RNA–Protein interactions for RNA: ENST00000449264.2

TNF-208, Transcript of tumor necrosis factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TNF, Length 1,676 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNF-208ENST00000449264 LIFRP42702 1097 aa17.16■□□□□ 0.34
TNF-208ENST00000449264 ATP2B2Q01814 1243 aa17.16■□□□□ 0.34
TNF-208ENST00000449264 ME3Q16798 604 aa17.16■□□□□ 0.34
TNF-208ENST00000449264 CCDC178Q5BJE1 867 aa17.16■□□□□ 0.34
TNF-208ENST00000449264 TMEM179Q6ZVK1 233 aa17.16■□□□□ 0.34
TNF-208ENST00000449264 WRNIP1Q96S55 665 aa17.16■□□□□ 0.34
TNF-208ENST00000449264 GPBP1L1Q9HC44 474 aaPredicted RBP17.16■□□□□ 0.34
TNF-208ENST00000449264 PHF20L1A8MW92 1017 aa17.15■□□□□ 0.34
TNF-208ENST00000449264 NF2P35240 595 aa17.15■□□□□ 0.34
TNF-208ENST00000449264 JAG1P78504 1218 aa17.15■□□□□ 0.34
TNF-208ENST00000449264 SEPT2Q15019 361 aa17.15■□□□□ 0.34
TNF-208ENST00000449264 RCSD1Q6JBY9 416 aa17.15■□□□□ 0.34
TNF-208ENST00000449264 SGMS1Q86VZ5 419 aa17.15■□□□□ 0.34
TNF-208ENST00000449264 MICU3Q86XE3 530 aa17.15■□□□□ 0.34
TNF-208ENST00000449264 IPO9Q96P70 1041 aaKnown RBP17.15■□□□□ 0.34
TNF-208ENST00000449264 MYL10Q9BUA6 226 aa17.15■□□□□ 0.34
TNF-208ENST00000449264 FRMD4AQ9P2Q2 1039 aaPredicted RBP17.15■□□□□ 0.34
TNF-208ENST00000449264 ZBTB21Q9ULJ3 1066 aa17.15■□□□□ 0.34
TNF-208ENST00000449264 SLC12A7Q9Y666 1083 aa17.15■□□□□ 0.34
TNF-208ENST00000449264 IGKV6D-41A0A0C4DH26 115 aa17.14■□□□□ 0.33
TNF-208ENST00000449264 TRAF5O00463 557 aa17.14■□□□□ 0.33
TNF-208ENST00000449264 RXRAP19793 462 aa17.14■□□□□ 0.33
TNF-208ENST00000449264 INPP5BP32019 993 aa17.14■□□□□ 0.33
TNF-208ENST00000449264 CAP2P40123 477 aa17.14■□□□□ 0.33
TNF-208ENST00000449264 ICA1Q05084 483 aa17.14■□□□□ 0.33
TNF-208ENST00000449264 SPRYD3Q8NCJ5 442 aa17.14■□□□□ 0.33
TNF-208ENST00000449264 ZSCAN31Q96LW9 406 aaPredicted RBP17.14■□□□□ 0.33
TNF-208ENST00000449264 KAT14Q9H8E8 782 aa17.14■□□□□ 0.33
TNF-208ENST00000449264 MTMR4Q9NYA4 1195 aa17.14■□□□□ 0.33
TNF-208ENST00000449264 TTLL1O95922 423 aa17.13■□□□□ 0.33
TNF-208ENST00000449264 HSP90AA1P07900 732 aaKnown RBP17.13■□□□□ 0.33
TNF-208ENST00000449264 GUCY1A2P33402 732 aa17.13■□□□□ 0.33
TNF-208ENST00000449264 APOA5Q6Q788 366 aa17.13■□□□□ 0.33
TNF-208ENST00000449264 DGKHQ86XP1 1220 aa17.13■□□□□ 0.33
TNF-208ENST00000449264 CCDC144CPQ8IYA2 1237 aa17.13■□□□□ 0.33
TNF-208ENST00000449264 ZNF654Q8IZM8 581 aa17.13■□□□□ 0.33
TNF-208ENST00000449264 TMTC2Q8N394 836 aa17.13■□□□□ 0.33
TNF-208ENST00000449264 NECAB1Q8N987 351 aa17.13■□□□□ 0.33
TNF-208ENST00000449264 ZNF408Q9H9D4 720 aa17.13■□□□□ 0.33
TNF-208ENST00000449264 SH2B1Q9NRF2 756 aaPredicted RBP17.13■□□□□ 0.33
TNF-208ENST00000449264 FOXD4L1Q9NU39 408 aa17.13■□□□□ 0.33
TNF-208ENST00000449264 MTMR7Q9Y216 660 aa17.13■□□□□ 0.33
TNF-208ENST00000449264 ZBTB43O43298 467 aa17.13■□□□□ 0.33
TNF-208ENST00000449264 CCT2P78371 535 aaKnown RBP17.13■□□□□ 0.33
TNF-208ENST00000449264 TTLL12Q14166 644 aaPredicted RBP17.13■□□□□ 0.33
TNF-208ENST00000449264 SYNE3Q6ZMZ3 975 aa17.13■□□□□ 0.33
TNF-208ENST00000449264 CATIPQ7Z7H3 387 aa17.13■□□□□ 0.33
TNF-208ENST00000449264 CCDC83Q8IWF9 413 aa17.13■□□□□ 0.33
TNF-208ENST00000449264 LRRC47Q8N1G4 583 aaKnown RBP17.13■□□□□ 0.33
TNF-208ENST00000449264 NUP133Q8WUM0 1156 aa17.13■□□□□ 0.33
TNF-208ENST00000449264 CHMP4CQ96CF2 233 aa17.13■□□□□ 0.33
TNF-208ENST00000449264 TMEM47Q9BQJ4 181 aa17.13■□□□□ 0.33
TNF-208ENST00000449264 SLKQ9H2G2 1235 aaPredicted RBP17.13■□□□□ 0.33
TNF-208ENST00000449264 KANSL2Q9H9L4 492 aa17.13■□□□□ 0.33
TNF-208ENST00000449264 PAPPA2Q9BXP8 1791 aa17.12■□□□□ 0.33
TNF-208ENST00000449264 PPP1R12BO60237 982 aaPredicted RBP17.12■□□□□ 0.33
TNF-208ENST00000449264 ASNSP08243 561 aa17.12■□□□□ 0.33
TNF-208ENST00000449264 PDIA3P30101 505 aaKnown RBP17.12■□□□□ 0.33
TNF-208ENST00000449264 EVCP57679 992 aa17.12■□□□□ 0.33
TNF-208ENST00000449264 FMR1Q06787 632 aaKnown RBP eCLIP17.12■□□□□ 0.33
TNF-208ENST00000449264 CCDC84Q86UT8 332 aaPredicted RBP17.12■□□□□ 0.33
TNF-208ENST00000449264 PNMA1Q8ND90 353 aa17.12■□□□□ 0.33
TNF-208ENST00000449264 ZKSCAN4Q969J2 545 aaPredicted RBP17.12■□□□□ 0.33
TNF-208ENST00000449264 KLRG1Q96E93 195 aa17.12■□□□□ 0.33
TNF-208ENST00000449264 ZNF274Q96GC6 653 aaPredicted RBP17.12■□□□□ 0.33
TNF-208ENST00000449264 ZBTB4Q9P1Z0 1013 aaPredicted RBP17.12■□□□□ 0.33
TNF-208ENST00000449264 CLIP2Q9UDT6 1046 aa17.12■□□□□ 0.33
TNF-208ENST00000449264 GOLGA8AA7E2F4 631 aa17.11■□□□□ 0.33
TNF-208ENST00000449264 CTNND1O60716 968 aaKnown RBP17.11■□□□□ 0.33
TNF-208ENST00000449264 TOP1P11387 765 aaKnown RBP17.11■□□□□ 0.33
TNF-208ENST00000449264 EEF2P13639 858 aaKnown RBP17.11■□□□□ 0.33
TNF-208ENST00000449264 METAP2P50579 478 aaKnown RBP eCLIP17.11■□□□□ 0.33
TNF-208ENST00000449264 GTF3C6Q969F1 213 aa17.11■□□□□ 0.33
TNF-208ENST00000449264 NCOA5Q9HCD5 579 aaKnown RBP17.11■□□□□ 0.33
TNF-208ENST00000449264 HPS5Q9UPZ3 1129 aa17.11■□□□□ 0.33
TNF-208ENST00000449264 RAD21O60216 631 aa17.1■□□□□ 0.33
TNF-208ENST00000449264 PFKFB2O60825 505 aa17.1■□□□□ 0.33
TNF-208ENST00000449264 USP2O75604 605 aaPredicted RBP17.1■□□□□ 0.33
TNF-208ENST00000449264 ST3GAL1Q11201 340 aa17.1■□□□□ 0.33
TNF-208ENST00000449264 SCRN1Q12765 414 aa17.1■□□□□ 0.33
TNF-208ENST00000449264 PPP4R3BQ5MIZ7 849 aa17.1■□□□□ 0.33
TNF-208ENST00000449264 CHADLQ6NUI6 762 aa17.1■□□□□ 0.33
TNF-208ENST00000449264 SCYL3Q8IZE3 742 aa17.1■□□□□ 0.33
TNF-208ENST00000449264 ANKS1AQ92625 1134 aa17.1■□□□□ 0.33
TNF-208ENST00000449264 ZNF112Q9UJU3 913 aa17.1■□□□□ 0.33
TNF-208ENST00000449264 DDAH1O94760 285 aa17.1■□□□□ 0.33
TNF-208ENST00000449264 IREB2P48200 963 aaKnown RBP17.1■□□□□ 0.33
TNF-208ENST00000449264 NOVP48745 357 aa17.1■□□□□ 0.33
TNF-208ENST00000449264 MOB2Q70IA6 237 aa17.1■□□□□ 0.33
TNF-208ENST00000449264 RASGRP2Q7LDG7 609 aa17.1■□□□□ 0.33
TNF-208ENST00000449264 DDX55Q8NHQ9 600 aaKnown RBP eCLIP17.1■□□□□ 0.33
TNF-208ENST00000449264 PICK1Q9NRD5 415 aa17.1■□□□□ 0.33
TNF-208ENST00000449264 DTNBO60941 627 aa17.09■□□□□ 0.33
TNF-208ENST00000449264 ARHGEF10LQ9HCE6 1279 aa17.09■□□□□ 0.33
TNF-208ENST00000449264 NYAP2Q9P242 653 aa17.09■□□□□ 0.33
TNF-208ENST00000449264 TRPM7Q96QT4 1865 aa17.09■□□□□ 0.33
TNF-208ENST00000449264 TROAPQ12815 778 aa17.08■□□□□ 0.32
TNF-208ENST00000449264 CUL4AQ13619 759 aa17.08■□□□□ 0.32
TNF-208ENST00000449264 VGLL4Q14135 290 aa17.08■□□□□ 0.32
TNF-208ENST00000449264 RTN1Q16799 776 aa17.08■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms