RNA–Protein interactions for RNA: ENST00000468792.1

COL6A3-208, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 329 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-208ENST00000468792 STX1AQ16623 288 aa8.78□□□□□ -1
COL6A3-208ENST00000468792 RESP18Q5W5W9 173 aa8.78□□□□□ -1
COL6A3-208ENST00000468792 GALNT17Q6IS24 598 aa8.78□□□□□ -1
COL6A3-208ENST00000468792 RAB11FIP4Q86YS3 637 aa8.78□□□□□ -1
COL6A3-208ENST00000468792 CCDC144CPQ8IYA2 1237 aa8.78□□□□□ -1
COL6A3-208ENST00000468792 DIS3L2Q8IYB7 885 aaKnown RBP8.78□□□□□ -1
COL6A3-208ENST00000468792 ZNF444Q8N0Y2 327 aaPredicted RBP8.78□□□□□ -1
COL6A3-208ENST00000468792 RNF214Q8ND24 703 aa8.78□□□□□ -1
COL6A3-208ENST00000468792 NEDD1Q8NHV4 660 aa8.78□□□□□ -1
COL6A3-208ENST00000468792 NUP133Q8WUM0 1156 aa8.78□□□□□ -1
COL6A3-208ENST00000468792 AIFM3Q96NN9 605 aa8.78□□□□□ -1
COL6A3-208ENST00000468792 BPIFA3Q9BQP9 254 aa8.78□□□□□ -1
COL6A3-208ENST00000468792 FTOQ9C0B1 505 aaKnown RBP eCLIP8.78□□□□□ -1
COL6A3-208ENST00000468792 GOLPH3LQ9H4A5 285 aa8.78□□□□□ -1
COL6A3-208ENST00000468792 ANO10Q9NW15 660 aa8.78□□□□□ -1
COL6A3-208ENST00000468792 CNTNAP5Q8WYK1 1306 aa8.78□□□□□ -1
COL6A3-208ENST00000468792 FOCADQ5VW36 1801 aa8.77□□□□□ -1
COL6A3-208ENST00000468792 NAV1Q8NEY1 1877 aa8.77□□□□□ -1.01
COL6A3-208ENST00000468792 BTBD18B2RXH4 712 aa8.77□□□□□ -1.01
COL6A3-208ENST00000468792 PRDM1O75626 825 aa8.77□□□□□ -1.01
COL6A3-208ENST00000468792 PTPREP23469 700 aa8.77□□□□□ -1.01
COL6A3-208ENST00000468792 CALML3P27482 149 aa8.77□□□□□ -1.01
COL6A3-208ENST00000468792 GUCY1A2P33402 732 aa8.77□□□□□ -1.01
COL6A3-208ENST00000468792 TOB1P50616 345 aaPredicted RBP8.77□□□□□ -1.01
COL6A3-208ENST00000468792 TFAP4Q01664 338 aa8.77□□□□□ -1.01
COL6A3-208ENST00000468792 CEBPZQ03701 1054 aaKnown RBP8.77□□□□□ -1.01
COL6A3-208ENST00000468792 GRM4Q14833 912 aa8.77□□□□□ -1.01
COL6A3-208ENST00000468792 DIXDC1Q155Q3 683 aa8.77□□□□□ -1.01
COL6A3-208ENST00000468792 CAMK4Q16566 473 aa8.77□□□□□ -1.01
COL6A3-208ENST00000468792 PFKFB3Q16875 520 aaPredicted RBP8.77□□□□□ -1.01
COL6A3-208ENST00000468792 PPP4R3BQ5MIZ7 849 aa8.77□□□□□ -1.01
COL6A3-208ENST00000468792 SARM1Q6SZW1 724 aa8.77□□□□□ -1.01
COL6A3-208ENST00000468792 DPP8Q6V1X1 898 aaPredicted RBP8.77□□□□□ -1.01
COL6A3-208ENST00000468792 TEX11Q8IYF3 940 aa8.77□□□□□ -1.01
COL6A3-208ENST00000468792 KRI1Q8N9T8 703 aaKnown RBP8.77□□□□□ -1.01
COL6A3-208ENST00000468792 TGFBRAP1Q8WUH2 860 aa8.77□□□□□ -1.01
COL6A3-208ENST00000468792 CNKSR1Q969H4 720 aa8.77□□□□□ -1.01
COL6A3-208ENST00000468792 NAT10Q9H0A0 1025 aaKnown RBP8.77□□□□□ -1.01
COL6A3-208ENST00000468792 KAT14Q9H8E8 782 aa8.77□□□□□ -1.01
COL6A3-208ENST00000468792 MKNK2Q9HBH9 465 aa8.77□□□□□ -1.01
COL6A3-208ENST00000468792 BRMS1Q9HCU9 246 aa8.77□□□□□ -1.01
COL6A3-208ENST00000468792 IL17RBQ9NRM6 502 aa8.77□□□□□ -1.01
COL6A3-208ENST00000468792 GJB4Q9NTQ9 266 aa8.77□□□□□ -1.01
COL6A3-208ENST00000468792 KIAA1468Q9P260 1216 aa8.77□□□□□ -1.01
COL6A3-208ENST00000468792 FLT1P17948 1338 aa8.77□□□□□ -1.01
COL6A3-208ENST00000468792 CDK5RAP2Q96SN8 1893 aa8.77□□□□□ -1.01
COL6A3-208ENST00000468792 PALM3A6NDB9 673 aaPredicted RBP8.76□□□□□ -1.01
COL6A3-208ENST00000468792 H0YIN7 160 aa8.76□□□□□ -1.01
COL6A3-208ENST00000468792 SMIM22K7EJ46 135 aa8.76□□□□□ -1.01
COL6A3-208ENST00000468792 ZNF500O60304 480 aaPredicted RBP8.76□□□□□ -1.01
COL6A3-208ENST00000468792 PPFIA3O75145 1194 aa8.76□□□□□ -1.01
COL6A3-208ENST00000468792 WDHD1O75717 1129 aaPredicted RBP8.76□□□□□ -1.01
COL6A3-208ENST00000468792 ZNF202O95125 648 aa8.76□□□□□ -1.01
COL6A3-208ENST00000468792 CYP2D6P10635 497 aa8.76□□□□□ -1.01
COL6A3-208ENST00000468792 RASA1P20936 1047 aa8.76□□□□□ -1.01
COL6A3-208ENST00000468792 KRT2P35908 639 aa8.76□□□□□ -1.01
COL6A3-208ENST00000468792 ZNF165P49910 485 aa8.76□□□□□ -1.01
COL6A3-208ENST00000468792 NDUFA8P51970 172 aa8.76□□□□□ -1.01
COL6A3-208ENST00000468792 FOSBP53539 338 aa8.76□□□□□ -1.01
COL6A3-208ENST00000468792 GABPAQ06546 454 aa8.76□□□□□ -1.01
COL6A3-208ENST00000468792 SLC15A2Q16348 729 aa8.76□□□□□ -1.01
COL6A3-208ENST00000468792 ANO6Q4KMQ2 910 aa8.76□□□□□ -1.01
COL6A3-208ENST00000468792 STRIP1Q5VSL9 837 aa8.76□□□□□ -1.01
COL6A3-208ENST00000468792 ARHGAP30Q7Z6I6 1101 aaPredicted RBP8.76□□□□□ -1.01
COL6A3-208ENST00000468792 CKAP2LQ8IYA6 745 aa8.76□□□□□ -1.01
COL6A3-208ENST00000468792 SRBD1Q8N5C6 995 aaKnown RBP8.76□□□□□ -1.01
COL6A3-208ENST00000468792 PNMA1Q8ND90 353 aa8.76□□□□□ -1.01
COL6A3-208ENST00000468792 TNFRSF25Q93038 417 aa8.76□□□□□ -1.01
COL6A3-208ENST00000468792 CAMKK2Q96RR4 588 aa8.76□□□□□ -1.01
COL6A3-208ENST00000468792 CBX8Q9HC52 389 aa8.76□□□□□ -1.01
COL6A3-208ENST00000468792 SWAP70Q9UH65 585 aa8.76□□□□□ -1.01
COL6A3-208ENST00000468792 TUBE1Q9UJT0 475 aa8.76□□□□□ -1.01
COL6A3-208ENST00000468792 DAGLAQ9Y4D2 1042 aa8.76□□□□□ -1.01
COL6A3-208ENST00000468792 SRPRBQ9Y5M8 271 aaKnown RBP8.76□□□□□ -1.01
COL6A3-208ENST00000468792 V9GY48 417 aaPredicted RBP8.76□□□□□ -1.01
COL6A3-208ENST00000468792 MYH6P13533 1939 aa8.76□□□□□ -1.01
COL6A3-208ENST00000468792 COL11A2P13942 1736 aaPredicted RBP8.75□□□□□ -1.01
COL6A3-208ENST00000468792 SNED1Q8TER0 1413 aa8.75□□□□□ -1.01
COL6A3-208ENST00000468792 A0A1B0GVL5 298 aa8.75□□□□□ -1.01
COL6A3-208ENST00000468792 MYO1BO43795 1136 aa8.75□□□□□ -1.01
COL6A3-208ENST00000468792 PLEKHA8P1O95397 391 aa8.75□□□□□ -1.01
COL6A3-208ENST00000468792 ADCY5O95622 1261 aa8.75□□□□□ -1.01
COL6A3-208ENST00000468792 TSPY3P0CV98 308 aa8.75□□□□□ -1.01
COL6A3-208ENST00000468792 TSPY8P0CW00 308 aa8.75□□□□□ -1.01
COL6A3-208ENST00000468792 SCG2P13521 617 aa8.75□□□□□ -1.01
COL6A3-208ENST00000468792 PFKFB1P16118 471 aa8.75□□□□□ -1.01
COL6A3-208ENST00000468792 CDC25BP30305 580 aa8.75□□□□□ -1.01
COL6A3-208ENST00000468792 SYKP43405 635 aa8.75□□□□□ -1.01
COL6A3-208ENST00000468792 CDK8P49336 464 aa8.75□□□□□ -1.01
COL6A3-208ENST00000468792 PLCD1P51178 756 aa8.75□□□□□ -1.01
COL6A3-208ENST00000468792 GTF2IP78347 998 aa8.75□□□□□ -1.01
COL6A3-208ENST00000468792 IQCB1Q15051 598 aa8.75□□□□□ -1.01
COL6A3-208ENST00000468792 NPY5RQ15761 445 aa8.75□□□□□ -1.01
COL6A3-208ENST00000468792 CT47A1Q5JQC4 288 aaPredicted RBP8.75□□□□□ -1.01
COL6A3-208ENST00000468792 FAM47AQ5JRC9 791 aa8.75□□□□□ -1.01
COL6A3-208ENST00000468792 KANK3Q6NY19 840 aa8.75□□□□□ -1.01
COL6A3-208ENST00000468792 SHC4Q6S5L8 630 aa8.75□□□□□ -1.01
COL6A3-208ENST00000468792 DAGLBQ8NCG7 672 aa8.75□□□□□ -1.01
COL6A3-208ENST00000468792 SUPT20HQ8NEM7 779 aa8.75□□□□□ -1.01
COL6A3-208ENST00000468792 C7orf43Q8WVR3 580 aa8.75□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 193.9 ms