ENST00000469852 THSD7BQ9C0I4 1608 aa17.44■□□□□ 0.38
COL9A3-209ENST00000469852 LOC285556D6RIA3 1793 aa17.44■□□□□ 0.38
COL9A3-209ENST00000469852 LBX1P52954 281 aa17.44■□□□□ 0.38
COL9A3-209ENST00000469852 ATP2B2Q01814 1243 aa17.44■□□□□ 0.38
COL9A3-209ENST00000469852 ZNF280CQ8ND82 737 aa17.44■□□□□ 0.38
COL9A3-209ENST00000469852 MS4A4AQ96JQ5 239 aa17.44■□□□□ 0.38
COL9A3-209ENST00000469852 TCEANC2Q96MN5 208 aa17.44■□□□□ 0.38
COL9A3-209ENST00000469852 KANSL2Q9H9L4 492 aa17.44■□□□□ 0.38
COL9A3-209ENST00000469852 SENP2Q9HC62 589 aa17.44■□□□□ 0.38
COL9A3-209ENST00000469852 GPHNQ9NQX3 736 aaPredicted RBP17.44■□□□□ 0.38
COL9A3-209ENST00000469852 TCP11L1Q9NUJ3 509 aa17.44■□□□□ 0.38
COL9A3-209ENST00000469852 EIF5BO60841 1220 aaKnown RBP17.43■□□□□ 0.38
COL9A3-209ENST00000469852 ZBTB48P10074 688 aaPredicted RBP17.43■□□□□ 0.38
COL9A3-209ENST00000469852 HSPA8P11142 646 aaKnown RBP17.43■□□□□ 0.38
COL9A3-209ENST00000469852 NOVP48745 357 aa17.43■□□□□ 0.38
COL9A3-209ENST00000469852 MTMR2Q13614 643 aa17.43■□□□□ 0.38
COL9A3-209ENST00000469852 MOGSQ13724 837 aa17.43■□□□□ 0.38
COL9A3-209ENST00000469852 KRT32Q14532 448 aa17.43■□□□□ 0.38
COL9A3-209ENST00000469852 ZYXQ15942 572 aaKnown RBP17.43■□□□□ 0.38
COL9A3-209ENST00000469852 KIAA1755Q5JYT7 1200 aa17.43■□□□□ 0.38
COL9A3-209ENST00000469852 CCDC102AQ96A19 550 aa17.43■□□□□ 0.38
COL9A3-209ENST00000469852 ZSCAN10Q96SZ4 725 aaPredicted RBP17.43■□□□□ 0.38
COL9A3-209ENST00000469852 LRRC2Q9BYS8 371 aa17.43■□□□□ 0.38
COL9A3-209ENST00000469852 C22orf23Q9BZE7 217 aa17.43■□□□□ 0.38
COL9A3-209ENST00000469852 AS3MTQ9HBK9 375 aa17.43■□□□□ 0.38
COL9A3-209ENST00000469852 NYAP2Q9P242 653 aa17.43■□□□□ 0.38
COL9A3-209ENST00000469852 CLIP2Q9UDT6 1046 aa17.43■□□□□ 0.38
COL9A3-209ENST00000469852 TNKSO95271 1327 aa17.43■□□□□ 0.38
COL9A3-209ENST00000469852 PRC1O43663 620 aa17.42■□□□□ 0.38
COL9A3-209ENST00000469852 HMGCS2P54868 508 aa17.42■□□□□ 0.38
COL9A3-209ENST00000469852 EXOSC10Q01780 885 aaKnown RBP17.42■□□□□ 0.38
COL9A3-209ENST00000469852 SEC23AQ15436 765 aa17.42■□□□□ 0.38
COL9A3-209ENST00000469852 RASGRP2Q7LDG7 609 aa17.42■□□□□ 0.38
COL9A3-209ENST00000469852 LRRC47Q8N1G4 583 aaKnown RBP17.42■□□□□ 0.38
COL9A3-209ENST00000469852 ENAHQ8N8S7 591 aaPredicted RBP17.42■□□□□ 0.38
COL9A3-209ENST00000469852 IL17RAQ96F46 866 aa17.42■□□□□ 0.38
COL9A3-209ENST00000469852 STX8Q9UNK0 236 aa17.42■□□□□ 0.38
COL9A3-209ENST00000469852 A0A0G2JLL6 359 aaPredicted RBP17.41■□□□□ 0.38
COL9A3-209ENST00000469852 USP17L10C9JJH3 530 aa17.41■□□□□ 0.38
COL9A3-209ENST00000469852 CXCL11O14625 94 aa17.41■□□□□ 0.38
COL9A3-209ENST00000469852 TTLL1O95922 423 aa17.41■□□□□ 0.38
COL9A3-209ENST00000469852 CASTP20810 708 aaKnown RBP17.41■□□□□ 0.38
COL9A3-209ENST00000469852 BACE1P56817 501 aa17.41■□□□□ 0.38
COL9A3-209ENST00000469852 KIF23Q02241 960 aaPredicted RBP17.41■□□□□ 0.38
COL9A3-209ENST00000469852 MAP2K1Q02750 393 aaPredicted RBP17.41■□□□□ 0.38
COL9A3-209ENST00000469852 PRRT2Q7Z6L0 340 aaPredicted RBP17.41■□□□□ 0.38
COL9A3-209ENST00000469852 IGDCC4Q8TDY8 1250 aa17.41■□□□□ 0.38
COL9A3-209ENST00000469852 BRI3BPQ8WY22 251 aa17.41■□□□□ 0.38
COL9A3-209ENST00000469852 KIF2CQ99661 725 aa17.41■□□□□ 0.38
COL9A3-209ENST00000469852 TBC1D2Q9BYX2 928 aa17.41■□□□□ 0.38
COL9A3-209ENST00000469852 UPF3BQ9BZI7 483 aaKnown RBP17.41■□□□□ 0.38
COL9A3-209ENST00000469852 EMILIN3Q9NT22 766 aa17.41■□□□□ 0.38
COL9A3-209ENST00000469852 TMX2Q9Y320 296 aa17.41■□□□□ 0.38
COL9A3-209ENST00000469852 MCM5P33992 734 aa17.4■□□□□ 0.38
COL9A3-209ENST00000469852 RBM25P49756 843 aaKnown RBP17.4■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms