RNA–Protein interactions for RNA: ENST00000461743.1

VPS52-213, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 3

Gene VPS52, Length 547 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-213ENST00000461743 MINDY4BA8MYZ0 360 aa14.12□□□□□ -0.15
VPS52-213ENST00000461743 PDHXO00330 501 aa14.12□□□□□ -0.15
VPS52-213ENST00000461743 MPHOSPH10O00566 681 aaKnown RBP14.12□□□□□ -0.15
VPS52-213ENST00000461743 TLR2O60603 784 aa14.12□□□□□ -0.15
VPS52-213ENST00000461743 FKTNO75072 461 aa14.12□□□□□ -0.15
VPS52-213ENST00000461743 HMGCS2P54868 508 aa14.12□□□□□ -0.15
VPS52-213ENST00000461743 JAG1P78504 1218 aa14.12□□□□□ -0.15
VPS52-213ENST00000461743 PPARAQ07869 468 aa14.12□□□□□ -0.15
VPS52-213ENST00000461743 RAB3GAP1Q15042 981 aa14.12□□□□□ -0.15
VPS52-213ENST00000461743 BMP2KLQ5H9B9 411 aa14.12□□□□□ -0.15
VPS52-213ENST00000461743 GPAT2Q6NUI2 795 aa14.12□□□□□ -0.15
VPS52-213ENST00000461743 USP17L2Q6R6M4 530 aa14.12□□□□□ -0.15
VPS52-213ENST00000461743 CWC27Q6UX04 472 aaKnown RBP14.12□□□□□ -0.15
VPS52-213ENST00000461743 CCDC84Q86UT8 332 aaPredicted RBP14.12□□□□□ -0.15
VPS52-213ENST00000461743 FEZ1Q99689 392 aa14.12□□□□□ -0.15
VPS52-213ENST00000461743 KIAA1683Q9H0B3 1180 aa14.12□□□□□ -0.15
VPS52-213ENST00000461743 ARHGEF10LQ9HCE6 1279 aa14.12□□□□□ -0.15
VPS52-213ENST00000461743 PPP4R2Q9NY27 417 aa14.12□□□□□ -0.15
VPS52-213ENST00000461743 TMOD4Q9NZQ9 345 aa14.12□□□□□ -0.15
VPS52-213ENST00000461743 PCP11498 1178 aaKnown RBP14.11□□□□□ -0.15
VPS52-213ENST00000461743 AKR1B1P15121 316 aa14.11□□□□□ -0.15
VPS52-213ENST00000461743 GUCY1A2P33402 732 aa14.11□□□□□ -0.15
VPS52-213ENST00000461743 ICA1Q05084 483 aa14.11□□□□□ -0.15
VPS52-213ENST00000461743 SEPT2Q15019 361 aa14.11□□□□□ -0.15
VPS52-213ENST00000461743 SHROOM1Q2M3G4 852 aaPredicted RBP14.11□□□□□ -0.15
VPS52-213ENST00000461743 PPP4R3BQ5MIZ7 849 aa14.11□□□□□ -0.15
VPS52-213ENST00000461743 DOCK3Q8IZD9 2030 aa14.11□□□□□ -0.15
VPS52-213ENST00000461743 GTF3C2Q8WUA4 911 aaPredicted RBP14.11□□□□□ -0.15
VPS52-213ENST00000461743 ZNF296Q8WUU4 475 aaPredicted RBP14.11□□□□□ -0.15
VPS52-213ENST00000461743 ERO1AQ96HE7 468 aa14.11□□□□□ -0.15
VPS52-213ENST00000461743 DSCC1Q9BVC3 393 aa14.11□□□□□ -0.15
VPS52-213ENST00000461743 MKNK2Q9HBH9 465 aa14.11□□□□□ -0.15
VPS52-213ENST00000461743 RBBP6Q7Z6E9 1792 aaKnown RBP14.1□□□□□ -0.15
VPS52-213ENST00000461743 RASA1P20936 1047 aa14.1□□□□□ -0.15
VPS52-213ENST00000461743 HOXA7P31268 230 aaPredicted RBP14.1□□□□□ -0.15
VPS52-213ENST00000461743 VPS53Q5VIR6 699 aa14.1□□□□□ -0.15
VPS52-213ENST00000461743 KANSL2Q9H9L4 492 aa14.1□□□□□ -0.15
VPS52-213ENST00000461743 SYNPO2Q9UMS6 1093 aa14.1□□□□□ -0.15
VPS52-213ENST00000461743 HTTP42858 3142 aa14.1□□□□□ -0.15
VPS52-213ENST00000461743 FGAP02671 866 aa14.09□□□□□ -0.15
VPS52-213ENST00000461743 CHMLP26374 656 aa14.09□□□□□ -0.15
VPS52-213ENST00000461743 SP3Q02447 781 aa14.09□□□□□ -0.15
VPS52-213ENST00000461743 ARHGEF6Q15052 776 aa14.09□□□□□ -0.15
VPS52-213ENST00000461743 TREML2Q5T2D2 321 aa14.09□□□□□ -0.15
VPS52-213ENST00000461743 COL13A1Q5TAT6 717 aaPredicted RBP14.09□□□□□ -0.15
VPS52-213ENST00000461743 CTU1Q7Z7A3 348 aaKnown RBP14.09□□□□□ -0.15
VPS52-213ENST00000461743 LPAR1Q92633 364 aa14.09□□□□□ -0.15
VPS52-213ENST00000461743 R3HDMLQ9H3Y0 253 aa14.09□□□□□ -0.15
VPS52-213ENST00000461743 DDX52Q9Y2R4 599 aaKnown RBP eCLIP14.09□□□□□ -0.15
VPS52-213ENST00000461743 PLXNB2O15031 1838 aa14.08□□□□□ -0.15
VPS52-213ENST00000461743 SMIM22K7EJ46 135 aa14.08□□□□□ -0.16
VPS52-213ENST00000461743 ORC4O43929 436 aa14.08□□□□□ -0.16
VPS52-213ENST00000461743 FGRP09769 529 aa14.08□□□□□ -0.16
VPS52-213ENST00000461743 OSBPP22059 807 aa14.08□□□□□ -0.16
VPS52-213ENST00000461743 GCLCP48506 637 aaPredicted RBP14.08□□□□□ -0.16
VPS52-213ENST00000461743 PKN2Q16513 984 aaKnown RBP14.08□□□□□ -0.16
VPS52-213ENST00000461743 C17orf99Q6UX52 265 aa14.08□□□□□ -0.16
VPS52-213ENST00000461743 ZNF444Q8N0Y2 327 aaPredicted RBP14.08□□□□□ -0.16
VPS52-213ENST00000461743 SMCR8Q8TEV9 937 aaPredicted RBP14.08□□□□□ -0.16
VPS52-213ENST00000461743 RNF41Q9H4P4 317 aaPredicted RBP14.08□□□□□ -0.16
VPS52-213ENST00000461743 EMILIN3Q9NT22 766 aa14.08□□□□□ -0.16
VPS52-213ENST00000461743 CTNNA3Q9UI47 895 aa14.08□□□□□ -0.16
VPS52-213ENST00000461743 TMX2Q9Y320 296 aa14.08□□□□□ -0.16
VPS52-213ENST00000461743 ZNF236Q9UL36 1845 aa14.08□□□□□ -0.16
VPS52-213ENST00000461743 IGKV6D-41A0A0C4DH26 115 aa14.07□□□□□ -0.16
VPS52-213ENST00000461743 GNRH1P01148 92 aa14.07□□□□□ -0.16
VPS52-213ENST00000461743 BCRP11274 1271 aa14.07□□□□□ -0.16
VPS52-213ENST00000461743 VCAM1P19320 739 aa14.07□□□□□ -0.16
VPS52-213ENST00000461743 IRX3P78415 501 aaPredicted RBP14.07□□□□□ -0.16
VPS52-213ENST00000461743 FAM110CQ1W6H9 321 aa14.07□□□□□ -0.16
VPS52-213ENST00000461743 NEDD1Q8NHV4 660 aa14.07□□□□□ -0.16
VPS52-213ENST00000461743 ACER1Q8TDN7 264 aa14.07□□□□□ -0.16
VPS52-213ENST00000461743 STAG1Q8WVM7 1258 aa14.07□□□□□ -0.16
VPS52-213ENST00000461743 GOPCQ9HD26 462 aa14.07□□□□□ -0.16
VPS52-213ENST00000461743 NYAP2Q9P242 653 aa14.07□□□□□ -0.16
VPS52-213ENST00000461743 MYH6P13533 1939 aa14.06□□□□□ -0.16
VPS52-213ENST00000461743 USP17L15C9J2P7 530 aa14.06□□□□□ -0.16
VPS52-213ENST00000461743 USP17L13C9JLJ4 530 aa14.06□□□□□ -0.16
VPS52-213ENST00000461743 USP17L11C9JVI0 530 aa14.06□□□□□ -0.16
VPS52-213ENST00000461743 USP17L18D6R9N7 530 aa14.06□□□□□ -0.16
VPS52-213ENST00000461743 USP17L22D6RA61 530 aa14.06□□□□□ -0.16
VPS52-213ENST00000461743 USP17L17D6RBQ6 530 aa14.06□□□□□ -0.16
VPS52-213ENST00000461743 USP17L19D6RCP7 530 aa14.06□□□□□ -0.16
VPS52-213ENST00000461743 USP17L20D6RJB6 530 aa14.06□□□□□ -0.16
VPS52-213ENST00000461743 SGSM2O43147 1006 aa14.06□□□□□ -0.16
VPS52-213ENST00000461743 TSPY3P0CV98 308 aa14.06□□□□□ -0.16
VPS52-213ENST00000461743 TSPY8P0CW00 308 aa14.06□□□□□ -0.16
VPS52-213ENST00000461743 CYP2C8P10632 490 aa14.06□□□□□ -0.16
VPS52-213ENST00000461743 USP17L24Q0WX57 530 aa14.06□□□□□ -0.16
VPS52-213ENST00000461743 KIF22Q14807 665 aa14.06□□□□□ -0.16
VPS52-213ENST00000461743 ASCC2Q9H1I8 757 aaPredicted RBP14.06□□□□□ -0.16
VPS52-213ENST00000461743 VCPKMTQ9H867 229 aa14.06□□□□□ -0.16
VPS52-213ENST00000461743 A0A1W2PRG0 241 aa14.05□□□□□ -0.16
VPS52-213ENST00000461743 WDR46O15213 610 aaKnown RBP14.05□□□□□ -0.16
VPS52-213ENST00000461743 PRDM1O75626 825 aa14.05□□□□□ -0.16
VPS52-213ENST00000461743 TTLL1O95922 423 aa14.05□□□□□ -0.16
VPS52-213ENST00000461743 LACTBP83111 547 aaPredicted RBP14.05□□□□□ -0.16
VPS52-213ENST00000461743 CTDSPL2Q05D32 466 aa14.05□□□□□ -0.16
VPS52-213ENST00000461743 IMMTQ16891 758 aaKnown RBP14.05□□□□□ -0.16
VPS52-213ENST00000461743 AKNAD1Q5T1N1 836 aa14.05□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms