RNA–Protein interactions for RNA: ENST00000430158.5

USP40-205, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 1,047 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-205ENST00000430158 USP17L5A8MUK1 530 aa14.76□□□□□ -0.05
USP40-205ENST00000430158 CXCL11O14625 94 aa14.76□□□□□ -0.05
USP40-205ENST00000430158 TM4SF4P48230 202 aa14.76□□□□□ -0.05
USP40-205ENST00000430158 MKRN3Q13064 507 aaKnown RBP14.76□□□□□ -0.05
USP40-205ENST00000430158 SEPT2Q15019 361 aa14.76□□□□□ -0.05
USP40-205ENST00000430158 AKNAD1Q5T1N1 836 aa14.76□□□□□ -0.05
USP40-205ENST00000430158 STK11IPQ8N1F8 1099 aa14.76□□□□□ -0.05
USP40-205ENST00000430158 BRI3BPQ8WY22 251 aa14.76□□□□□ -0.05
USP40-205ENST00000430158 PTPN18Q99952 460 aa14.76□□□□□ -0.05
USP40-205ENST00000430158 PICK1Q9NRD5 415 aa14.76□□□□□ -0.05
USP40-205ENST00000430158 RBM8AQ9Y5S9 174 aaKnown RBP14.76□□□□□ -0.05
USP40-205ENST00000430158 ZNF213O14771 459 aa14.75□□□□□ -0.05
USP40-205ENST00000430158 NOVP48745 357 aa14.75□□□□□ -0.05
USP40-205ENST00000430158 PDE4BQ07343 736 aa14.75□□□□□ -0.05
USP40-205ENST00000430158 TMEM179Q6ZVK1 233 aa14.75□□□□□ -0.05
USP40-205ENST00000430158 PAXIP1Q6ZW49 1069 aaPredicted RBP14.75□□□□□ -0.05
USP40-205ENST00000430158 NEDD1Q8NHV4 660 aa14.75□□□□□ -0.05
USP40-205ENST00000430158 ACER1Q8TDN7 264 aa14.75□□□□□ -0.05
USP40-205ENST00000430158 KCNB2Q92953 911 aa14.75□□□□□ -0.05
USP40-205ENST00000430158 LOC285556D6RIA3 1793 aa14.75□□□□□ -0.05
USP40-205ENST00000430158 NEDD4P46934 1319 aa14.74□□□□□ -0.05
USP40-205ENST00000430158 A0A0G2JLL6 359 aaPredicted RBP14.74□□□□□ -0.05
USP40-205ENST00000430158 A0A1W2PRG0 241 aa14.74□□□□□ -0.05
USP40-205ENST00000430158 SLC3A2P08195 630 aaKnown RBP14.74□□□□□ -0.05
USP40-205ENST00000430158 PCP11498 1178 aaKnown RBP14.74□□□□□ -0.05
USP40-205ENST00000430158 SPP2Q13103 211 aa14.74□□□□□ -0.05
USP40-205ENST00000430158 GRM1Q13255 1194 aa14.74□□□□□ -0.05
USP40-205ENST00000430158 SH3D19Q5HYK7 790 aa14.74□□□□□ -0.05
USP40-205ENST00000430158 CASC1Q6TDU7 716 aa14.74□□□□□ -0.05
USP40-205ENST00000430158 KIAA1211Q6ZU35 1233 aa14.74□□□□□ -0.05
USP40-205ENST00000430158 STOX1Q6ZVD7 989 aa14.74□□□□□ -0.05
USP40-205ENST00000430158 PRRT2Q7Z6L0 340 aaPredicted RBP14.74□□□□□ -0.05
USP40-205ENST00000430158 CLEC10AQ8IUN9 316 aa14.74□□□□□ -0.05
USP40-205ENST00000430158 ZNF280CQ8ND82 737 aa14.74□□□□□ -0.05
USP40-205ENST00000430158 TBC1D2Q9BYX2 928 aa14.74□□□□□ -0.05
USP40-205ENST00000430158 MKNK2Q9HBH9 465 aa14.74□□□□□ -0.05
USP40-205ENST00000430158 ANO2Q9NQ90 1003 aa14.74□□□□□ -0.05
USP40-205ENST00000430158 ZBTB4Q9P1Z0 1013 aaPredicted RBP14.74□□□□□ -0.05
USP40-205ENST00000430158 MYH4Q9Y623 1939 aa14.74□□□□□ -0.05
USP40-205ENST00000430158 MANSC4A6NHS7 340 aaPredicted RBP14.73□□□□□ -0.05
USP40-205ENST00000430158 IGF2BP3O00425 579 aaKnown RBP eCLIP14.73□□□□□ -0.05
USP40-205ENST00000430158 GTF2A2P52657 109 aa14.73□□□□□ -0.05
USP40-205ENST00000430158 BACE1P56817 501 aa14.73□□□□□ -0.05
USP40-205ENST00000430158 SNAPC2Q13487 334 aa14.73□□□□□ -0.05
USP40-205ENST00000430158 COL9A3Q14050 684 aaPredicted RBP14.73□□□□□ -0.05
USP40-205ENST00000430158 IMMTQ16891 758 aaKnown RBP14.73□□□□□ -0.05
USP40-205ENST00000430158 FAM47AQ5JRC9 791 aa14.73□□□□□ -0.05
USP40-205ENST00000430158 GPAT2Q6NUI2 795 aa14.73□□□□□ -0.05
USP40-205ENST00000430158 ZNF287Q9HBT7 754 aa14.73□□□□□ -0.05
USP40-205ENST00000430158 CABP5Q9NP86 173 aa14.73□□□□□ -0.05
USP40-205ENST00000430158 IL17RBQ9NRM6 502 aa14.73□□□□□ -0.05
USP40-205ENST00000430158 SLC27A2O14975 620 aa14.72□□□□□ -0.05
USP40-205ENST00000430158 EPB41L2O43491 1005 aaKnown RBP14.72□□□□□ -0.05
USP40-205ENST00000430158 INHBEP58166 350 aa14.72□□□□□ -0.05
USP40-205ENST00000430158 TFAP4Q01664 338 aa14.72□□□□□ -0.05
USP40-205ENST00000430158 DGKZQ13574 1117 aa14.72□□□□□ -0.05
USP40-205ENST00000430158 RAB3GAP1Q15042 981 aa14.72□□□□□ -0.05
USP40-205ENST00000430158 TSGA10IPQ3SY00 556 aa14.72□□□□□ -0.05
USP40-205ENST00000430158 C8orf34Q49A92 452 aa14.72□□□□□ -0.05
USP40-205ENST00000430158 CREB3L3Q68CJ9 461 aa14.72□□□□□ -0.05
USP40-205ENST00000430158 MFSD6Q6ZSS7 791 aa14.72□□□□□ -0.05
USP40-205ENST00000430158 ZNF444Q8N0Y2 327 aaPredicted RBP14.72□□□□□ -0.05
USP40-205ENST00000430158 USP26Q9BXU7 913 aa14.72□□□□□ -0.05
USP40-205ENST00000430158 KIAA1683Q9H0B3 1180 aa14.72□□□□□ -0.05
USP40-205ENST00000430158 KANSL2Q9H9L4 492 aa14.72□□□□□ -0.05
USP40-205ENST00000430158 EMILIN3Q9NT22 766 aa14.72□□□□□ -0.05
USP40-205ENST00000430158 TCP11L1Q9NUJ3 509 aa14.72□□□□□ -0.05
USP40-205ENST00000430158 WBP1LQ9NX94 342 aa14.72□□□□□ -0.05
USP40-205ENST00000430158 MTMR4Q9NYA4 1195 aa14.72□□□□□ -0.05
USP40-205ENST00000430158 RLFQ13129 1914 aa14.71□□□□□ -0.05
USP40-205ENST00000430158 CCL15-CCL14A0A0B4J2E2 113 aa14.71□□□□□ -0.05
USP40-205ENST00000430158 TRIM75PA6NK02 468 aa14.71□□□□□ -0.05
USP40-205ENST00000430158 BTBD19C9JJ37 291 aa14.71□□□□□ -0.05
USP40-205ENST00000430158 MPHOSPH10O00566 681 aaKnown RBP14.71□□□□□ -0.05
USP40-205ENST00000430158 SEC24BO95487 1268 aa14.71□□□□□ -0.05
USP40-205ENST00000430158 CETPP11597 493 aa14.71□□□□□ -0.05
USP40-205ENST00000430158 CCL15Q16663 113 aa14.71□□□□□ -0.05
USP40-205ENST00000430158 KIAA1755Q5JYT7 1200 aa14.71□□□□□ -0.05
USP40-205ENST00000430158 IFNL1Q8IU54 200 aa14.71□□□□□ -0.05
USP40-205ENST00000430158 RASEFQ8IZ41 740 aa14.71□□□□□ -0.05
USP40-205ENST00000430158 FAM43AQ8N2R8 423 aa14.71□□□□□ -0.05
USP40-205ENST00000430158 MKL1Q969V6 931 aa14.71□□□□□ -0.05
USP40-205ENST00000430158 CEP95Q96GE4 821 aa14.71□□□□□ -0.05
USP40-205ENST00000430158 RNF41Q9H4P4 317 aaPredicted RBP14.71□□□□□ -0.05
USP40-205ENST00000430158 AS3MTQ9HBK9 375 aa14.71□□□□□ -0.05
USP40-205ENST00000430158 NYAP2Q9P242 653 aa14.71□□□□□ -0.05
USP40-205ENST00000430158 TMX2Q9Y320 296 aa14.71□□□□□ -0.05
USP40-205ENST00000430158 C19orf81C9J6K1 198 aa14.7□□□□□ -0.06
USP40-205ENST00000430158 USP17L10C9JJH3 530 aa14.7□□□□□ -0.06
USP40-205ENST00000430158 E7EWF7 191 aa14.7□□□□□ -0.06
USP40-205ENST00000430158 NMT2O60551 498 aa14.7□□□□□ -0.06
USP40-205ENST00000430158 EEF2P13639 858 aaKnown RBP14.7□□□□□ -0.06
USP40-205ENST00000430158 HSPA4P34932 840 aa14.7□□□□□ -0.06
USP40-205ENST00000430158 NT5C2P49902 561 aa14.7□□□□□ -0.06
USP40-205ENST00000430158 ICA1Q05084 483 aa14.7□□□□□ -0.06
USP40-205ENST00000430158 MTMR2Q13614 643 aa14.7□□□□□ -0.06
USP40-205ENST00000430158 RCSD1Q6JBY9 416 aa14.7□□□□□ -0.06
USP40-205ENST00000430158 C12orf42Q96LP6 360 aa14.7□□□□□ -0.06
USP40-205ENST00000430158 ZSWIM5Q9P217 1185 aa14.7□□□□□ -0.06
USP40-205ENST00000430158 B4E1Z4 1266 aa14.69□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms