RNA–Protein interactions for RNA: ENST00000465039.5

LIMD1-203, Transcript of LIM domains containing 1, humanhuman

TSL 5

Gene LIMD1, Length 676 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1-203ENST00000465039 AGTPBP1Q9UPW5 1226 aa16.27■□□□□ 0.2
LIMD1-203ENST00000465039 U3KPZ7 1027 aaPredicted RBP16.27■□□□□ 0.2
LIMD1-203ENST00000465039 ZNF213O14771 459 aa16.26■□□□□ 0.19
LIMD1-203ENST00000465039 AKR1B1P15121 316 aa16.26■□□□□ 0.19
LIMD1-203ENST00000465039 GUCY1A2P33402 732 aa16.26■□□□□ 0.19
LIMD1-203ENST00000465039 RAB3GAP1Q15042 981 aa16.26■□□□□ 0.19
LIMD1-203ENST00000465039 KIAA1211Q6ZU35 1233 aa16.26■□□□□ 0.19
LIMD1-203ENST00000465039 NEDD1Q8NHV4 660 aa16.26■□□□□ 0.19
LIMD1-203ENST00000465039 LPAR1Q92633 364 aa16.26■□□□□ 0.19
LIMD1-203ENST00000465039 PARK7Q99497 189 aaKnown RBP16.26■□□□□ 0.19
LIMD1-203ENST00000465039 PRDM10Q9NQV6 1147 aa16.26■□□□□ 0.19
LIMD1-203ENST00000465039 TMOD4Q9NZQ9 345 aa16.26■□□□□ 0.19
LIMD1-203ENST00000465039 PNMA3Q9UL41 463 aa16.26■□□□□ 0.19
LIMD1-203ENST00000465039 IGKV6D-41A0A0C4DH26 115 aa16.25■□□□□ 0.19
LIMD1-203ENST00000465039 BTBD19C9JJ37 291 aa16.25■□□□□ 0.19
LIMD1-203ENST00000465039 MPHOSPH10O00566 681 aaKnown RBP16.25■□□□□ 0.19
LIMD1-203ENST00000465039 EPB41L2O43491 1005 aaKnown RBP16.25■□□□□ 0.19
LIMD1-203ENST00000465039 ICA1Q05084 483 aa16.25■□□□□ 0.19
LIMD1-203ENST00000465039 MTMR2Q13614 643 aa16.25■□□□□ 0.19
LIMD1-203ENST00000465039 SEPT2Q15019 361 aa16.25■□□□□ 0.19
LIMD1-203ENST00000465039 AKNAD1Q5T1N1 836 aa16.25■□□□□ 0.19
LIMD1-203ENST00000465039 USP17L2Q6R6M4 530 aa16.25■□□□□ 0.19
LIMD1-203ENST00000465039 MAP4K1Q92918 833 aa16.25■□□□□ 0.19
LIMD1-203ENST00000465039 FEZ1Q99689 392 aa16.25■□□□□ 0.19
LIMD1-203ENST00000465039 IL25Q9H293 177 aa16.25■□□□□ 0.19
LIMD1-203ENST00000465039 CNNM2Q9H8M5 875 aa16.25■□□□□ 0.19
LIMD1-203ENST00000465039 NYAP2Q9P242 653 aa16.25■□□□□ 0.19
LIMD1-203ENST00000465039 TMX2Q9Y320 296 aa16.25■□□□□ 0.19
LIMD1-203ENST00000465039 SMIM22K7EJ46 135 aa16.24■□□□□ 0.19
LIMD1-203ENST00000465039 FOXN1O15353 648 aa16.24■□□□□ 0.19
LIMD1-203ENST00000465039 EIF5BO60841 1220 aaKnown RBP16.24■□□□□ 0.19
LIMD1-203ENST00000465039 TRPA1O75762 1119 aa16.24■□□□□ 0.19
LIMD1-203ENST00000465039 HSPA8P11142 646 aaKnown RBP16.24■□□□□ 0.19
LIMD1-203ENST00000465039 HOXA7P31268 230 aaPredicted RBP16.24■□□□□ 0.19
LIMD1-203ENST00000465039 MFSD6Q6ZSS7 791 aa16.24■□□□□ 0.19
LIMD1-203ENST00000465039 FAM43AQ8N2R8 423 aa16.24■□□□□ 0.19
LIMD1-203ENST00000465039 ZFYVE28Q9HCC9 887 aa16.24■□□□□ 0.19
LIMD1-203ENST00000465039 PDHXO00330 501 aa16.23■□□□□ 0.19
LIMD1-203ENST00000465039 TSPY3P0CV98 308 aa16.23■□□□□ 0.19
LIMD1-203ENST00000465039 TSPY8P0CW00 308 aa16.23■□□□□ 0.19
LIMD1-203ENST00000465039 NOVP48745 357 aa16.23■□□□□ 0.19
LIMD1-203ENST00000465039 HMGCS2P54868 508 aa16.23■□□□□ 0.19
LIMD1-203ENST00000465039 TAF1CQ15572 869 aaPredicted RBP16.23■□□□□ 0.19
LIMD1-203ENST00000465039 GPAT2Q6NUI2 795 aa16.23■□□□□ 0.19
LIMD1-203ENST00000465039 SKAP1Q86WV1 359 aa16.23■□□□□ 0.19
LIMD1-203ENST00000465039 GTF3C2Q8WUA4 911 aaPredicted RBP16.23■□□□□ 0.19
LIMD1-203ENST00000465039 GNL3Q9BVP2 549 aaKnown RBP eCLIP16.23■□□□□ 0.19
LIMD1-203ENST00000465039 TCP11L1Q9NUJ3 509 aa16.23■□□□□ 0.19
LIMD1-203ENST00000465039 ZBTB4Q9P1Z0 1013 aaPredicted RBP16.23■□□□□ 0.19
LIMD1-203ENST00000465039 FRMD4AQ9P2Q2 1039 aaPredicted RBP16.23■□□□□ 0.19
LIMD1-203ENST00000465039 TLR2O60603 784 aa16.22■□□□□ 0.19
LIMD1-203ENST00000465039 TTLL1O95922 423 aa16.22■□□□□ 0.19
LIMD1-203ENST00000465039 CRHR2Q13324 411 aa16.22■□□□□ 0.19
LIMD1-203ENST00000465039 SHROOM1Q2M3G4 852 aaPredicted RBP16.22■□□□□ 0.19
LIMD1-203ENST00000465039 CCDC178Q5BJE1 867 aa16.22■□□□□ 0.19
LIMD1-203ENST00000465039 CCDC84Q86UT8 332 aaPredicted RBP16.22■□□□□ 0.19
LIMD1-203ENST00000465039 ESR2Q92731 530 aa16.22■□□□□ 0.19
LIMD1-203ENST00000465039 MKL1Q969V6 931 aa16.22■□□□□ 0.19
LIMD1-203ENST00000465039 NBPF3Q9H094 633 aa16.22■□□□□ 0.19
LIMD1-203ENST00000465039 MTMR4Q9NYA4 1195 aa16.22■□□□□ 0.19
LIMD1-203ENST00000465039 ADGRA2Q96PE1 1338 aa16.21■□□□□ 0.19
LIMD1-203ENST00000465039 TSPY2A6NKD2 308 aa16.21■□□□□ 0.19
LIMD1-203ENST00000465039 PRDM1O75626 825 aa16.21■□□□□ 0.19
LIMD1-203ENST00000465039 REC8O95072 547 aa16.21■□□□□ 0.19
LIMD1-203ENST00000465039 GCLCP48506 637 aaPredicted RBP16.21■□□□□ 0.19
LIMD1-203ENST00000465039 TFAP4Q01664 338 aa16.21■□□□□ 0.19
LIMD1-203ENST00000465039 CTDSPL2Q05D32 466 aa16.21■□□□□ 0.19
LIMD1-203ENST00000465039 GADL1Q6ZQY3 521 aa16.21■□□□□ 0.19
LIMD1-203ENST00000465039 SIAH1Q8IUQ4 282 aa16.21■□□□□ 0.19
LIMD1-203ENST00000465039 TBC1D10CQ8IV04 446 aa16.21■□□□□ 0.19
LIMD1-203ENST00000465039 KRT23Q9C075 422 aa16.21■□□□□ 0.19
LIMD1-203ENST00000465039 LSG1Q9H089 658 aaKnown RBP16.21■□□□□ 0.19
LIMD1-203ENST00000465039 VCPKMTQ9H867 229 aa16.21■□□□□ 0.19
LIMD1-203ENST00000465039 GOPCQ9HD26 462 aa16.21■□□□□ 0.19
LIMD1-203ENST00000465039 EMILIN3Q9NT22 766 aa16.21■□□□□ 0.19
LIMD1-203ENST00000465039 MYPNQ86TC9 1320 aa16.2■□□□□ 0.18
LIMD1-203ENST00000465039 EEF2P13639 858 aaKnown RBP16.2■□□□□ 0.18
LIMD1-203ENST00000465039 VCAM1P19320 739 aa16.2■□□□□ 0.18
LIMD1-203ENST00000465039 OSBPP22059 807 aa16.2■□□□□ 0.18
LIMD1-203ENST00000465039 PTH1RQ03431 593 aa16.2■□□□□ 0.18
LIMD1-203ENST00000465039 GMCL1P1Q8NEA9 526 aa16.2■□□□□ 0.18
LIMD1-203ENST00000465039 ACER1Q8TDN7 264 aa16.2■□□□□ 0.18
LIMD1-203ENST00000465039 TTC14Q96N46 770 aa16.2■□□□□ 0.18
LIMD1-203ENST00000465039 A0A1W2PRG0 241 aa16.19■□□□□ 0.18
LIMD1-203ENST00000465039 USP17L15C9J2P7 530 aa16.19■□□□□ 0.18
LIMD1-203ENST00000465039 USP17L13C9JLJ4 530 aa16.19■□□□□ 0.18
LIMD1-203ENST00000465039 USP17L11C9JVI0 530 aa16.19■□□□□ 0.18
LIMD1-203ENST00000465039 USP17L18D6R9N7 530 aa16.19■□□□□ 0.18
LIMD1-203ENST00000465039 USP17L22D6RA61 530 aa16.19■□□□□ 0.18
LIMD1-203ENST00000465039 USP17L17D6RBQ6 530 aa16.19■□□□□ 0.18
LIMD1-203ENST00000465039 USP17L19D6RCP7 530 aa16.19■□□□□ 0.18
LIMD1-203ENST00000465039 USP17L20D6RJB6 530 aa16.19■□□□□ 0.18
LIMD1-203ENST00000465039 GPR25O00155 361 aa16.19■□□□□ 0.18
LIMD1-203ENST00000465039 WDR46O15213 610 aaKnown RBP16.19■□□□□ 0.18
LIMD1-203ENST00000465039 RANBP6O60518 1105 aaKnown RBP16.19■□□□□ 0.18
LIMD1-203ENST00000465039 HAND2P61296 217 aa16.19■□□□□ 0.18
LIMD1-203ENST00000465039 USP17L24Q0WX57 530 aa16.19■□□□□ 0.18
LIMD1-203ENST00000465039 RNF20Q5VTR2 975 aa16.19■□□□□ 0.18
LIMD1-203ENST00000465039 LBX2Q6XYB7 198 aa16.19■□□□□ 0.18
LIMD1-203ENST00000465039 CEP95Q96GE4 821 aa16.19■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 60.6 ms