RNA–Protein interactions for RNA: ENST00000441602.5

VPS50-205, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 3,474 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-205ENST00000441602 SERPINB13Q9UIV8 391 aa6.95□□□□□ -1.3
VPS50-205ENST00000441602 STX8Q9UNK0 236 aa6.95□□□□□ -1.3
VPS50-205ENST00000441602 MYH2Q9UKX2 1941 aa6.95□□□□□ -1.3
VPS50-205ENST00000441602 MMP1P03956 469 aa6.95□□□□□ -1.3
VPS50-205ENST00000441602 PARP1P09874 1014 aaKnown RBP6.95□□□□□ -1.3
VPS50-205ENST00000441602 NASPP49321 788 aaPredicted RBP6.95□□□□□ -1.3
VPS50-205ENST00000441602 CEBPZQ03701 1054 aaKnown RBP6.95□□□□□ -1.3
VPS50-205ENST00000441602 OTUD7BQ6GQQ9 843 aa6.95□□□□□ -1.3
VPS50-205ENST00000441602 GALNT17Q6IS24 598 aa6.95□□□□□ -1.3
VPS50-205ENST00000441602 CDC42EP5Q6NZY7 148 aa6.95□□□□□ -1.3
VPS50-205ENST00000441602 FOXP4Q8IVH2 680 aaPredicted RBP6.95□□□□□ -1.3
VPS50-205ENST00000441602 DIS3L2Q8IYB7 885 aaKnown RBP6.95□□□□□ -1.3
VPS50-205ENST00000441602 CERS5Q8N5B7 392 aa6.95□□□□□ -1.3
VPS50-205ENST00000441602 JDP2Q8WYK2 163 aa6.95□□□□□ -1.3
VPS50-205ENST00000441602 MRPS27Q92552 414 aaKnown RBP6.95□□□□□ -1.3
VPS50-205ENST00000441602 CHAMP1Q96JM3 812 aa6.95□□□□□ -1.3
VPS50-205ENST00000441602 USP28Q96RU2 1077 aa6.95□□□□□ -1.3
VPS50-205ENST00000441602 DTNBO60941 627 aa6.94□□□□□ -1.3
VPS50-205ENST00000441602 ENTPD3O75355 529 aa6.94□□□□□ -1.3
VPS50-205ENST00000441602 NLRP5P59047 1200 aa6.94□□□□□ -1.3
VPS50-205ENST00000441602 TROAPQ12815 778 aa6.94□□□□□ -1.3
VPS50-205ENST00000441602 SLC4A8Q2Y0W8 1093 aa6.94□□□□□ -1.3
VPS50-205ENST00000441602 SASS6Q6UVJ0 657 aa6.94□□□□□ -1.3
VPS50-205ENST00000441602 OLFM4Q6UX06 510 aa6.94□□□□□ -1.3
VPS50-205ENST00000441602 NOSTRINQ8IVI9 506 aa6.94□□□□□ -1.3
VPS50-205ENST00000441602 CCAR1Q8IX12 1150 aaKnown RBP6.94□□□□□ -1.3
VPS50-205ENST00000441602 FSIP1Q8NA03 581 aa6.94□□□□□ -1.3
VPS50-205ENST00000441602 SH3GLB2Q9NR46 395 aa6.94□□□□□ -1.3
VPS50-205ENST00000441602 SEC63Q9UGP8 760 aaKnown RBP6.94□□□□□ -1.3
VPS50-205ENST00000441602 HOOK1Q9UJC3 728 aaKnown RBP6.94□□□□□ -1.3
VPS50-205ENST00000441602 MYO1BO43795 1136 aa6.94□□□□□ -1.3
VPS50-205ENST00000441602 PPFIA3O75145 1194 aa6.94□□□□□ -1.3
VPS50-205ENST00000441602 CAVIN2O95810 425 aa6.94□□□□□ -1.3
VPS50-205ENST00000441602 SCG2P13521 617 aa6.94□□□□□ -1.3
VPS50-205ENST00000441602 SMARCA1P28370 1054 aa6.94□□□□□ -1.3
VPS50-205ENST00000441602 DLGAP5Q15398 846 aa6.94□□□□□ -1.3
VPS50-205ENST00000441602 UVSSAQ2YD98 709 aa6.94□□□□□ -1.3
VPS50-205ENST00000441602 CCDC82Q8N4S0 544 aa6.94□□□□□ -1.3
VPS50-205ENST00000441602 GNL3Q9BVP2 549 aaKnown RBP eCLIP6.94□□□□□ -1.3
VPS50-205ENST00000441602 IDI2Q9BXS1 227 aa6.94□□□□□ -1.3
VPS50-205ENST00000441602 CLSTN2Q9H4D0 955 aa6.94□□□□□ -1.3
VPS50-205ENST00000441602 V9GY48 417 aaPredicted RBP6.94□□□□□ -1.3
VPS50-205ENST00000441602 PLIN4Q96Q06 1357 aa6.94□□□□□ -1.3
VPS50-205ENST00000441602 hCG_1984214I3L0E3 225 aa6.93□□□□□ -1.3
VPS50-205ENST00000441602 U2AF2P26368 475 aaKnown RBP eCLIP6.93□□□□□ -1.35e-6■■■□□ 19.2
VPS50-205ENST00000441602 TNIP1Q15025 636 aa6.93□□□□□ -1.3
VPS50-205ENST00000441602 ASPRV1Q53RT3 343 aa6.93□□□□□ -1.3
VPS50-205ENST00000441602 RSBN1LQ6PCB5 846 aaPredicted RBP6.93□□□□□ -1.3
VPS50-205ENST00000441602 SLC51AQ86UW1 340 aa6.93□□□□□ -1.3
VPS50-205ENST00000441602 ZNF713Q8N859 430 aaPredicted RBP6.93□□□□□ -1.3
VPS50-205ENST00000441602 CABP5Q9NP86 173 aa6.93□□□□□ -1.3
VPS50-205ENST00000441602 FAM13BQ9NYF5 915 aa6.93□□□□□ -1.3
VPS50-205ENST00000441602 PI4KBQ9UBF8 816 aa6.93□□□□□ -1.3
VPS50-205ENST00000441602 ZNRF3Q9ULT6 936 aa6.93□□□□□ -1.3
VPS50-205ENST00000441602 BAZ2AQ9UIF9 1905 aaKnown RBP6.93□□□□□ -1.3
VPS50-205ENST00000441602 CUTAO60888 179 aa6.93□□□□□ -1.3
VPS50-205ENST00000441602 PPP6R2O75170 966 aa6.93□□□□□ -1.3
VPS50-205ENST00000441602 WDHD1O75717 1129 aaPredicted RBP6.93□□□□□ -1.3
VPS50-205ENST00000441602 PLCD1P51178 756 aa6.93□□□□□ -1.3
VPS50-205ENST00000441602 FAM160A1Q05DH4 1040 aa6.93□□□□□ -1.3
VPS50-205ENST00000441602 CFAP100Q494V2 611 aa6.93□□□□□ -1.3
VPS50-205ENST00000441602 ADALQ6DHV7 355 aa6.93□□□□□ -1.3
VPS50-205ENST00000441602 AGBL3Q8NEM8 1001 aa6.93□□□□□ -1.3
VPS50-205ENST00000441602 TRIM44Q96DX7 344 aaPredicted RBP6.93□□□□□ -1.3
VPS50-205ENST00000441602 RRP36Q96EU6 259 aaKnown RBP6.93□□□□□ -1.3
VPS50-205ENST00000441602 TMEM47Q9BQJ4 181 aa6.93□□□□□ -1.3
VPS50-205ENST00000441602 TAOK3Q9H2K8 898 aa6.93□□□□□ -1.3
VPS50-205ENST00000441602 CD2APQ9Y5K6 639 aa6.93□□□□□ -1.3
VPS50-205ENST00000441602 TRIM75PA6NK02 468 aa6.93□□□□□ -1.3
VPS50-205ENST00000441602 MPHOSPH10O00566 681 aaKnown RBP6.93□□□□□ -1.3
VPS50-205ENST00000441602 ZBTB7AO95365 584 aa6.93□□□□□ -1.3
VPS50-205ENST00000441602 CCDC173Q0VFZ6 552 aa6.93□□□□□ -1.3
VPS50-205ENST00000441602 SLC39A14Q15043 492 aa6.93□□□□□ -1.3
VPS50-205ENST00000441602 APOBEC3HQ6NTF7 200 aaKnown RBP6.93□□□□□ -1.3
VPS50-205ENST00000441602 NBPF11Q86T75 865 aa6.93□□□□□ -1.3
VPS50-205ENST00000441602 LINC00301Q8NCQ3 95 aa6.93□□□□□ -1.3
VPS50-205ENST00000441602 DACT1Q9NYF0 836 aa6.93□□□□□ -1.3
VPS50-205ENST00000441602 CNTNAP5Q8WYK1 1306 aa6.93□□□□□ -1.3
VPS50-205ENST00000441602 TRAPPC10P48553 1259 aa6.92□□□□□ -1.3
VPS50-205ENST00000441602 TNNI2P48788 182 aa6.92□□□□□ -1.3
VPS50-205ENST00000441602 PFKFB3Q16875 520 aaPredicted RBP6.92□□□□□ -1.3
VPS50-205ENST00000441602 CIAPIN1Q6FI81 312 aa6.92□□□□□ -1.3
VPS50-205ENST00000441602 SLC44A5Q8NCS7 719 aa6.92□□□□□ -1.3
VPS50-205ENST00000441602 SPZ1Q9BXG8 430 aa6.92□□□□□ -1.3
VPS50-205ENST00000441602 ATF5Q9Y2D1 282 aaPredicted RBP6.92□□□□□ -1.3
VPS50-205ENST00000441602 SLX4Q8IY92 1834 aa6.92□□□□□ -1.3
VPS50-205ENST00000441602 PLEKHA8P1O95397 391 aa6.92□□□□□ -1.3
VPS50-205ENST00000441602 TTLL1O95922 423 aa6.92□□□□□ -1.3
VPS50-205ENST00000441602 TRAF1Q13077 416 aa6.92□□□□□ -1.3
VPS50-205ENST00000441602 RCSD1Q6JBY9 416 aa6.92□□□□□ -1.3
VPS50-205ENST00000441602 AIFM3Q96NN9 605 aa6.92□□□□□ -1.3
VPS50-205ENST00000441602 SDF4Q9BRK5 362 aa6.92□□□□□ -1.3
VPS50-205ENST00000441602 PYM1Q9BRP8 204 aaKnown RBP6.92□□□□□ -1.3
VPS50-205ENST00000441602 PPP1R1BQ9UD71 204 aaPredicted RBP6.92□□□□□ -1.3
VPS50-205ENST00000441602 NMT2O60551 498 aa6.92□□□□□ -1.3
VPS50-205ENST00000441602 XRCC6P12956 609 aaKnown RBP eCLIP6.92□□□□□ -1.3
VPS50-205ENST00000441602 CCDC96Q2M329 555 aa6.92□□□□□ -1.3
VPS50-205ENST00000441602 GPATCH4Q5T3I0 446 aaKnown RBP6.92□□□□□ -1.3
VPS50-205ENST00000441602 KRI1Q8N9T8 703 aaKnown RBP6.92□□□□□ -1.3
VPS50-205ENST00000441602 MXD3Q9BW11 206 aa6.92□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms