RNA–Protein interactions for RNA: ENST00000429895.5

PTPRF-206, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 6,312 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-206ENST00000429895 CUTAO60888 179 aa17.08■□□□□ 0.32
PTPRF-206ENST00000429895 TUBB4BP68371 445 aa17.08■□□□□ 0.32
PTPRF-206ENST00000429895 GADL1Q6ZQY3 521 aa17.08■□□□□ 0.32
PTPRF-206ENST00000429895 THOC2Q8NI27 1593 aaKnown RBP17.08■□□□□ 0.32
PTPRF-206ENST00000429895 SPDYE16A6NNV3 312 aaPredicted RBP17.07■□□□□ 0.32
PTPRF-206ENST00000429895 TCP10L2B9ZVM9 353 aa17.07■□□□□ 0.32
PTPRF-206ENST00000429895 H7C1D1 291 aa17.07■□□□□ 0.32
PTPRF-206ENST00000429895 ZBTB24O43167 697 aaPredicted RBP17.07■□□□□ 0.32
PTPRF-206ENST00000429895 SPDYE2Q495Y8 402 aa17.07■□□□□ 0.32
PTPRF-206ENST00000429895 HHATQ5VTY9 493 aa17.07■□□□□ 0.32
PTPRF-206ENST00000429895 NLRX1Q86UT6 975 aa17.07■□□□□ 0.32
PTPRF-206ENST00000429895 DNAJC10Q8IXB1 793 aa17.07■□□□□ 0.32
PTPRF-206ENST00000429895 STK24Q9Y6E0 443 aa17.07■□□□□ 0.32
PTPRF-206ENST00000429895 CCDC105Q8IYK2 499 aa17.07■□□□□ 0.32
PTPRF-206ENST00000429895 CCDC89Q8N998 374 aa17.07■□□□□ 0.32
PTPRF-206ENST00000429895 CSADQ9Y600 493 aa17.07■□□□□ 0.32
PTPRF-206ENST00000429895 BCRP11274 1271 aa17.07■□□□□ 0.32
PTPRF-206ENST00000429895 KLHL30Q0D2K2 578 aa17.07■□□□□ 0.32
PTPRF-206ENST00000429895 MIER3Q7Z3K6 550 aa17.07■□□□□ 0.32
PTPRF-206ENST00000429895 SLC52A2Q9HAB3 445 aa17.07■□□□□ 0.32
PTPRF-206ENST00000429895 USP21Q9UK80 565 aa17.07■□□□□ 0.32
PTPRF-206ENST00000429895 CMTR1Q8N1G2 835 aaKnown RBP17.07■□□□□ 0.32
PTPRF-206ENST00000429895 DEPTORQ8TB45 409 aa17.07■□□□□ 0.32
PTPRF-206ENST00000429895 ORAI2Q96SN7 254 aa17.07■□□□□ 0.32
PTPRF-206ENST00000429895 TRPM2O94759 1503 aa17.07■□□□□ 0.32
PTPRF-206ENST00000429895 PDE6BP35913 854 aa17.07■□□□□ 0.32
PTPRF-206ENST00000429895 CYP2J2P51589 502 aa17.07■□□□□ 0.32
PTPRF-206ENST00000429895 SESTD1Q86VW0 696 aa17.07■□□□□ 0.32
PTPRF-206ENST00000429895 TTF2Q9UNY4 1162 aaKnown RBP17.07■□□□□ 0.32
PTPRF-206ENST00000429895 SMC5Q8IY18 1101 aa17.06■□□□□ 0.32
PTPRF-206ENST00000429895 AFAP1L1Q8TED9 768 aa17.06■□□□□ 0.32
PTPRF-206ENST00000429895 TEX14Q8IWB6 1497 aa17.06■□□□□ 0.32
PTPRF-206ENST00000429895 TBC1D8O95759 1140 aa17.06■□□□□ 0.32
PTPRF-206ENST00000429895 ATP11AP98196 1134 aa17.06■□□□□ 0.32
PTPRF-206ENST00000429895 TTC31Q49AM3 519 aaPredicted RBP17.06■□□□□ 0.32
PTPRF-206ENST00000429895 SCYL2Q6P3W7 929 aa17.06■□□□□ 0.32
PTPRF-206ENST00000429895 GAS7O60861 476 aa17.06■□□□□ 0.32
PTPRF-206ENST00000429895 SEC24BO95487 1268 aa17.06■□□□□ 0.32
PTPRF-206ENST00000429895 TRMT44Q8IYL2 757 aaKnown RBP17.06■□□□□ 0.32
PTPRF-206ENST00000429895 ARHGEF2Q92974 986 aaKnown RBP17.06■□□□□ 0.32
PTPRF-206ENST00000429895 PCDHB13Q9Y5F0 798 aa17.06■□□□□ 0.32
PTPRF-206ENST00000429895 VPS37BQ9H9H4 285 aa17.06■□□□□ 0.32
PTPRF-206ENST00000429895 ASXL2Q76L83 1435 aa17.06■□□□□ 0.32
PTPRF-206ENST00000429895 ALAS1P13196 640 aa17.05■□□□□ 0.32
PTPRF-206ENST00000429895 ZNF202O95125 648 aa17.05■□□□□ 0.32
PTPRF-206ENST00000429895 ITKQ08881 620 aa17.05■□□□□ 0.32
PTPRF-206ENST00000429895 SFMBT2Q5VUG0 894 aa17.05■□□□□ 0.32
PTPRF-206ENST00000429895 SPC25Q9HBM1 224 aa17.05■□□□□ 0.32
PTPRF-206ENST00000429895 RIOK3O14730 519 aaKnown RBP17.05■□□□□ 0.32
PTPRF-206ENST00000429895 KRT40Q6A162 431 aa17.05■□□□□ 0.32
PTPRF-206ENST00000429895 IFT20Q8IY31 132 aa17.05■□□□□ 0.32
PTPRF-206ENST00000429895 NUP58Q9BVL2 599 aa17.05■□□□□ 0.32
PTPRF-206ENST00000429895 POLR3AO14802 1390 aaPredicted RBP17.05■□□□□ 0.32
PTPRF-206ENST00000429895 MROH5Q6ZUA9 1318 aa17.05■□□□□ 0.32
PTPRF-206ENST00000429895 ALDH1B1P30837 517 aa17.05■□□□□ 0.32
PTPRF-206ENST00000429895 SCNN1DP51172 638 aa17.05■□□□□ 0.32
PTPRF-206ENST00000429895 SLC12A2P55011 1212 aa17.05■□□□□ 0.32
PTPRF-206ENST00000429895 POSTNQ15063 836 aa17.05■□□□□ 0.32
PTPRF-206ENST00000429895 TYW1BQ6NUM6 668 aa17.05■□□□□ 0.32
PTPRF-206ENST00000429895 HACE1Q8IYU2 909 aa17.05■□□□□ 0.32
PTPRF-206ENST00000429895 MMS19Q96T76 1030 aa17.05■□□□□ 0.32
PTPRF-206ENST00000429895 USP19O94966 1318 aa17.05■□□□□ 0.32
PTPRF-206ENST00000429895 MAGEA1P43355 309 aa17.05■□□□□ 0.32
PTPRF-206ENST00000429895 DOK7Q18PE1 504 aa17.05■□□□□ 0.32
PTPRF-206ENST00000429895 C4orf50Q6ZRC1 276 aa17.05■□□□□ 0.32
PTPRF-206ENST00000429895 OTUD6AQ7L8S5 288 aa17.05■□□□□ 0.32
PTPRF-206ENST00000429895 NLRC4Q9NPP4 1024 aa17.05■□□□□ 0.32
PTPRF-206ENST00000429895 FAM207AQ9NSI2 230 aaPredicted RBP17.05■□□□□ 0.32
PTPRF-206ENST00000429895 SMCO2A6NFE2 343 aa17.04■□□□□ 0.32
PTPRF-206ENST00000429895 KRT15P19012 456 aa17.04■□□□□ 0.32
PTPRF-206ENST00000429895 CACYBPQ9HB71 228 aaKnown RBP17.04■□□□□ 0.32
PTPRF-206ENST00000429895 C10orf67Q8IYJ2 551 aa17.04■□□□□ 0.32
PTPRF-206ENST00000429895 SEPT10Q9P0V9 454 aa17.04■□□□□ 0.32
PTPRF-206ENST00000429895 CSPG5O95196 566 aa17.04■□□□□ 0.32
PTPRF-206ENST00000429895 P4HA1P13674 534 aa17.04■□□□□ 0.32
PTPRF-206ENST00000429895 NLRP12P59046 1061 aa17.04■□□□□ 0.32
PTPRF-206ENST00000429895 SRGAP1Q7Z6B7 1085 aa17.04■□□□□ 0.32
PTPRF-206ENST00000429895 LSM14BQ9BX40 385 aaKnown RBP17.04■□□□□ 0.32
PTPRF-206ENST00000429895 ZBTB7BO15156 539 aaPredicted RBP17.04■□□□□ 0.32
PTPRF-206ENST00000429895 KRT81Q14533 505 aa17.04■□□□□ 0.32
PTPRF-206ENST00000429895 OATP04181 439 aa17.04■□□□□ 0.32
PTPRF-206ENST00000429895 DIXDC1Q155Q3 683 aa17.04■□□□□ 0.32
PTPRF-206ENST00000429895 REXO1Q8N1G1 1221 aaKnown RBP17.04■□□□□ 0.32
PTPRF-206ENST00000429895 ZNF710Q8N1W2 664 aa17.04■□□□□ 0.32
PTPRF-206ENST00000429895 MGARPQ8TDB4 240 aa17.04■□□□□ 0.32
PTPRF-206ENST00000429895 SLF1Q9BQI6 1058 aa17.04■□□□□ 0.32
PTPRF-206ENST00000429895 LLPHQ9BRT6 129 aaKnown RBP17.04■□□□□ 0.32
PTPRF-206ENST00000429895 HAUS2Q9NVX0 235 aa17.04■□□□□ 0.32
PTPRF-206ENST00000429895 CD2APQ9Y5K6 639 aa17.04■□□□□ 0.32
PTPRF-206ENST00000429895 DUOX2Q9NRD8 1548 aa17.04■□□□□ 0.32
PTPRF-206ENST00000429895 I3L4J1 428 aa17.03■□□□□ 0.32
PTPRF-206ENST00000429895 MFSD14BQ5SR56 506 aa17.03■□□□□ 0.32
PTPRF-206ENST00000429895 ARHGAP27Q6ZUM4 889 aa17.03■□□□□ 0.32
PTPRF-206ENST00000429895 RRAGAQ7L523 313 aa17.03■□□□□ 0.32
PTPRF-206ENST00000429895 CARD6Q9BX69 1037 aa17.03■□□□□ 0.32
PTPRF-206ENST00000429895 DNAJC5BQ9UF47 199 aa17.03■□□□□ 0.32
PTPRF-206ENST00000429895 ZFYVE9O95405 1425 aa17.03■□□□□ 0.32
PTPRF-206ENST00000429895 ATXN8OSP0DMR3 200 aa17.03■□□□□ 0.32
PTPRF-206ENST00000429895 SEPT6Q14141 434 aa17.03■□□□□ 0.32
PTPRF-206ENST00000429895 PTPROQ16827 1216 aa17.03■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms