RNA–Protein interactions for RNA: ENST00000465727.5

SDF4-205, Transcript of stromal cell derived factor 4, humanhuman

TSL 2

Gene SDF4, Length 2,095 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDF4-205ENST00000465727 NBPF14Q5TI25 921 aa22.33■■□□□ 1.17
SDF4-205ENST00000465727 NBPF10Q6P3W6 841 aaKnown RBP22.33■■□□□ 1.17
SDF4-205ENST00000465727 SH3RF1Q7Z6J0 888 aa22.33■■□□□ 1.17
SDF4-205ENST00000465727 NBPF15Q8N660 670 aa22.33■■□□□ 1.17
SDF4-205ENST00000465727 NOA1Q8NC60 698 aaKnown RBP22.33■■□□□ 1.17
SDF4-205ENST00000465727 JRKLQ9Y4A0 524 aa22.33■■□□□ 1.17
SDF4-205ENST00000465727 TARSL2A2RTX5 802 aaKnown RBP22.32■■□□□ 1.16
SDF4-205ENST00000465727 LRRC10BA6NIK2 292 aa22.32■■□□□ 1.16
SDF4-205ENST00000465727 PACS2Q86VP3 889 aa22.32■■□□□ 1.16
SDF4-205ENST00000465727 CSRNP2Q9H175 543 aa22.32■■□□□ 1.16
SDF4-205ENST00000465727 PCDHB6Q9Y5E3 794 aa22.32■■□□□ 1.16
SDF4-205ENST00000465727 PHACTR2O75167 634 aa22.32■■□□□ 1.16
SDF4-205ENST00000465727 PRPF6O94906 941 aaKnown RBP22.32■■□□□ 1.16
SDF4-205ENST00000465727 DEXIO95424 95 aa22.32■■□□□ 1.16
SDF4-205ENST00000465727 USP14P54578 494 aa22.32■■□□□ 1.16
SDF4-205ENST00000465727 ERVK-24P63145 666 aa22.32■■□□□ 1.16
SDF4-205ENST00000465727 DNAJC21Q5F1R6 531 aaKnown RBP22.32■■□□□ 1.16
SDF4-205ENST00000465727 CNNM2Q9H8M5 875 aa22.32■■□□□ 1.16
SDF4-205ENST00000465727 SEC31BQ9NQW1 1179 aa22.32■■□□□ 1.16
SDF4-205ENST00000465727 NLRP2Q9NX02 1062 aa22.32■■□□□ 1.16
SDF4-205ENST00000465727 LIMA1Q9UHB6 759 aaKnown RBP22.32■■□□□ 1.16
SDF4-205ENST00000465727 APPP05067 770 aa22.31■■□□□ 1.16
SDF4-205ENST00000465727 CD44P16070 742 aaKnown RBP22.31■■□□□ 1.16
SDF4-205ENST00000465727 CABP4P57796 275 aa22.31■■□□□ 1.16
SDF4-205ENST00000465727 TTLL7Q6ZT98 887 aa22.31■■□□□ 1.16
SDF4-205ENST00000465727 TRAPPC11Q7Z392 1133 aa22.31■■□□□ 1.16
SDF4-205ENST00000465727 TAOK2Q9UL54 1235 aa22.31■■□□□ 1.16
SDF4-205ENST00000465727 PSMD14O00487 310 aa22.3■■□□□ 1.16
SDF4-205ENST00000465727 SYF2O95926 243 aaKnown RBP22.3■■□□□ 1.16
SDF4-205ENST00000465727 RCAN1P53805 252 aa22.3■■□□□ 1.16
SDF4-205ENST00000465727 KLHL10Q6JEL2 608 aa22.3■■□□□ 1.16
SDF4-205ENST00000465727 NKX2-3Q8TAU0 364 aa22.3■■□□□ 1.16
SDF4-205ENST00000465727 TIAM2Q8IVF5 1701 aa22.3■■□□□ 1.16
SDF4-205ENST00000465727 CCDC196A0A1B0GTZ2 297 aa22.3■■□□□ 1.16
SDF4-205ENST00000465727 IFIT3O14879 490 aaKnown RBP22.3■■□□□ 1.16
SDF4-205ENST00000465727 EIF5P55010 431 aaKnown RBP22.3■■□□□ 1.16
SDF4-205ENST00000465727 ANKRD20A12PQ8NF67 263 aa22.3■■□□□ 1.16
SDF4-205ENST00000465727 MYL10Q9BUA6 226 aa22.3■■□□□ 1.16
SDF4-205ENST00000465727 GEMIN8Q9NWZ8 242 aaKnown RBP22.3■■□□□ 1.16
SDF4-205ENST00000465727 PPP1R3GB7ZBB8 358 aa22.29■■□□□ 1.16
SDF4-205ENST00000465727 DPYDQ12882 1025 aa22.29■■□□□ 1.16
SDF4-205ENST00000465727 PAGE5Q96GU1 130 aa22.29■■□□□ 1.16
SDF4-205ENST00000465727 ZFP91Q96JP5 570 aaPredicted RBP22.29■■□□□ 1.16
SDF4-205ENST00000465727 HAUS4Q9H6D7 363 aa22.29■■□□□ 1.16
SDF4-205ENST00000465727 HPCAL4Q9UM19 191 aa22.29■■□□□ 1.16
SDF4-205ENST00000465727 IQSEC3Q9UPP2 1182 aaPredicted RBP22.29■■□□□ 1.16
SDF4-205ENST00000465727 BMP15O95972 392 aa22.29■■□□□ 1.16
SDF4-205ENST00000465727 GUCY2CP25092 1073 aa22.29■■□□□ 1.16
SDF4-205ENST00000465727 MCAMP43121 646 aa22.29■■□□□ 1.16
SDF4-205ENST00000465727 STX17P56962 302 aa22.29■■□□□ 1.16
SDF4-205ENST00000465727 LMOD2Q6P5Q4 547 aa22.29■■□□□ 1.16
SDF4-205ENST00000465727 COG1Q8WTW3 980 aa22.29■■□□□ 1.16
SDF4-205ENST00000465727 MTA3Q9BTC8 594 aa22.29■■□□□ 1.16
SDF4-205ENST00000465727 KCNJ14Q9UNX9 436 aa22.29■■□□□ 1.16
SDF4-205ENST00000465727 STRCP1A6NGW2 1772 aa22.28■■□□□ 1.16
SDF4-205ENST00000465727 A0A087WUV0 522 aaPredicted RBP22.28■■□□□ 1.16
SDF4-205ENST00000465727 UBE2Q2LH0YL09 131 aa22.28■■□□□ 1.16
SDF4-205ENST00000465727 N4BP3O15049 544 aa22.28■■□□□ 1.16
SDF4-205ENST00000465727 CYP27B1O15528 508 aa22.28■■□□□ 1.16
SDF4-205ENST00000465727 SHOX2O60902 331 aaPredicted RBP22.28■■□□□ 1.16
SDF4-205ENST00000465727 GUCY1A2P33402 732 aa22.28■■□□□ 1.16
SDF4-205ENST00000465727 CKAP4Q07065 602 aaKnown RBP22.28■■□□□ 1.16
SDF4-205ENST00000465727 RTN1Q16799 776 aa22.28■■□□□ 1.16
SDF4-205ENST00000465727 NCAPH2Q6IBW4 605 aa22.28■■□□□ 1.16
SDF4-205ENST00000465727 PI16Q6UXB8 463 aa22.28■■□□□ 1.16
SDF4-205ENST00000465727 SUGP1Q8IWZ8 645 aaKnown RBP22.28■■□□□ 1.16
SDF4-205ENST00000465727 NUP88Q99567 741 aaPredicted RBP22.28■■□□□ 1.16
SDF4-205ENST00000465727 KRT23Q9C075 422 aa22.28■■□□□ 1.16
SDF4-205ENST00000465727 UBR2Q8IWV8 1755 aa22.28■■□□□ 1.16
SDF4-205ENST00000465727 TFRCP02786 760 aaKnown RBP22.27■■□□□ 1.16
SDF4-205ENST00000465727 KRT31Q15323 416 aa22.27■■□□□ 1.16
SDF4-205ENST00000465727 USP49Q70CQ1 688 aa22.27■■□□□ 1.16
SDF4-205ENST00000465727 EHBP1Q8NDI1 1231 aa22.27■■□□□ 1.16
SDF4-205ENST00000465727 FERMT2Q96AC1 680 aa22.27■■□□□ 1.16
SDF4-205ENST00000465727 ZSWIM5Q9P217 1185 aa22.27■■□□□ 1.16
SDF4-205ENST00000465727 AKAP17AQ02040 695 aaKnown RBP22.27■■□□□ 1.16
SDF4-205ENST00000465727 SART3Q15020 963 aaKnown RBP22.27■■□□□ 1.16
SDF4-205ENST00000465727 TAF7LQ5H9L4 462 aa22.27■■□□□ 1.16
SDF4-205ENST00000465727 ZNF662Q6ZS27 426 aa22.27■■□□□ 1.16
SDF4-205ENST00000465727 TADA2BQ86TJ2 420 aa22.27■■□□□ 1.16
SDF4-205ENST00000465727 SMARCC1Q92922 1105 aaPredicted RBP22.27■■□□□ 1.16
SDF4-205ENST00000465727 TRIM75PA6NK02 468 aa22.26■■□□□ 1.15
SDF4-205ENST00000465727 ABL1P00519 1130 aa22.26■■□□□ 1.15
SDF4-205ENST00000465727 STIM1Q13586 685 aa22.26■■□□□ 1.15
SDF4-205ENST00000465727 CRACR2BQ8N4Y2 399 aaPredicted RBP22.26■■□□□ 1.15
SDF4-205ENST00000465727 PLA2G12BQ9BX93 195 aa22.26■■□□□ 1.15
SDF4-205ENST00000465727 CDHR2Q9BYE9 1310 aa22.26■■□□□ 1.15
SDF4-205ENST00000465727 RIC1Q4ADV7 1423 aa22.26■■□□□ 1.15
SDF4-205ENST00000465727 NDUFA10O95299 355 aa22.26■■□□□ 1.15
SDF4-205ENST00000465727 ATP2B1P20020 1258 aa22.26■■□□□ 1.15
SDF4-205ENST00000465727 AFMP43652 599 aa22.26■■□□□ 1.15
SDF4-205ENST00000465727 NR5A1Q13285 461 aa22.26■■□□□ 1.15
SDF4-205ENST00000465727 PAPD7Q5XG87 772 aaKnown RBP22.26■■□□□ 1.15
SDF4-205ENST00000465727 TMTC2Q8N394 836 aa22.26■■□□□ 1.15
SDF4-205ENST00000465727 SLF1Q9BQI6 1058 aa22.26■■□□□ 1.15
SDF4-205ENST00000465727 ISCA1Q9BUE6 129 aa22.26■■□□□ 1.15
SDF4-205ENST00000465727 DEF6Q9H4E7 631 aa22.26■■□□□ 1.15
SDF4-205ENST00000465727 RWDD2AQ9UIY3 292 aa22.26■■□□□ 1.15
SDF4-205ENST00000465727 SAR1BQ9Y6B6 198 aa22.26■■□□□ 1.15
SDF4-205ENST00000465727 EPN1Q9Y6I3 576 aaPredicted RBP22.26■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 11 ms