RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 MIGA1Q8NAN2 632 aa8.56□□□□□ -1.04
VPS41-208ENST00000448833 UNC93B1Q9H1C4 597 aa8.56□□□□□ -1.04
VPS41-208ENST00000448833 CWC22Q9HCG8 908 aaKnown RBP8.56□□□□□ -1.04
VPS41-208ENST00000448833 PAK6Q9NQU5 681 aaPredicted RBP8.56□□□□□ -1.04
VPS41-208ENST00000448833 TLR7Q9NYK1 1049 aaKnown RBP8.56□□□□□ -1.04
VPS41-208ENST00000448833 RCAN3Q9UKA8 241 aa8.56□□□□□ -1.04
VPS41-208ENST00000448833 NAV1Q8NEY1 1877 aa8.55□□□□□ -1.04
VPS41-208ENST00000448833 GDF11O95390 407 aa8.55□□□□□ -1.04
VPS41-208ENST00000448833 GH2P01242 217 aa8.55□□□□□ -1.04
VPS41-208ENST00000448833 SLURP2P0DP57 97 aa8.55□□□□□ -1.04
VPS41-208ENST00000448833 ELNP15502 786 aa8.55□□□□□ -1.04
VPS41-208ENST00000448833 ATP5JP18859 108 aa8.55□□□□□ -1.04
VPS41-208ENST00000448833 RRP1BQ14684 758 aaKnown RBP8.55□□□□□ -1.04
VPS41-208ENST00000448833 RAB3GAP1Q15042 981 aa8.55□□□□□ -1.04
VPS41-208ENST00000448833 NECAB2Q7Z6G3 386 aa8.55□□□□□ -1.04
VPS41-208ENST00000448833 UBE2Q1Q7Z7E8 422 aa8.55□□□□□ -1.04
VPS41-208ENST00000448833 IFNLR1Q8IU57 520 aaPredicted RBP8.55□□□□□ -1.04
VPS41-208ENST00000448833 C12orf42Q96LP6 360 aa8.55□□□□□ -1.04
VPS41-208ENST00000448833 DEFB118Q96PH6 123 aa8.55□□□□□ -1.04
VPS41-208ENST00000448833 P2RX7Q99572 595 aaKnown RBP8.55□□□□□ -1.04
VPS41-208ENST00000448833 KIAA1683Q9H0B3 1180 aa8.55□□□□□ -1.04
VPS41-208ENST00000448833 CRISPLD2Q9H0B8 497 aa8.55□□□□□ -1.04
VPS41-208ENST00000448833 SH2D4AQ9H788 454 aa8.55□□□□□ -1.04
VPS41-208ENST00000448833 DNAJC18Q9H819 358 aa8.55□□□□□ -1.04
VPS41-208ENST00000448833 IL1RAPL2Q9NP60 686 aa8.55□□□□□ -1.04
VPS41-208ENST00000448833 ATP8A2Q9NTI2 1148 aa8.55□□□□□ -1.04
VPS41-208ENST00000448833 HOXC10Q9NYD6 342 aa8.55□□□□□ -1.04
VPS41-208ENST00000448833 FRMD4AQ9P2Q2 1039 aaPredicted RBP8.55□□□□□ -1.04
VPS41-208ENST00000448833 SWAP70Q9UH65 585 aa8.55□□□□□ -1.04
VPS41-208ENST00000448833 GJD2Q9UKL4 321 aa8.55□□□□□ -1.04
VPS41-208ENST00000448833 RABGAP1Q9Y3P9 1069 aa8.55□□□□□ -1.04
VPS41-208ENST00000448833 H0YGN5 161 aa8.54□□□□□ -1.04
VPS41-208ENST00000448833 GOLIM4O00461 696 aa8.54□□□□□ -1.04
VPS41-208ENST00000448833 EVI5O60447 810 aa8.54□□□□□ -1.04
VPS41-208ENST00000448833 PDE6AP16499 860 aa8.54□□□□□ -1.04
VPS41-208ENST00000448833 RGS2P41220 211 aa8.54□□□□□ -1.04
VPS41-208ENST00000448833 ERVK-9P63128 1117 aa8.54□□□□□ -1.04
VPS41-208ENST00000448833 ERVK-24P63145 666 aa8.54□□□□□ -1.04
VPS41-208ENST00000448833 SHISA4Q96DD7 197 aa8.54□□□□□ -1.04
VPS41-208ENST00000448833 GPATCH3Q96I76 525 aa8.54□□□□□ -1.04
VPS41-208ENST00000448833 CCDC17Q96LX7 622 aa8.54□□□□□ -1.04
VPS41-208ENST00000448833 DNAJC2Q99543 621 aaKnown RBP8.54□□□□□ -1.04
VPS41-208ENST00000448833 RIOK1Q9BRS2 568 aaKnown RBP8.54□□□□□ -1.04
VPS41-208ENST00000448833 LRRCC1Q9C099 1032 aa8.54□□□□□ -1.04
VPS41-208ENST00000448833 XRN2Q9H0D6 950 aaKnown RBP eCLIP8.54□□□□□ -1.04
VPS41-208ENST00000448833 ANTXR1Q9H6X2 564 aa8.54□□□□□ -1.04
VPS41-208ENST00000448833 EMILIN3Q9NT22 766 aa8.54□□□□□ -1.04
VPS41-208ENST00000448833 PAG1Q9NWQ8 432 aa8.54□□□□□ -1.04
VPS41-208ENST00000448833 MCM9Q9NXL9 1143 aa8.54□□□□□ -1.04
VPS41-208ENST00000448833 COG6Q9Y2V7 657 aa8.54□□□□□ -1.04
VPS41-208ENST00000448833 IVNS1ABPQ9Y6Y0 642 aa8.54□□□□□ -1.04
VPS41-208ENST00000448833 PLXNB2O15031 1838 aa8.54□□□□□ -1.04
VPS41-208ENST00000448833 CEP290O15078 2479 aa8.54□□□□□ -1.04
VPS41-208ENST00000448833 ZNF532Q9HCE3 1301 aa8.54□□□□□ -1.04
VPS41-208ENST00000448833 BAZ2AQ9UIF9 1905 aaKnown RBP8.53□□□□□ -1.04
VPS41-208ENST00000448833 A0A1W2PPC1 479 aa8.53□□□□□ -1.04
VPS41-208ENST00000448833 APBB1O00213 710 aa8.53□□□□□ -1.04
VPS41-208ENST00000448833 STRNO43815 780 aa8.53□□□□□ -1.04
VPS41-208ENST00000448833 FXR2P51116 673 aaKnown RBP eCLIP8.53□□□□□ -1.04
VPS41-208ENST00000448833 COG2Q14746 738 aa8.53□□□□□ -1.04
VPS41-208ENST00000448833 LRRFIP1Q32MZ4 808 aaKnown RBP8.53□□□□□ -1.04
VPS41-208ENST00000448833 LBX2Q6XYB7 198 aa8.53□□□□□ -1.04
VPS41-208ENST00000448833 CATSPERGQ6ZRH7 1159 aa8.53□□□□□ -1.04
VPS41-208ENST00000448833 TMEM179Q6ZVK1 233 aa8.53□□□□□ -1.04
VPS41-208ENST00000448833 PLEKHH3Q7Z736 793 aa8.53□□□□□ -1.04
VPS41-208ENST00000448833 PLCD3Q8N3E9 789 aa8.53□□□□□ -1.04
VPS41-208ENST00000448833 LPAR1Q92633 364 aa8.53□□□□□ -1.04
VPS41-208ENST00000448833 HAUS7Q99871 368 aa8.53□□□□□ -1.04
VPS41-208ENST00000448833 NBPF3Q9H094 633 aa8.53□□□□□ -1.04
VPS41-208ENST00000448833 ARHGEF10LQ9HCE6 1279 aa8.53□□□□□ -1.04
VPS41-208ENST00000448833 RBPJLQ9UBG7 517 aa8.53□□□□□ -1.04
VPS41-208ENST00000448833 COLQQ9Y215 455 aaPredicted RBP8.53□□□□□ -1.04
VPS41-208ENST00000448833 ZNFX1Q9P2E3 1918 aaKnown RBP8.52□□□□□ -1.04
VPS41-208ENST00000448833 DDX60LQ5H9U9 1706 aaKnown RBP8.52□□□□□ -1.05
VPS41-208ENST00000448833 TCRBV5S4A2TA0A5A2 114 aa8.52□□□□□ -1.05
VPS41-208ENST00000448833 SLC15A5A6NIM6 579 aa8.52□□□□□ -1.05
VPS41-208ENST00000448833 MPHOSPH10O00566 681 aaKnown RBP8.52□□□□□ -1.05
VPS41-208ENST00000448833 MSCO60682 206 aa8.52□□□□□ -1.05
VPS41-208ENST00000448833 ZKSCAN1P17029 563 aaPredicted RBP8.52□□□□□ -1.05
VPS41-208ENST00000448833 CYP2B6P20813 491 aa8.52□□□□□ -1.05
VPS41-208ENST00000448833 SHMT1P34896 483 aa8.52□□□□□ -1.05
VPS41-208ENST00000448833 ADD2P35612 726 aa8.52□□□□□ -1.05
VPS41-208ENST00000448833 PLCD1P51178 756 aa8.52□□□□□ -1.05
VPS41-208ENST00000448833 JAG1P78504 1218 aa8.52□□□□□ -1.05
VPS41-208ENST00000448833 GABPAQ06546 454 aa8.52□□□□□ -1.05
VPS41-208ENST00000448833 UBE3CQ15386 1083 aa8.52□□□□□ -1.05
VPS41-208ENST00000448833 MB21D1Q8N884 522 aa8.52□□□□□ -1.05
VPS41-208ENST00000448833 EDC3Q96F86 508 aaKnown RBP8.52□□□□□ -1.05
VPS41-208ENST00000448833 PAGR1Q9BTK6 254 aa8.52□□□□□ -1.05
VPS41-208ENST00000448833 DCP1AQ9NPI6 582 aaPredicted RBP8.52□□□□□ -1.05
VPS41-208ENST00000448833 SLC5A4Q9NY91 659 aa8.52□□□□□ -1.05
VPS41-208ENST00000448833 NDUFB9Q9Y6M9 179 aa8.52□□□□□ -1.05
VPS41-208ENST00000448833 ZFYP08048 801 aaPredicted RBP8.51□□□□□ -1.05
VPS41-208ENST00000448833 PRKAR2AP13861 404 aaKnown RBP8.51□□□□□ -1.05
VPS41-208ENST00000448833 VCAM1P19320 739 aa8.51□□□□□ -1.05
VPS41-208ENST00000448833 MAP2K5Q13163 448 aa8.51□□□□□ -1.05
VPS41-208ENST00000448833 ZYXQ15942 572 aaKnown RBP8.51□□□□□ -1.05
VPS41-208ENST00000448833 Q3C1V9 767 aa8.51□□□□□ -1.05
VPS41-208ENST00000448833 MORN1Q5T089 497 aa8.51□□□□□ -1.05
VPS41-208ENST00000448833 MAP3K21Q5TCX8 1036 aa8.51□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms