RNA–Protein interactions for RNA: ENST00000467885.6

USP39-213, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5

Gene USP39, Length 338 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-213ENST00000467885 TMOD2Q9NZR1 351 aa7.04□□□□□ -1.28
USP39-213ENST00000467885 SERPINB13Q9UIV8 391 aa7.04□□□□□ -1.28
USP39-213ENST00000467885 ZNF112Q9UJU3 913 aa7.04□□□□□ -1.28
USP39-213ENST00000467885 CYP46A1Q9Y6A2 500 aa7.04□□□□□ -1.28
USP39-213ENST00000467885 ATRNL1Q5VV63 1379 aa7.04□□□□□ -1.28
USP39-213ENST00000467885 UTRNP46939 3433 aa7.04□□□□□ -1.28
USP39-213ENST00000467885 PITPNM2Q9BZ72 1349 aa7.03□□□□□ -1.28
USP39-213ENST00000467885 IGKV6D-41A0A0C4DH26 115 aa7.03□□□□□ -1.28
USP39-213ENST00000467885 FAM196BA6NMK8 535 aa7.03□□□□□ -1.28
USP39-213ENST00000467885 ITGBL1O95965 494 aaPredicted RBP7.03□□□□□ -1.28
USP39-213ENST00000467885 SLC3A2P08195 630 aaKnown RBP7.03□□□□□ -1.28
USP39-213ENST00000467885 GUCY1A2P33402 732 aa7.03□□□□□ -1.28
USP39-213ENST00000467885 MCM5P33992 734 aa7.03□□□□□ -1.28
USP39-213ENST00000467885 PDE4BQ07343 736 aa7.03□□□□□ -1.28
USP39-213ENST00000467885 TOB2Q14106 344 aaPredicted RBP7.03□□□□□ -1.28
USP39-213ENST00000467885 SEC23AQ15436 765 aa7.03□□□□□ -1.28
USP39-213ENST00000467885 RCSD1Q6JBY9 416 aa7.03□□□□□ -1.28
USP39-213ENST00000467885 BLOC1S2Q6QNY1 142 aa7.03□□□□□ -1.28
USP39-213ENST00000467885 CDC37L1Q7L3B6 337 aa7.03□□□□□ -1.28
USP39-213ENST00000467885 NEDD1Q8NHV4 660 aa7.03□□□□□ -1.28
USP39-213ENST00000467885 CCDC17Q96LX7 622 aa7.03□□□□□ -1.28
USP39-213ENST00000467885 TCEANC2Q96MN5 208 aa7.03□□□□□ -1.28
USP39-213ENST00000467885 CSRNP1Q96S65 589 aa7.03□□□□□ -1.28
USP39-213ENST00000467885 MTA3Q9BTC8 594 aa7.03□□□□□ -1.28
USP39-213ENST00000467885 CNNM2Q9H8M5 875 aa7.03□□□□□ -1.28
USP39-213ENST00000467885 XPO5Q9HAV4 1204 aaKnown RBP eCLIP7.03□□□□□ -1.28
USP39-213ENST00000467885 MKNK2Q9HBH9 465 aa7.03□□□□□ -1.28
USP39-213ENST00000467885 SENP2Q9HC62 589 aa7.03□□□□□ -1.28
USP39-213ENST00000467885 GGA3Q9NZ52 723 aa7.03□□□□□ -1.28
USP39-213ENST00000467885 SWAP70Q9UH65 585 aa7.03□□□□□ -1.28
USP39-213ENST00000467885 HERC5Q9UII4 1024 aaKnown RBP7.03□□□□□ -1.28
USP39-213ENST00000467885 BRPF3Q9ULD4 1205 aa7.03□□□□□ -1.28
USP39-213ENST00000467885 ZNF646O15015 1829 aaPredicted RBP7.03□□□□□ -1.28
USP39-213ENST00000467885 DOCK2Q92608 1830 aa7.03□□□□□ -1.28
USP39-213ENST00000467885 NEDD4P46934 1319 aa7.02□□□□□ -1.28
USP39-213ENST00000467885 PRC1O43663 620 aa7.02□□□□□ -1.29
USP39-213ENST00000467885 RANBP6O60518 1105 aaKnown RBP7.02□□□□□ -1.29
USP39-213ENST00000467885 NMT2O60551 498 aa7.02□□□□□ -1.29
USP39-213ENST00000467885 ECM2O94769 699 aaPredicted RBP7.02□□□□□ -1.29
USP39-213ENST00000467885 HLA-DOAP06340 250 aa7.02□□□□□ -1.29
USP39-213ENST00000467885 CAP2P40123 477 aa7.02□□□□□ -1.29
USP39-213ENST00000467885 LIFRP42702 1097 aa7.02□□□□□ -1.29
USP39-213ENST00000467885 NT5C2P49902 561 aa7.02□□□□□ -1.29
USP39-213ENST00000467885 AK2P54819 239 aa7.02□□□□□ -1.29
USP39-213ENST00000467885 FMR1Q06787 632 aaKnown RBP eCLIP7.02□□□□□ -1.29
USP39-213ENST00000467885 TRDNQ13061 729 aa7.02□□□□□ -1.29
USP39-213ENST00000467885 TNFAIP1Q13829 316 aa7.02□□□□□ -1.29
USP39-213ENST00000467885 SHROOM1Q2M3G4 852 aaPredicted RBP7.02□□□□□ -1.29
USP39-213ENST00000467885 SUPT20HL1Q3ZLR7 823 aa7.02□□□□□ -1.29
USP39-213ENST00000467885 CERKLQ49MI3 558 aaPredicted RBP7.02□□□□□ -1.29
USP39-213ENST00000467885 EAPPQ56P03 285 aaPredicted RBP7.02□□□□□ -1.29
USP39-213ENST00000467885 RRP12Q5JTH9 1297 aaKnown RBP7.02□□□□□ -1.29
USP39-213ENST00000467885 Q6ZUG5 572 aa7.02□□□□□ -1.29
USP39-213ENST00000467885 KRT26Q7Z3Y9 468 aa7.02□□□□□ -1.29
USP39-213ENST00000467885 DGKHQ86XP1 1220 aa7.02□□□□□ -1.29
USP39-213ENST00000467885 APOBEC3FQ8IUX4 373 aaKnown RBP7.02□□□□□ -1.29
USP39-213ENST00000467885 AMOTL1Q8IY63 956 aa7.02□□□□□ -1.29
USP39-213ENST00000467885 TMTC2Q8N394 836 aa7.02□□□□□ -1.29
USP39-213ENST00000467885 ESR2Q92731 530 aa7.02□□□□□ -1.29
USP39-213ENST00000467885 MKL1Q969V6 931 aa7.02□□□□□ -1.29
USP39-213ENST00000467885 TMEM87BQ96K49 555 aa7.02□□□□□ -1.29
USP39-213ENST00000467885 ZSCAN10Q96SZ4 725 aaPredicted RBP7.02□□□□□ -1.29
USP39-213ENST00000467885 ZKSCAN3Q9BRR0 538 aa7.02□□□□□ -1.29
USP39-213ENST00000467885 LRRC2Q9BYS8 371 aa7.02□□□□□ -1.29
USP39-213ENST00000467885 TBC1D2Q9BYX2 928 aa7.02□□□□□ -1.29
USP39-213ENST00000467885 GLIS2Q9BZE0 524 aaPredicted RBP7.02□□□□□ -1.29
USP39-213ENST00000467885 ZNF287Q9HBT7 754 aa7.02□□□□□ -1.29
USP39-213ENST00000467885 PPP2R3BQ9Y5P8 575 aa7.02□□□□□ -1.29
USP39-213ENST00000467885 WDR19Q8NEZ3 1342 aa7.01□□□□□ -1.29
USP39-213ENST00000467885 MYH13Q9UKX3 1938 aa7.01□□□□□ -1.29
USP39-213ENST00000467885 ROBO3Q96MS0 1386 aa7.01□□□□□ -1.29
USP39-213ENST00000467885 ADM5C9JUS6 153 aa7.01□□□□□ -1.29
USP39-213ENST00000467885 SH2B2O14492 632 aaPredicted RBP7.01□□□□□ -1.29
USP39-213ENST00000467885 IFIT3O14879 490 aaKnown RBP7.01□□□□□ -1.29
USP39-213ENST00000467885 CTNND1O60716 968 aaKnown RBP7.01□□□□□ -1.29
USP39-213ENST00000467885 PPP1R37O75864 691 aa7.01□□□□□ -1.29
USP39-213ENST00000467885 AKR1B1P15121 316 aa7.01□□□□□ -1.29
USP39-213ENST00000467885 PDIA3P30101 505 aaKnown RBP7.01□□□□□ -1.29
USP39-213ENST00000467885 CST9Q5W186 159 aa7.01□□□□□ -1.29
USP39-213ENST00000467885 MAP1SQ66K74 1059 aaPredicted RBP7.01□□□□□ -1.29
USP39-213ENST00000467885 SGMS1Q86VZ5 419 aa7.01□□□□□ -1.29
USP39-213ENST00000467885 SULF1Q8IWU6 871 aa7.01□□□□□ -1.29
USP39-213ENST00000467885 CRACR2BQ8N4Y2 399 aaPredicted RBP7.01□□□□□ -1.29
USP39-213ENST00000467885 ENAHQ8N8S7 591 aaPredicted RBP7.01□□□□□ -1.29
USP39-213ENST00000467885 ZNF526Q8TF50 670 aaPredicted RBP7.01□□□□□ -1.29
USP39-213ENST00000467885 KLRG1Q96E93 195 aa7.01□□□□□ -1.29
USP39-213ENST00000467885 ZNF274Q96GC6 653 aaPredicted RBP7.01□□□□□ -1.29
USP39-213ENST00000467885 LY9Q9HBG7 655 aa7.01□□□□□ -1.29
USP39-213ENST00000467885 TOMM22Q9NS69 142 aa7.01□□□□□ -1.29
USP39-213ENST00000467885 MTMR4Q9NYA4 1195 aa7.01□□□□□ -1.29
USP39-213ENST00000467885 TPCN1Q9ULQ1 816 aa7.01□□□□□ -1.29
USP39-213ENST00000467885 FZD1Q9UP38 647 aa7.01□□□□□ -1.29
USP39-213ENST00000467885 LIMCH1Q9UPQ0 1083 aa7.01□□□□□ -1.29
USP39-213ENST00000467885 CCDC88AQ3V6T2 1871 aa7□□□□□ -1.29
USP39-213ENST00000467885 COL2A1P02458 1487 aaPredicted RBP7□□□□□ -1.29
USP39-213ENST00000467885 MYH2Q9UKX2 1941 aa7□□□□□ -1.29
USP39-213ENST00000467885 DICER1Q9UPY3 1922 aaKnown RBP7□□□□□ -1.29
USP39-213ENST00000467885 TSPY2A6NKD2 308 aa7□□□□□ -1.29
USP39-213ENST00000467885 TRAF5O00463 557 aa7□□□□□ -1.29
USP39-213ENST00000467885 TSPY3P0CV98 308 aa7□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms