RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 IMPACTQ9P2X3 320 aa9.82□□□□□ -0.84
USP40-203ENST00000427112 CACNA1FO60840 1977 aa9.82□□□□□ -0.84
USP40-203ENST00000427112 TRIM75PA6NK02 468 aa9.82□□□□□ -0.84
USP40-203ENST00000427112 CUTAO60888 179 aa9.82□□□□□ -0.84
USP40-203ENST00000427112 TBC1D8O95759 1140 aa9.82□□□□□ -0.84
USP40-203ENST00000427112 MMP1P03956 469 aa9.82□□□□□ -0.84
USP40-203ENST00000427112 UBXN1Q04323 297 aa9.82□□□□□ -0.84
USP40-203ENST00000427112 DNAAF5Q86Y56 855 aa9.82□□□□□ -0.84
USP40-203ENST00000427112 SLC44A5Q8NCS7 719 aa9.82□□□□□ -0.84
USP40-203ENST00000427112 DYNLL2Q96FJ2 89 aa9.82□□□□□ -0.84
USP40-203ENST00000427112 TIGD1Q96MW7 591 aa9.82□□□□□ -0.84
USP40-203ENST00000427112 ABCB6Q9NP58 842 aa9.82□□□□□ -0.84
USP40-203ENST00000427112 EHD2Q9NZN4 543 aa9.82□□□□□ -0.84
USP40-203ENST00000427112 FBXO2Q9UK22 296 aaPredicted RBP9.82□□□□□ -0.84
USP40-203ENST00000427112 FAN1Q9Y2M0 1017 aa9.82□□□□□ -0.84
USP40-203ENST00000427112 DUSP10Q9Y6W6 482 aa9.82□□□□□ -0.84
USP40-203ENST00000427112 SYNRGQ9UMZ2 1314 aa9.82□□□□□ -0.84
USP40-203ENST00000427112 ZNF185O15231 689 aa9.81□□□□□ -0.84
USP40-203ENST00000427112 ARHGAP6O43182 974 aa9.81□□□□□ -0.84
USP40-203ENST00000427112 H2AFXP16104 143 aaPredicted RBP9.81□□□□□ -0.84
USP40-203ENST00000427112 LONRF2Q1L5Z9 754 aa9.81□□□□□ -0.84
USP40-203ENST00000427112 CC2D1AQ6P1N0 951 aaPredicted RBP9.81□□□□□ -0.84
USP40-203ENST00000427112 CAGE1Q8TC20 777 aa9.81□□□□□ -0.84
USP40-203ENST00000427112 RSPH14Q9UHP6 348 aa9.81□□□□□ -0.84
USP40-203ENST00000427112 STX8Q9UNK0 236 aa9.81□□□□□ -0.84
USP40-203ENST00000427112 NFAT5O94916 1531 aa9.81□□□□□ -0.84
USP40-203ENST00000427112 KIF5CO60282 957 aa9.81□□□□□ -0.84
USP40-203ENST00000427112 KRT9P35527 623 aa9.81□□□□□ -0.84
USP40-203ENST00000427112 NAP1L1P55209 391 aaKnown RBP9.81□□□□□ -0.84
USP40-203ENST00000427112 ARID5AQ03989 594 aa9.81□□□□□ -0.84
USP40-203ENST00000427112 JAKMIP3Q5VZ66 844 aa9.81□□□□□ -0.84
USP40-203ENST00000427112 C3orf67Q6ZVT6 689 aa9.81□□□□□ -0.84
USP40-203ENST00000427112 TOPAZ1Q8N9V7 1692 aa9.81□□□□□ -0.84
USP40-203ENST00000427112 CCDC175P0C221 793 aa9.81□□□□□ -0.84
USP40-203ENST00000427112 SLC5A1P13866 664 aa9.81□□□□□ -0.84
USP40-203ENST00000427112 GABPB1Q06547 395 aaPredicted RBP9.81□□□□□ -0.84
USP40-203ENST00000427112 ISCA1Q9BUE6 129 aa9.81□□□□□ -0.84
USP40-203ENST00000427112 NACAP1Q9BZK3 213 aa9.81□□□□□ -0.84
USP40-203ENST00000427112 ADGRL3Q9HAR2 1447 aa9.81□□□□□ -0.84
USP40-203ENST00000427112 PSDA5PKW4 1024 aaPredicted RBP9.8□□□□□ -0.84
USP40-203ENST00000427112 SLURP2P0DP57 97 aa9.8□□□□□ -0.84
USP40-203ENST00000427112 CAPN2P17655 700 aa9.8□□□□□ -0.84
USP40-203ENST00000427112 ATP6V1AP38606 617 aa9.8□□□□□ -0.84
USP40-203ENST00000427112 TRMT1LQ7Z2T5 733 aaKnown RBP9.8□□□□□ -0.84
USP40-203ENST00000427112 TMEM139Q8IV31 216 aa9.8□□□□□ -0.84
USP40-203ENST00000427112 CRACR2BQ8N4Y2 399 aaPredicted RBP9.8□□□□□ -0.84
USP40-203ENST00000427112 PCDH11XQ9BZA7 1347 aa9.8□□□□□ -0.84
USP40-203ENST00000427112 PCDH11YQ9BZA8 1340 aa9.8□□□□□ -0.84
USP40-203ENST00000427112 JCADQ9P266 1359 aa9.8□□□□□ -0.84
USP40-203ENST00000427112 PCCAP05165 728 aaPredicted RBP9.8□□□□□ -0.84
USP40-203ENST00000427112 SSBP05455 408 aaKnown RBP eCLIP9.8□□□□□ -0.84
USP40-203ENST00000427112 CCDC93Q567U6 631 aa9.8□□□□□ -0.84
USP40-203ENST00000427112 PAGE5Q96GU1 130 aa9.8□□□□□ -0.84
USP40-203ENST00000427112 L2HGDHQ9H9P8 463 aa9.8□□□□□ -0.84
USP40-203ENST00000427112 TUBE1Q9UJT0 475 aa9.8□□□□□ -0.84
USP40-203ENST00000427112 VSNL1P62760 191 aa9.8□□□□□ -0.84
USP40-203ENST00000427112 CCDC178Q5BJE1 867 aa9.8□□□□□ -0.84
USP40-203ENST00000427112 GIGYF2Q6Y7W6 1299 aaKnown RBP9.8□□□□□ -0.84
USP40-203ENST00000427112 KRT26Q7Z3Y9 468 aa9.8□□□□□ -0.84
USP40-203ENST00000427112 HPSEQ9Y251 543 aa9.8□□□□□ -0.84
USP40-203ENST00000427112 PUM3Q15397 648 aaKnown RBP9.79□□□□□ -0.84
USP40-203ENST00000427112 HEATR3Q7Z4Q2 680 aa9.79□□□□□ -0.84
USP40-203ENST00000427112 MAGEB6P1A0A0J9YX57 407 aa9.79□□□□□ -0.84
USP40-203ENST00000427112 TSPY2A6NKD2 308 aa9.79□□□□□ -0.84
USP40-203ENST00000427112 EIF5P55010 431 aaKnown RBP9.79□□□□□ -0.84
USP40-203ENST00000427112 SLC7A5Q01650 507 aa9.79□□□□□ -0.84
USP40-203ENST00000427112 CHRNDQ07001 517 aa9.79□□□□□ -0.84
USP40-203ENST00000427112 ENAHQ8N8S7 591 aaPredicted RBP9.79□□□□□ -0.84
USP40-203ENST00000427112 MARCH10Q8NA82 808 aaPredicted RBP9.79□□□□□ -0.84
USP40-203ENST00000427112 GOLGA1Q92805 767 aa9.79□□□□□ -0.84
USP40-203ENST00000427112 GNL3LQ9NVN8 582 aaKnown RBP9.79□□□□□ -0.84
USP40-203ENST00000427112 TBC1D7Q9P0N9 293 aa9.79□□□□□ -0.84
USP40-203ENST00000427112 LRRC37A3O60309 1634 aa9.79□□□□□ -0.84
USP40-203ENST00000427112 NCAPD2Q15021 1401 aa9.79□□□□□ -0.84
USP40-203ENST00000427112 KIF2AO00139 706 aaPredicted RBP9.79□□□□□ -0.84
USP40-203ENST00000427112 KCNQ2O43526 872 aa9.79□□□□□ -0.84
USP40-203ENST00000427112 FMNL1O95466 1100 aaPredicted RBP9.79□□□□□ -0.84
USP40-203ENST00000427112 USP17L8P0C7I0 530 aa9.79□□□□□ -0.84
USP40-203ENST00000427112 IGHMBP2P38935 993 aaKnown RBP9.79□□□□□ -0.84
USP40-203ENST00000427112 PMS1P54277 932 aaKnown RBP9.79□□□□□ -0.84
USP40-203ENST00000427112 STAG2Q8N3U4 1231 aa9.79□□□□□ -0.84
USP40-203ENST00000427112 EHD4Q9H223 541 aa9.79□□□□□ -0.84
USP40-203ENST00000427112 ZHX3Q9H4I2 956 aa9.79□□□□□ -0.84
USP40-203ENST00000427112 JADE2Q9NQC1 790 aa9.79□□□□□ -0.84
USP40-203ENST00000427112 C5P01031 1676 aa9.78□□□□□ -0.84
USP40-203ENST00000427112 USP17L3A6NCW0 530 aa9.78□□□□□ -0.84
USP40-203ENST00000427112 USP17L4A6NCW7 530 aa9.78□□□□□ -0.84
USP40-203ENST00000427112 IKBKBO14920 756 aa9.78□□□□□ -0.84
USP40-203ENST00000427112 PTPREP23469 700 aa9.78□□□□□ -0.84
USP40-203ENST00000427112 PRDX5P30044 214 aa9.78□□□□□ -0.84
USP40-203ENST00000427112 USP5P45974 858 aa9.78□□□□□ -0.84
USP40-203ENST00000427112 KRT31Q15323 416 aa9.78□□□□□ -0.84
USP40-203ENST00000427112 INF2Q27J81 1249 aa9.78□□□□□ -0.84
USP40-203ENST00000427112 FILIP1LQ4L180 1135 aa9.78□□□□□ -0.84
USP40-203ENST00000427112 TTC38Q5R3I4 469 aa9.78□□□□□ -0.84
USP40-203ENST00000427112 DYMQ7RTS9 669 aa9.78□□□□□ -0.84
USP40-203ENST00000427112 USP17L1Q7RTZ2 530 aa9.78□□□□□ -0.84
USP40-203ENST00000427112 KIAA1328Q86T90 577 aa9.78□□□□□ -0.84
USP40-203ENST00000427112 CLEC10AQ8IUN9 316 aa9.78□□□□□ -0.84
USP40-203ENST00000427112 NELFBQ8WX92 580 aa9.78□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms