RNA–Protein interactions for RNA: ENST00000466541.1

SHROOM3-202, Transcript of shroom family member 3, humanhuman

TSL 3

Gene SHROOM3, Length 628 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-202ENST00000466541 WDR18Q9BV38 432 aa14.32□□□□□ -0.12
SHROOM3-202ENST00000466541 TBC1D2Q9BYX2 928 aa14.32□□□□□ -0.12
SHROOM3-202ENST00000466541 IL25Q9H293 177 aa14.32□□□□□ -0.12
SHROOM3-202ENST00000466541 GINM1Q9NU53 330 aa14.32□□□□□ -0.12
SHROOM3-202ENST00000466541 GPR25O00155 361 aa14.31□□□□□ -0.12
SHROOM3-202ENST00000466541 CYP2C8P10632 490 aa14.31□□□□□ -0.12
SHROOM3-202ENST00000466541 RASA1P20936 1047 aa14.31□□□□□ -0.12
SHROOM3-202ENST00000466541 BACE1P56817 501 aa14.31□□□□□ -0.12
SHROOM3-202ENST00000466541 ALX1Q15699 326 aa14.31□□□□□ -0.12
SHROOM3-202ENST00000466541 ANKRD23Q86SG2 305 aa14.31□□□□□ -0.12
SHROOM3-202ENST00000466541 ZNF296Q8WUU4 475 aaPredicted RBP14.31□□□□□ -0.12
SHROOM3-202ENST00000466541 CCDC17Q96LX7 622 aa14.31□□□□□ -0.12
SHROOM3-202ENST00000466541 ZNF287Q9HBT7 754 aa14.31□□□□□ -0.12
SHROOM3-202ENST00000466541 RANBP6O60518 1105 aaKnown RBP14.3□□□□□ -0.12
SHROOM3-202ENST00000466541 ICA1Q05084 483 aa14.3□□□□□ -0.12
SHROOM3-202ENST00000466541 USP17L2Q6R6M4 530 aa14.3□□□□□ -0.12
SHROOM3-202ENST00000466541 PROCA1Q8NCQ7 364 aaPredicted RBP14.3□□□□□ -0.12
SHROOM3-202ENST00000466541 PRDM10Q9NQV6 1147 aa14.3□□□□□ -0.12
SHROOM3-202ENST00000466541 CPA4Q9UI42 421 aa14.3□□□□□ -0.12
SHROOM3-202ENST00000466541 C19orf81C9J6K1 198 aa14.29□□□□□ -0.12
SHROOM3-202ENST00000466541 FKTNO75072 461 aa14.29□□□□□ -0.12
SHROOM3-202ENST00000466541 TSPY3P0CV98 308 aa14.29□□□□□ -0.12
SHROOM3-202ENST00000466541 TSPY8P0CW00 308 aa14.29□□□□□ -0.12
SHROOM3-202ENST00000466541 EEF2P13639 858 aaKnown RBP14.29□□□□□ -0.12
SHROOM3-202ENST00000466541 TFAP4Q01664 338 aa14.29□□□□□ -0.12
SHROOM3-202ENST00000466541 BMP2KLQ5H9B9 411 aa14.29□□□□□ -0.12
SHROOM3-202ENST00000466541 SAMD1Q6SPF0 538 aaPredicted RBP14.29□□□□□ -0.12
SHROOM3-202ENST00000466541 SMCR8Q8TEV9 937 aaPredicted RBP14.29□□□□□ -0.12
SHROOM3-202ENST00000466541 CHMP4CQ96CF2 233 aa14.29□□□□□ -0.12
SHROOM3-202ENST00000466541 PARK7Q99497 189 aaKnown RBP14.29□□□□□ -0.12
SHROOM3-202ENST00000466541 ARHGEF10LQ9HCE6 1279 aa14.29□□□□□ -0.12
SHROOM3-202ENST00000466541 EMILIN3Q9NT22 766 aa14.29□□□□□ -0.12
SHROOM3-202ENST00000466541 AGTPBP1Q9UPW5 1226 aa14.29□□□□□ -0.12
SHROOM3-202ENST00000466541 ROBO3Q96MS0 1386 aa14.29□□□□□ -0.12
SHROOM3-202ENST00000466541 LOC285556D6RIA3 1793 aa14.29□□□□□ -0.12
SHROOM3-202ENST00000466541 A0A1W2PRG0 241 aa14.28□□□□□ -0.12
SHROOM3-202ENST00000466541 ZNF213O14771 459 aa14.28□□□□□ -0.12
SHROOM3-202ENST00000466541 OSBPP22059 807 aa14.28□□□□□ -0.12
SHROOM3-202ENST00000466541 IRX3P78415 501 aaPredicted RBP14.28□□□□□ -0.12
SHROOM3-202ENST00000466541 PTH1RQ03431 593 aa14.28□□□□□ -0.12
SHROOM3-202ENST00000466541 SPICE1Q8N0Z3 855 aa14.28□□□□□ -0.12
SHROOM3-202ENST00000466541 KANSL2Q9H9L4 492 aa14.28□□□□□ -0.12
SHROOM3-202ENST00000466541 TAOK2Q9UL54 1235 aa14.28□□□□□ -0.12
SHROOM3-202ENST00000466541 MYH4Q9Y623 1939 aa14.28□□□□□ -0.12
SHROOM3-202ENST00000466541 TACC3Q9Y6A5 838 aa14.28□□□□□ -0.12
SHROOM3-202ENST00000466541 RAD50Q92878 1312 aa14.27□□□□□ -0.12
SHROOM3-202ENST00000466541 TSPY2A6NKD2 308 aa14.27□□□□□ -0.13
SHROOM3-202ENST00000466541 TLR2O60603 784 aa14.27□□□□□ -0.13
SHROOM3-202ENST00000466541 USP14P54578 494 aa14.27□□□□□ -0.13
SHROOM3-202ENST00000466541 PABPC4Q13310 644 aaKnown RBP eCLIP14.27□□□□□ -0.13
SHROOM3-202ENST00000466541 SH3D19Q5HYK7 790 aa14.27□□□□□ -0.13
SHROOM3-202ENST00000466541 MFSD6Q6ZSS7 791 aa14.27□□□□□ -0.13
SHROOM3-202ENST00000466541 CD99L2Q8TCZ2 262 aa14.27□□□□□ -0.13
SHROOM3-202ENST00000466541 DSCC1Q9BVC3 393 aa14.27□□□□□ -0.13
SHROOM3-202ENST00000466541 GNL3Q9BVP2 549 aaKnown RBP eCLIP14.27□□□□□ -0.13
SHROOM3-202ENST00000466541 KIAA1683Q9H0B3 1180 aa14.27□□□□□ -0.13
SHROOM3-202ENST00000466541 ASCC2Q9H1I8 757 aaPredicted RBP14.27□□□□□ -0.13
SHROOM3-202ENST00000466541 ZCCHC17Q9NP64 241 aaKnown RBP14.27□□□□□ -0.13
SHROOM3-202ENST00000466541 CLIP2Q9UDT6 1046 aa14.27□□□□□ -0.13
SHROOM3-202ENST00000466541 CTNNA3Q9UI47 895 aa14.27□□□□□ -0.13
SHROOM3-202ENST00000466541 PNMA3Q9UL41 463 aa14.27□□□□□ -0.13
SHROOM3-202ENST00000466541 SGSM2O43147 1006 aa14.26□□□□□ -0.13
SHROOM3-202ENST00000466541 SP3Q02447 781 aa14.26□□□□□ -0.13
SHROOM3-202ENST00000466541 IMMTQ16891 758 aaKnown RBP14.26□□□□□ -0.13
SHROOM3-202ENST00000466541 AKNAD1Q5T1N1 836 aa14.26□□□□□ -0.13
SHROOM3-202ENST00000466541 CASC1Q6TDU7 716 aa14.26□□□□□ -0.13
SHROOM3-202ENST00000466541 KIAA1211Q6ZU35 1233 aa14.26□□□□□ -0.13
SHROOM3-202ENST00000466541 SIAH1Q8IUQ4 282 aa14.26□□□□□ -0.13
SHROOM3-202ENST00000466541 TBC1D10CQ8IV04 446 aa14.26□□□□□ -0.13
SHROOM3-202ENST00000466541 ANKRD13CQ8N6S4 541 aa14.26□□□□□ -0.13
SHROOM3-202ENST00000466541 CEP95Q96GE4 821 aa14.26□□□□□ -0.13
SHROOM3-202ENST00000466541 CFHR5Q9BXR6 569 aa14.26□□□□□ -0.13
SHROOM3-202ENST00000466541 TANGO6Q9C0B7 1094 aa14.26□□□□□ -0.13
SHROOM3-202ENST00000466541 RPAP3Q9H6T3 665 aaPredicted RBP14.26□□□□□ -0.13
SHROOM3-202ENST00000466541 SH2D4AQ9H788 454 aa14.26□□□□□ -0.13
SHROOM3-202ENST00000466541 ANAPC4Q9UJX5 808 aa14.26□□□□□ -0.13
SHROOM3-202ENST00000466541 MTMR7Q9Y216 660 aa14.26□□□□□ -0.13
SHROOM3-202ENST00000466541 LAMA4Q16363 1823 aa14.25□□□□□ -0.13
SHROOM3-202ENST00000466541 NMT2O60551 498 aa14.25□□□□□ -0.13
SHROOM3-202ENST00000466541 PEX10O60683 326 aa14.25□□□□□ -0.13
SHROOM3-202ENST00000466541 VCAM1P19320 739 aa14.25□□□□□ -0.13
SHROOM3-202ENST00000466541 KIAA1755Q5JYT7 1200 aa14.25□□□□□ -0.13
SHROOM3-202ENST00000466541 TNS4Q8IZW8 715 aa14.25□□□□□ -0.13
SHROOM3-202ENST00000466541 P2RX7Q99572 595 aaKnown RBP14.25□□□□□ -0.13
SHROOM3-202ENST00000466541 ESYT1Q9BSJ8 1104 aa14.25□□□□□ -0.13
SHROOM3-202ENST00000466541 NBPF3Q9H094 633 aa14.25□□□□□ -0.13
SHROOM3-202ENST00000466541 ANO2Q9NQ90 1003 aa14.25□□□□□ -0.13
SHROOM3-202ENST00000466541 ISY1Q9ULR0 285 aaKnown RBP14.25□□□□□ -0.13
SHROOM3-202ENST00000466541 DDX52Q9Y2R4 599 aaKnown RBP eCLIP14.25□□□□□ -0.13
SHROOM3-202ENST00000466541 ZSWIM8A7E2V4 1837 aa14.25□□□□□ -0.13
SHROOM3-202ENST00000466541 ZMYM6O95789 1325 aa14.24□□□□□ -0.13
SHROOM3-202ENST00000466541 NEDD4P46934 1319 aa14.24□□□□□ -0.13
SHROOM3-202ENST00000466541 GREB1LQ9C091 1923 aaPredicted RBP14.24□□□□□ -0.13
SHROOM3-202ENST00000466541 CDC45O75419 566 aa14.24□□□□□ -0.13
SHROOM3-202ENST00000466541 KIF22Q14807 665 aa14.24□□□□□ -0.13
SHROOM3-202ENST00000466541 LRRC47Q8N1G4 583 aaKnown RBP14.24□□□□□ -0.13
SHROOM3-202ENST00000466541 NEDD1Q8NHV4 660 aa14.24□□□□□ -0.13
SHROOM3-202ENST00000466541 ERO1AQ96HE7 468 aa14.24□□□□□ -0.13
SHROOM3-202ENST00000466541 PAGR1Q9BTK6 254 aa14.24□□□□□ -0.13
SHROOM3-202ENST00000466541 ARHGAP39Q9C0H5 1083 aa14.24□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms