RNA–Protein interactions for RNA: ENST00000462276.1

RTF1-202, Transcript of RTF1 homolog, Paf1/RNA polymerase II complex component, humanhuman

TSL 4

Gene RTF1, Length 485 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1-202ENST00000462276 CDAN1Q8IWY9 1227 aa12.5□□□□□ -0.41
RTF1-202ENST00000462276 CEP95Q96GE4 821 aa12.5□□□□□ -0.41
RTF1-202ENST00000462276 TCEANC2Q96MN5 208 aa12.5□□□□□ -0.41
RTF1-202ENST00000462276 GLIS2Q9BZE0 524 aaPredicted RBP12.5□□□□□ -0.41
RTF1-202ENST00000462276 KAT14Q9H8E8 782 aa12.5□□□□□ -0.41
RTF1-202ENST00000462276 PICK1Q9NRD5 415 aa12.5□□□□□ -0.41
RTF1-202ENST00000462276 ZBTB21Q9ULJ3 1066 aa12.5□□□□□ -0.41
RTF1-202ENST00000462276 STX8Q9UNK0 236 aa12.5□□□□□ -0.41
RTF1-202ENST00000462276 FAM196BA6NMK8 535 aa12.49□□□□□ -0.41
RTF1-202ENST00000462276 ZBTB43O43298 467 aa12.49□□□□□ -0.41
RTF1-202ENST00000462276 USP2O75604 605 aaPredicted RBP12.49□□□□□ -0.41
RTF1-202ENST00000462276 PDIA3P30101 505 aaKnown RBP12.49□□□□□ -0.41
RTF1-202ENST00000462276 ICA1Q05084 483 aa12.49□□□□□ -0.41
RTF1-202ENST00000462276 MAP1SQ66K74 1059 aaPredicted RBP12.49□□□□□ -0.41
RTF1-202ENST00000462276 RCSD1Q6JBY9 416 aa12.49□□□□□ -0.41
RTF1-202ENST00000462276 CPLX2Q6PUV4 134 aaKnown RBP12.49□□□□□ -0.41
RTF1-202ENST00000462276 APOA5Q6Q788 366 aa12.49□□□□□ -0.41
RTF1-202ENST00000462276 SCYL3Q8IZE3 742 aa12.49□□□□□ -0.41
RTF1-202ENST00000462276 DDX55Q8NHQ9 600 aaKnown RBP eCLIP12.49□□□□□ -0.41
RTF1-202ENST00000462276 ZNF526Q8TF50 670 aaPredicted RBP12.49□□□□□ -0.41
RTF1-202ENST00000462276 INTS4Q96HW7 963 aaKnown RBP12.49□□□□□ -0.41
RTF1-202ENST00000462276 TMX3Q96JJ7 454 aa12.49□□□□□ -0.41
RTF1-202ENST00000462276 WRNIP1Q96S55 665 aa12.49□□□□□ -0.41
RTF1-202ENST00000462276 LRRC2Q9BYS8 371 aa12.49□□□□□ -0.41
RTF1-202ENST00000462276 SLKQ9H2G2 1235 aaPredicted RBP12.49□□□□□ -0.41
RTF1-202ENST00000462276 ARHGEF10LQ9HCE6 1279 aa12.49□□□□□ -0.41
RTF1-202ENST00000462276 TPCN1Q9ULQ1 816 aa12.49□□□□□ -0.41
RTF1-202ENST00000462276 SCAF8Q9UPN6 1271 aaKnown RBP12.49□□□□□ -0.41
RTF1-202ENST00000462276 CSADQ9Y600 493 aa12.49□□□□□ -0.41
RTF1-202ENST00000462276 KLF18A0A0U1RQI7 1052 aa12.48□□□□□ -0.41
RTF1-202ENST00000462276 USP17L5A8MUK1 530 aa12.48□□□□□ -0.41
RTF1-202ENST00000462276 PFKFB2O60825 505 aa12.48□□□□□ -0.41
RTF1-202ENST00000462276 KIF5BP33176 963 aa12.48□□□□□ -0.41
RTF1-202ENST00000462276 GNAQP50148 359 aa12.48□□□□□ -0.41
RTF1-202ENST00000462276 CUL4AQ13619 759 aa12.48□□□□□ -0.41
RTF1-202ENST00000462276 COL9A3Q14050 684 aaPredicted RBP12.48□□□□□ -0.41
RTF1-202ENST00000462276 SEPT2Q15019 361 aa12.48□□□□□ -0.41
RTF1-202ENST00000462276 RAB3GAP1Q15042 981 aa12.48□□□□□ -0.41
RTF1-202ENST00000462276 PRAMEF18Q5VWM3 479 aa12.48□□□□□ -0.41
RTF1-202ENST00000462276 ANKRD13AQ8IZ07 590 aa12.48□□□□□ -0.41
RTF1-202ENST00000462276 NKX2-3Q8TAU0 364 aa12.48□□□□□ -0.41
RTF1-202ENST00000462276 IPO9Q96P70 1041 aaKnown RBP12.48□□□□□ -0.41
RTF1-202ENST00000462276 TMEM47Q9BQJ4 181 aa12.48□□□□□ -0.41
RTF1-202ENST00000462276 ZKSCAN3Q9BRR0 538 aa12.48□□□□□ -0.41
RTF1-202ENST00000462276 LLPHQ9BRT6 129 aaKnown RBP12.48□□□□□ -0.41
RTF1-202ENST00000462276 WDR18Q9BV38 432 aa12.48□□□□□ -0.41
RTF1-202ENST00000462276 AS3MTQ9HBK9 375 aa12.48□□□□□ -0.41
RTF1-202ENST00000462276 CLIP2Q9UDT6 1046 aa12.48□□□□□ -0.41
RTF1-202ENST00000462276 DDX60LQ5H9U9 1706 aaKnown RBP12.48□□□□□ -0.41
RTF1-202ENST00000462276 NMT2O60551 498 aa12.47□□□□□ -0.41
RTF1-202ENST00000462276 GDF11O95390 407 aa12.47□□□□□ -0.41
RTF1-202ENST00000462276 CD2BP2O95400 341 aaKnown RBP12.47□□□□□ -0.41
RTF1-202ENST00000462276 ITGBL1O95965 494 aaPredicted RBP12.47□□□□□ -0.41
RTF1-202ENST00000462276 POTEIP0CG38 1075 aa12.47□□□□□ -0.41
RTF1-202ENST00000462276 POTEJP0CG39 1038 aa12.47□□□□□ -0.41
RTF1-202ENST00000462276 PDIA4P13667 645 aaKnown RBP12.47□□□□□ -0.41
RTF1-202ENST00000462276 GUCY1A2P33402 732 aa12.47□□□□□ -0.41
RTF1-202ENST00000462276 APOBRQ0VD83 1088 aa12.47□□□□□ -0.41
RTF1-202ENST00000462276 TROAPQ12815 778 aa12.47□□□□□ -0.41
RTF1-202ENST00000462276 RRP1BQ14684 758 aaKnown RBP12.47□□□□□ -0.41
RTF1-202ENST00000462276 LDLRAD1Q5T700 205 aa12.47□□□□□ -0.41
RTF1-202ENST00000462276 ZNF654Q8IZM8 581 aa12.47□□□□□ -0.41
RTF1-202ENST00000462276 C2orf69Q8N8R5 385 aa12.47□□□□□ -0.41
RTF1-202ENST00000462276 FANCBQ8NB91 859 aa12.47□□□□□ -0.41
RTF1-202ENST00000462276 PNMA1Q8ND90 353 aa12.47□□□□□ -0.41
RTF1-202ENST00000462276 SMC1BQ8NDV3 1235 aa12.47□□□□□ -0.41
RTF1-202ENST00000462276 GMCL1P1Q8NEA9 526 aa12.47□□□□□ -0.41
RTF1-202ENST00000462276 RBM46Q8TBY0 533 aaKnown RBP12.47□□□□□ -0.41
RTF1-202ENST00000462276 LZTS2Q9BRK4 669 aa12.47□□□□□ -0.41
RTF1-202ENST00000462276 RBM28Q9NW13 759 aaKnown RBP12.47□□□□□ -0.41
RTF1-202ENST00000462276 BRPF3Q9ULD4 1205 aa12.47□□□□□ -0.41
RTF1-202ENST00000462276 TMX2Q9Y320 296 aa12.47□□□□□ -0.41
RTF1-202ENST00000462276 ZSCAN21Q9Y5A6 473 aaPredicted RBP12.47□□□□□ -0.41
RTF1-202ENST00000462276 ADAMTSL1Q8N6G6 1762 aa12.47□□□□□ -0.41
RTF1-202ENST00000462276 NAV1Q8NEY1 1877 aa12.46□□□□□ -0.41
RTF1-202ENST00000462276 FOCADQ5VW36 1801 aa12.46□□□□□ -0.41
RTF1-202ENST00000462276 GOLGA8BA8MQT2 603 aa12.46□□□□□ -0.41
RTF1-202ENST00000462276 KIF3CO14782 793 aa12.46□□□□□ -0.41
RTF1-202ENST00000462276 CDKL5O76039 1030 aa12.46□□□□□ -0.41
RTF1-202ENST00000462276 TOMM70O94826 608 aa12.46□□□□□ -0.41
RTF1-202ENST00000462276 HSP90AA1P07900 732 aaKnown RBP12.46□□□□□ -0.41
RTF1-202ENST00000462276 EEF2P13639 858 aaKnown RBP12.46□□□□□ -0.41
RTF1-202ENST00000462276 SMARCA1P28370 1054 aa12.46□□□□□ -0.41
RTF1-202ENST00000462276 INPP5BP32019 993 aa12.46□□□□□ -0.41
RTF1-202ENST00000462276 METAP2P50579 478 aaKnown RBP eCLIP12.46□□□□□ -0.41
RTF1-202ENST00000462276 USP14P54578 494 aa12.46□□□□□ -0.41
RTF1-202ENST00000462276 TTLL12Q14166 644 aaPredicted RBP12.46□□□□□ -0.41
RTF1-202ENST00000462276 ME3Q16798 604 aa12.46□□□□□ -0.41
RTF1-202ENST00000462276 CTCFLQ8NI51 663 aaPredicted RBP12.46□□□□□ -0.41
RTF1-202ENST00000462276 GTF3C6Q969F1 213 aa12.46□□□□□ -0.41
RTF1-202ENST00000462276 KIAA1683Q9H0B3 1180 aa12.46□□□□□ -0.41
RTF1-202ENST00000462276 CWC22Q9HCG8 908 aaKnown RBP12.46□□□□□ -0.41
RTF1-202ENST00000462276 GOPCQ9HD26 462 aa12.46□□□□□ -0.41
RTF1-202ENST00000462276 GPHNQ9NQX3 736 aaPredicted RBP12.46□□□□□ -0.41
RTF1-202ENST00000462276 BAZ2AQ9UIF9 1905 aaKnown RBP12.46□□□□□ -0.42
RTF1-202ENST00000462276 LAMA4Q16363 1823 aa12.46□□□□□ -0.42
RTF1-202ENST00000462276 NID2Q14112 1375 aa12.45□□□□□ -0.42
RTF1-202ENST00000462276 MYH1P12882 1939 aa12.45□□□□□ -0.42
RTF1-202ENST00000462276 C19orf81C9J6K1 198 aa12.45□□□□□ -0.42
RTF1-202ENST00000462276 CPLX1O14810 134 aa12.45□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 150.6 ms