RNA–Protein interactions for RNA: ENST00000423061.5

SYNE1-212, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNE1, Length 27,436 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-212ENST00000423061 KCTD21Q4G0X4 260 aa3.79□□□□□ -1.8
SYNE1-212ENST00000423061 HIC2Q96JB3 615 aa3.79□□□□□ -1.8
SYNE1-212ENST00000423061 TBC1D7Q9P0N9 293 aa3.79□□□□□ -1.8
SYNE1-212ENST00000423061 HPCAL4Q9UM19 191 aa3.79□□□□□ -1.8
SYNE1-212ENST00000423061 EIF4BP23588 611 aaKnown RBP3.79□□□□□ -1.8
SYNE1-212ENST00000423061 LSP1P33241 339 aa3.79□□□□□ -1.8
SYNE1-212ENST00000423061 PPP1R15BQ5SWA1 713 aa3.79□□□□□ -1.8
SYNE1-212ENST00000423061 LBHD1Q9BQE6 289 aaPredicted RBP3.79□□□□□ -1.8
SYNE1-212ENST00000423061 ARHGEF10LQ9HCE6 1279 aa3.79□□□□□ -1.8
SYNE1-212ENST00000423061 RNF8O76064 485 aa3.79□□□□□ -1.8
SYNE1-212ENST00000423061 EPS15P42566 896 aa3.79□□□□□ -1.8
SYNE1-212ENST00000423061 RAD23BP54727 409 aa3.79□□□□□ -1.8
SYNE1-212ENST00000423061 MGARPQ8TDB4 240 aa3.79□□□□□ -1.8
SYNE1-212ENST00000423061 RMDN2Q96LZ7 410 aa3.79□□□□□ -1.8
SYNE1-212ENST00000423061 CEP295NLQ96MC4 621 aa3.79□□□□□ -1.8
SYNE1-212ENST00000423061 C9orf78Q9NZ63 289 aaPredicted RBP3.79□□□□□ -1.8
SYNE1-212ENST00000423061 KDM5CP41229 1560 aa3.79□□□□□ -1.8
SYNE1-212ENST00000423061 ATP5JP18859 108 aa3.79□□□□□ -1.8
SYNE1-212ENST00000423061 CDC25BP30305 580 aa3.79□□□□□ -1.8
SYNE1-212ENST00000423061 KIAA0753Q2KHM9 967 aa3.79□□□□□ -1.8
SYNE1-212ENST00000423061 ERLEC1Q96DZ1 483 aa3.79□□□□□ -1.8
SYNE1-212ENST00000423061 PSMB7Q99436 277 aa3.79□□□□□ -1.8
SYNE1-212ENST00000423061 BHMT2Q9H2M3 363 aa3.79□□□□□ -1.8
SYNE1-212ENST00000423061 IGF2BP3O00425 579 aaKnown RBP eCLIP3.79□□□□□ -1.8
SYNE1-212ENST00000423061 TROVE2P10155 538 aaKnown RBP eCLIP3.79□□□□□ -1.8
SYNE1-212ENST00000423061 APBA1Q02410 837 aa3.79□□□□□ -1.8
SYNE1-212ENST00000423061 MYBPC2Q14324 1141 aa3.79□□□□□ -1.8
SYNE1-212ENST00000423061 CEP63Q96MT8 703 aa3.79□□□□□ -1.8
SYNE1-212ENST00000423061 ARHGEF38Q9NXL2 777 aa3.79□□□□□ -1.8
SYNE1-212ENST00000423061 ABCC5O15440 1437 aa3.79□□□□□ -1.8
SYNE1-212ENST00000423061 ATL3Q6DD88 541 aa3.79□□□□□ -1.8
SYNE1-212ENST00000423061 SREK1IP1Q8N9Q2 155 aaPredicted RBP3.79□□□□□ -1.8
SYNE1-212ENST00000423061 NUB1Q9Y5A7 615 aa3.79□□□□□ -1.8
SYNE1-212ENST00000423061 ZNF644Q9H582 1327 aaPredicted RBP3.79□□□□□ -1.8
SYNE1-212ENST00000423061 CROCC2H7BZ55 1655 aa3.79□□□□□ -1.8
SYNE1-212ENST00000423061 SLC26A4O43511 780 aa3.79□□□□□ -1.8
SYNE1-212ENST00000423061 ZPR1O75312 459 aa3.79□□□□□ -1.8
SYNE1-212ENST00000423061 POLR3DP05423 398 aaPredicted RBP3.79□□□□□ -1.8
SYNE1-212ENST00000423061 CFAP157Q5JU67 520 aa3.79□□□□□ -1.8
SYNE1-212ENST00000423061 DNAI2Q9GZS0 605 aa3.79□□□□□ -1.8
SYNE1-212ENST00000423061 LZTS1Q9Y250 596 aa3.79□□□□□ -1.8
SYNE1-212ENST00000423061 PRG4Q92954 1404 aaPredicted RBP3.79□□□□□ -1.8
SYNE1-212ENST00000423061 ATP1A3P13637 1013 aa3.79□□□□□ -1.8
SYNE1-212ENST00000423061 TCEANC2Q96MN5 208 aa3.79□□□□□ -1.8
SYNE1-212ENST00000423061 LUC7LQ9NQ29 371 aaKnown RBP3.79□□□□□ -1.8
SYNE1-212ENST00000423061 PCMTD2Q9NV79 361 aa3.79□□□□□ -1.8
SYNE1-212ENST00000423061 ZNF180Q9UJW8 692 aa3.79□□□□□ -1.8
SYNE1-212ENST00000423061 UBTFL6P0CB48 400 aaPredicted RBP3.79□□□□□ -1.8
SYNE1-212ENST00000423061 TSC22D4Q9Y3Q8 395 aa3.79□□□□□ -1.8
SYNE1-212ENST00000423061 KIAA0586Q9BVV6 1533 aa3.79□□□□□ -1.8
SYNE1-212ENST00000423061 GOLGA8KD6RF30 607 aa3.79□□□□□ -1.8
SYNE1-212ENST00000423061 SERPINB4P48594 390 aa3.79□□□□□ -1.8
SYNE1-212ENST00000423061 IFI16Q16666 785 aaKnown RBP3.79□□□□□ -1.8
SYNE1-212ENST00000423061 L3MBTL1Q9Y468 752 aa3.79□□□□□ -1.8
SYNE1-212ENST00000423061 CCDC155Q8N6L0 562 aa3.79□□□□□ -1.8
SYNE1-212ENST00000423061 EPN3Q9H201 632 aa3.79□□□□□ -1.8
SYNE1-212ENST00000423061 ACTR5Q9H9F9 607 aaPredicted RBP3.79□□□□□ -1.8
SYNE1-212ENST00000423061 BATF3Q9NR55 127 aa3.79□□□□□ -1.8
SYNE1-212ENST00000423061 ZFYVE9O95405 1425 aa3.79□□□□□ -1.8
SYNE1-212ENST00000423061 NR1I2O75469 434 aa3.79□□□□□ -1.8
SYNE1-212ENST00000423061 DNAJC8O75937 253 aaPredicted RBP3.79□□□□□ -1.8
SYNE1-212ENST00000423061 RASSF2P50749 326 aa3.79□□□□□ -1.8
SYNE1-212ENST00000423061 NCAPH2Q6IBW4 605 aa3.79□□□□□ -1.8
SYNE1-212ENST00000423061 SLC17A8Q8NDX2 589 aa3.79□□□□□ -1.8
SYNE1-212ENST00000423061 IWS1Q96ST2 819 aa3.79□□□□□ -1.8
SYNE1-212ENST00000423061 PSDA5PKW4 1024 aaPredicted RBP3.78□□□□□ -1.8
SYNE1-212ENST00000423061 PHLDB2Q86SQ0 1253 aa3.78□□□□□ -1.8
SYNE1-212ENST00000423061 DDX58O95786 925 aaKnown RBP3.78□□□□□ -1.8
SYNE1-212ENST00000423061 MAGEA8P43361 318 aa3.78□□□□□ -1.8
SYNE1-212ENST00000423061 PDCD7Q8N8D1 485 aaKnown RBP3.78□□□□□ -1.8
SYNE1-212ENST00000423061 INTS4Q96HW7 963 aaKnown RBP3.78□□□□□ -1.8
SYNE1-212ENST00000423061 KRT14P02533 472 aa3.78□□□□□ -1.8
SYNE1-212ENST00000423061 MAGEA10P43363 369 aaPredicted RBP3.78□□□□□ -1.8
SYNE1-212ENST00000423061 KIF11P52732 1056 aa3.78□□□□□ -1.8
SYNE1-212ENST00000423061 DDX46Q7L014 1031 aaKnown RBP3.78□□□□□ -1.8
SYNE1-212ENST00000423061 SPICE1Q8N0Z3 855 aa3.78□□□□□ -1.8
SYNE1-212ENST00000423061 CCDC43Q96MW1 224 aaKnown RBP3.78□□□□□ -1.8
SYNE1-212ENST00000423061 ZWILCHQ9H900 591 aa3.78□□□□□ -1.8
SYNE1-212ENST00000423061 SAMD9Q5K651 1589 aa3.78□□□□□ -1.8
SYNE1-212ENST00000423061 MACROD2A1Z1Q3 448 aa3.78□□□□□ -1.8
SYNE1-212ENST00000423061 LRRC10BA6NIK2 292 aa3.78□□□□□ -1.8
SYNE1-212ENST00000423061 RASA3Q14644 834 aa3.78□□□□□ -1.8
SYNE1-212ENST00000423061 VCPKMTQ9H867 229 aa3.78□□□□□ -1.8
SYNE1-212ENST00000423061 SPECC1L-ADORA2AF8WAN1 911 aa3.78□□□□□ -1.8
SYNE1-212ENST00000423061 DDHD2O94830 711 aa3.78□□□□□ -1.8
SYNE1-212ENST00000423061 FGFR1OPO95684 399 aaKnown RBP3.78□□□□□ -1.8
SYNE1-212ENST00000423061 MIER3Q7Z3K6 550 aa3.78□□□□□ -1.8
SYNE1-212ENST00000423061 RBM41Q96IZ5 413 aaKnown RBP3.78□□□□□ -1.8
SYNE1-212ENST00000423061 GGNBP2Q9H3C7 697 aa3.78□□□□□ -1.8
SYNE1-212ENST00000423061 HOMER3Q9NSC5 361 aa3.78□□□□□ -1.8
SYNE1-212ENST00000423061 MINK1Q8N4C8 1332 aaPredicted RBP3.78□□□□□ -1.8
SYNE1-212ENST00000423061 HNRNPRO43390 633 aaKnown RBP3.78□□□□□ -1.8
SYNE1-212ENST00000423061 ALOX15P16050 662 aaPredicted RBP3.78□□□□□ -1.8
SYNE1-212ENST00000423061 CCZ1BP86790 482 aa3.78□□□□□ -1.8
SYNE1-212ENST00000423061 CCZ1P86791 482 aaPredicted RBP3.78□□□□□ -1.8
SYNE1-212ENST00000423061 GUCY2DQ02846 1103 aa3.78□□□□□ -1.8
SYNE1-212ENST00000423061 OSBPL10Q9BXB5 764 aa3.78□□□□□ -1.8
SYNE1-212ENST00000423061 TSPYL4Q9UJ04 414 aa3.78□□□□□ -1.8
SYNE1-212ENST00000423061 TMCC1O94876 653 aa3.78□□□□□ -1.8
SYNE1-212ENST00000423061 MRPS9P82933 396 aaKnown RBP3.78□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms