RNA–Protein interactions for RNA: ENST00000466222.6

CAPN3-209, Transcript of calpain 3, humanhuman

TSL 2

Gene CAPN3, Length 1,934 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN3-209ENST00000466222 NAV1Q8NEY1 1877 aa21.7■■□□□ 1.06
CAPN3-209ENST00000466222 CDC27P30260 824 aa21.7■■□□□ 1.06
CAPN3-209ENST00000466222 PRAMEF18Q5VWM3 479 aa21.7■■□□□ 1.06
CAPN3-209ENST00000466222 GJB2P29033 226 aa21.69■■□□□ 1.06
CAPN3-209ENST00000466222 JAG1P78504 1218 aa21.69■■□□□ 1.06
CAPN3-209ENST00000466222 FKBP1CQ5VVH2 108 aa21.69■■□□□ 1.06
CAPN3-209ENST00000466222 FAM217BQ9NTX9 383 aaPredicted RBP21.69■■□□□ 1.06
CAPN3-209ENST00000466222 ZBTB43O43298 467 aa21.68■■□□□ 1.06
CAPN3-209ENST00000466222 MMP14P50281 582 aa21.68■■□□□ 1.06
CAPN3-209ENST00000466222 DLK2Q6UY11 383 aa21.68■■□□□ 1.06
CAPN3-209ENST00000466222 FAM83AQ86UY5 434 aa21.68■■□□□ 1.06
CAPN3-209ENST00000466222 ZSCAN30Q86W11 494 aa21.68■■□□□ 1.06
CAPN3-209ENST00000466222 NEDD1Q8NHV4 660 aa21.68■■□□□ 1.06
CAPN3-209ENST00000466222 NUP133Q8WUM0 1156 aa21.68■■□□□ 1.06
CAPN3-209ENST00000466222 DDX11Q96FC9 970 aa21.68■■□□□ 1.06
CAPN3-209ENST00000466222 CEP95Q96GE4 821 aa21.68■■□□□ 1.06
CAPN3-209ENST00000466222 SWAP70Q9UH65 585 aa21.68■■□□□ 1.06
CAPN3-209ENST00000466222 STX8Q9UNK0 236 aa21.68■■□□□ 1.06
CAPN3-209ENST00000466222 SMC3Q9UQE7 1217 aa21.68■■□□□ 1.06
CAPN3-209ENST00000466222 ZSCAN21Q9Y5A6 473 aaPredicted RBP21.68■■□□□ 1.06
CAPN3-209ENST00000466222 CDK5RAP2Q96SN8 1893 aa21.68■■□□□ 1.06
CAPN3-209ENST00000466222 MPHOSPH10O00566 681 aaKnown RBP21.68■■□□□ 1.06
CAPN3-209ENST00000466222 METAP2P50579 478 aaKnown RBP eCLIP21.68■■□□□ 1.06
CAPN3-209ENST00000466222 METTL16Q86W50 562 aaKnown RBP21.68■■□□□ 1.06
CAPN3-209ENST00000466222 FOXP4Q8IVH2 680 aaPredicted RBP21.68■■□□□ 1.06
CAPN3-209ENST00000466222 ZNF654Q8IZM8 581 aa21.68■■□□□ 1.06
CAPN3-209ENST00000466222 CMTR1Q8N1G2 835 aaKnown RBP21.68■■□□□ 1.06
CAPN3-209ENST00000466222 PDLIM2Q96JY6 352 aa21.68■■□□□ 1.06
CAPN3-209ENST00000466222 MTA3Q9BTC8 594 aa21.68■■□□□ 1.06
CAPN3-209ENST00000466222 RBSNQ9H1K0 784 aa21.68■■□□□ 1.06
CAPN3-209ENST00000466222 TMEM63CQ9P1W3 806 aa21.68■■□□□ 1.06
CAPN3-209ENST00000466222 GDF11O95390 407 aa21.67■■□□□ 1.06
CAPN3-209ENST00000466222 DPY19L2Q6NUT2 758 aa21.67■■□□□ 1.06
CAPN3-209ENST00000466222 TMEM87AQ8NBN3 555 aa21.67■■□□□ 1.06
CAPN3-209ENST00000466222 TEPSINQ96N21 525 aa21.67■■□□□ 1.06
CAPN3-209ENST00000466222 DEFB129Q9H1M3 183 aa21.67■■□□□ 1.06
CAPN3-209ENST00000466222 GGA3Q9NZ52 723 aa21.67■■□□□ 1.06
CAPN3-209ENST00000466222 TATDN1Q6P1N9 297 aa21.67■■□□□ 1.06
CAPN3-209ENST00000466222 RASGRP2Q7LDG7 609 aa21.67■■□□□ 1.06
CAPN3-209ENST00000466222 TMTC2Q8N394 836 aa21.67■■□□□ 1.06
CAPN3-209ENST00000466222 NSUN7Q8NE18 718 aaKnown RBP21.67■■□□□ 1.06
CAPN3-209ENST00000466222 TRIM34Q9BYJ4 488 aa21.67■■□□□ 1.06
CAPN3-209ENST00000466222 XPO5Q9HAV4 1204 aaKnown RBP eCLIP21.67■■□□□ 1.06
CAPN3-209ENST00000466222 TCP11L1Q9NUJ3 509 aa21.67■■□□□ 1.06
CAPN3-209ENST00000466222 MTMR7Q9Y216 660 aa21.67■■□□□ 1.06
CAPN3-209ENST00000466222 GOLGA8AA7E2F4 631 aa21.66■■□□□ 1.06
CAPN3-209ENST00000466222 CERKLQ49MI3 558 aaPredicted RBP21.66■■□□□ 1.06
CAPN3-209ENST00000466222 FOXD4L5Q5VV16 416 aaPredicted RBP21.66■■□□□ 1.06
CAPN3-209ENST00000466222 FOXD4L4Q8WXT5 416 aaPredicted RBP21.66■■□□□ 1.06
CAPN3-209ENST00000466222 RBM27Q9P2N5 1060 aaKnown RBP21.66■■□□□ 1.06
CAPN3-209ENST00000466222 LAMB1P07942 1786 aa21.65■■□□□ 1.06
CAPN3-209ENST00000466222 LMOD1P29536 600 aaPredicted RBP21.65■■□□□ 1.06
CAPN3-209ENST00000466222 TROAPQ12815 778 aa21.65■■□□□ 1.06
CAPN3-209ENST00000466222 CCDC82Q8N4S0 544 aa21.65■■□□□ 1.06
CAPN3-209ENST00000466222 TMEM47Q9BQJ4 181 aa21.65■■□□□ 1.06
CAPN3-209ENST00000466222 SBF1O95248 1867 aa21.65■■□□□ 1.06
CAPN3-209ENST00000466222 PTPDC1A2A3K4 754 aa21.65■■□□□ 1.06
CAPN3-209ENST00000466222 UBE2Q2LH0YL09 131 aa21.65■■□□□ 1.06
CAPN3-209ENST00000466222 SYNE3Q6ZMZ3 975 aa21.65■■□□□ 1.06
CAPN3-209ENST00000466222 DGKHQ86XP1 1220 aa21.65■■□□□ 1.06
CAPN3-209ENST00000466222 ADARB2Q9NS39 739 aaKnown RBP21.65■■□□□ 1.06
CAPN3-209ENST00000466222 IGKV6D-41A0A0C4DH26 115 aa21.64■■□□□ 1.05
CAPN3-209ENST00000466222 GLTPD2A6NH11 291 aa21.64■■□□□ 1.05
CAPN3-209ENST00000466222 TNNI2P48788 182 aa21.64■■□□□ 1.05
CAPN3-209ENST00000466222 NBPF12Q5TAG4 269 aaPredicted RBP21.64■■□□□ 1.05
CAPN3-209ENST00000466222 PHKBQ93100 1093 aa21.64■■□□□ 1.05
CAPN3-209ENST00000466222 MTMR4Q9NYA4 1195 aa21.64■■□□□ 1.05
CAPN3-209ENST00000466222 FRMD4AQ9P2Q2 1039 aaPredicted RBP21.64■■□□□ 1.05
CAPN3-209ENST00000466222 FZD1Q9UP38 647 aa21.64■■□□□ 1.05
CAPN3-209ENST00000466222 PDIA4P13667 645 aaKnown RBP21.63■■□□□ 1.05
CAPN3-209ENST00000466222 CATIPQ7Z7H3 387 aa21.63■■□□□ 1.05
CAPN3-209ENST00000466222 FANCBQ8NB91 859 aa21.63■■□□□ 1.05
CAPN3-209ENST00000466222 KAT14Q9H8E8 782 aa21.63■■□□□ 1.05
CAPN3-209ENST00000466222 ATP6V1DQ9Y5K8 247 aa21.63■■□□□ 1.05
CAPN3-209ENST00000466222 FOCADQ5VW36 1801 aa21.63■■□□□ 1.05
CAPN3-209ENST00000466222 FDPSP14324 419 aaKnown RBP21.63■■□□□ 1.05
CAPN3-209ENST00000466222 TNFAIP1Q13829 316 aa21.63■■□□□ 1.05
CAPN3-209ENST00000466222 PNMA1Q8ND90 353 aa21.63■■□□□ 1.05
CAPN3-209ENST00000466222 SMARCC2Q8TAQ2 1214 aa21.63■■□□□ 1.05
CAPN3-209ENST00000466222 ANKS1AQ92625 1134 aa21.63■■□□□ 1.05
CAPN3-209ENST00000466222 NAP1L5Q96NT1 182 aaPredicted RBP21.63■■□□□ 1.05
CAPN3-209ENST00000466222 TAOK2Q9UL54 1235 aa21.63■■□□□ 1.05
CAPN3-209ENST00000466222 COL2A1P02458 1487 aaPredicted RBP21.62■■□□□ 1.05
CAPN3-209ENST00000466222 SYCE3A1L190 88 aa21.62■■□□□ 1.05
CAPN3-209ENST00000466222 POTECB2RU33 542 aa21.62■■□□□ 1.05
CAPN3-209ENST00000466222 CPLX1O14810 134 aa21.62■■□□□ 1.05
CAPN3-209ENST00000466222 SYT1P21579 422 aa21.62■■□□□ 1.05
CAPN3-209ENST00000466222 GUCY1A2P33402 732 aa21.62■■□□□ 1.05
CAPN3-209ENST00000466222 FOSBP53539 338 aa21.62■■□□□ 1.05
CAPN3-209ENST00000466222 SEPT2Q15019 361 aa21.62■■□□□ 1.05
CAPN3-209ENST00000466222 NTRK3Q16288 839 aa21.62■■□□□ 1.05
CAPN3-209ENST00000466222 L3MBTL3Q96JM7 780 aaPredicted RBP21.62■■□□□ 1.05
CAPN3-209ENST00000466222 CLIP2Q9UDT6 1046 aa21.62■■□□□ 1.05
CAPN3-209ENST00000466222 HERC5Q9UII4 1024 aaKnown RBP21.62■■□□□ 1.05
CAPN3-209ENST00000466222 GH2P01242 217 aa21.61■■□□□ 1.05
CAPN3-209ENST00000466222 MSNP26038 577 aaKnown RBP21.61■■□□□ 1.05
CAPN3-209ENST00000466222 ATP2B2Q01814 1243 aa21.61■■□□□ 1.05
CAPN3-209ENST00000466222 RTN1Q16799 776 aa21.61■■□□□ 1.05
CAPN3-209ENST00000466222 LRRC47Q8N1G4 583 aaKnown RBP21.61■■□□□ 1.05
CAPN3-209ENST00000466222 MYH1P12882 1939 aa21.61■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms