RNA–Protein interactions for RNA: ENST00000414978.5

MCF2-204, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene MCF2, Length 3,813 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-204ENST00000414978 ACSBG1Q96GR2 724 aa3.33□□□□□ -1.88
MCF2-204ENST00000414978 ABCB6Q9NP58 842 aa3.33□□□□□ -1.88
MCF2-204ENST00000414978 HOMER2Q9NSB8 354 aa3.33□□□□□ -1.88
MCF2-204ENST00000414978 CORINQ9Y5Q5 1042 aa3.33□□□□□ -1.88
MCF2-204ENST00000414978 A0A1W2PNR3 127 aa3.33□□□□□ -1.88
MCF2-204ENST00000414978 ENC1O14682 589 aa3.33□□□□□ -1.88
MCF2-204ENST00000414978 KHNYNO15037 678 aaKnown RBP3.33□□□□□ -1.88
MCF2-204ENST00000414978 ATP4AP20648 1035 aa3.33□□□□□ -1.88
MCF2-204ENST00000414978 HNRNPMP52272 730 aaKnown RBP eCLIP3.33□□□□□ -1.88
MCF2-204ENST00000414978 ZYXQ15942 572 aaKnown RBP3.33□□□□□ -1.88
MCF2-204ENST00000414978 COL13A1Q5TAT6 717 aaPredicted RBP3.33□□□□□ -1.88
MCF2-204ENST00000414978 MAP1SQ66K74 1059 aaPredicted RBP3.33□□□□□ -1.88
MCF2-204ENST00000414978 SHDQ96IW2 340 aa3.33□□□□□ -1.88
MCF2-204ENST00000414978 MIR1-1HGQ9H1L0 117 aa3.33□□□□□ -1.88
MCF2-204ENST00000414978 PRKAG3Q9UGI9 489 aa3.33□□□□□ -1.88
MCF2-204ENST00000414978 LRRC37A3O60309 1634 aa3.33□□□□□ -1.88
MCF2-204ENST00000414978 TMEM238LA0A1B0GVL6 79 aa3.33□□□□□ -1.88
MCF2-204ENST00000414978 TP53P04637 393 aaPredicted RBP3.33□□□□□ -1.88
MCF2-204ENST00000414978 NEFLP07196 543 aa3.33□□□□□ -1.88
MCF2-204ENST00000414978 BAG6P46379 1132 aa3.33□□□□□ -1.88
MCF2-204ENST00000414978 NFKB2Q00653 900 aa3.33□□□□□ -1.88
MCF2-204ENST00000414978 KCNC4Q03721 635 aa3.33□□□□□ -1.88
MCF2-204ENST00000414978 CLCQ05315 142 aa3.33□□□□□ -1.88
MCF2-204ENST00000414978 TYRO3Q06418 890 aa3.33□□□□□ -1.88
MCF2-204ENST00000414978 ITKQ08881 620 aa3.33□□□□□ -1.88
MCF2-204ENST00000414978 SFSWAPQ12872 951 aaKnown RBP3.33□□□□□ -1.88
MCF2-204ENST00000414978 BIRC2Q13490 618 aa3.33□□□□□ -1.88
MCF2-204ENST00000414978 TDRD10Q5VZ19 366 aaKnown RBP3.33□□□□□ -1.88
MCF2-204ENST00000414978 PDE12Q6L8Q7 609 aaKnown RBP3.33□□□□□ -1.88
MCF2-204ENST00000414978 LRP10Q7Z4F1 713 aa3.33□□□□□ -1.88
MCF2-204ENST00000414978 GLIS3Q8NEA6 775 aa3.33□□□□□ -1.88
MCF2-204ENST00000414978 SEC16BQ96JE7 1060 aa3.33□□□□□ -1.88
MCF2-204ENST00000414978 RPS6KC1Q96S38 1066 aa3.33□□□□□ -1.88
MCF2-204ENST00000414978 ARNT2Q9HBZ2 717 aa3.33□□□□□ -1.88
MCF2-204ENST00000414978 FAM13BQ9NYF5 915 aa3.33□□□□□ -1.88
MCF2-204ENST00000414978 TCEAL9Q9UHQ7 104 aa3.33□□□□□ -1.88
MCF2-204ENST00000414978 PNMA2Q9UL42 364 aa3.33□□□□□ -1.88
MCF2-204ENST00000414978 KIF13BQ9NQT8 1826 aa3.33□□□□□ -1.88
MCF2-204ENST00000414978 MYOM3Q5VTT5 1437 aa3.33□□□□□ -1.88
MCF2-204ENST00000414978 USP54Q70EL1 1684 aa3.32□□□□□ -1.88
MCF2-204ENST00000414978 C11orf95C9JLR9 678 aaPredicted RBP3.32□□□□□ -1.88
MCF2-204ENST00000414978 KIF3BO15066 747 aa3.32□□□□□ -1.88
MCF2-204ENST00000414978 POLR2BP30876 1174 aaKnown RBP3.32□□□□□ -1.88
MCF2-204ENST00000414978 ATP11AP98196 1134 aa3.32□□□□□ -1.88
MCF2-204ENST00000414978 PTPN11Q06124 597 aaPredicted RBP3.32□□□□□ -1.88
MCF2-204ENST00000414978 VPS72Q15906 364 aa3.32□□□□□ -1.88
MCF2-204ENST00000414978 CCSAPQ6IQ19 270 aaPredicted RBP3.32□□□□□ -1.88
MCF2-204ENST00000414978 HOMER1Q86YM7 354 aa3.32□□□□□ -1.88
MCF2-204ENST00000414978 SALL4Q9UJQ4 1053 aa3.32□□□□□ -1.88
MCF2-204ENST00000414978 USP21Q9UK80 565 aa3.32□□□□□ -1.88
MCF2-204ENST00000414978 KANK1Q14678 1352 aa3.32□□□□□ -1.88
MCF2-204ENST00000414978 C10orf71Q711Q0 1435 aa3.32□□□□□ -1.88
MCF2-204ENST00000414978 TULP4Q9NRJ4 1543 aa3.32□□□□□ -1.88
MCF2-204ENST00000414978 TNRC6CQ9HCJ0 1690 aaKnown RBP3.32□□□□□ -1.88
MCF2-204ENST00000414978 RGPD8O14715 1765 aaPredicted RBP3.32□□□□□ -1.88
MCF2-204ENST00000414978 TGFB3P10600 412 aa3.32□□□□□ -1.88
MCF2-204ENST00000414978 RAG1P15918 1043 aa3.32□□□□□ -1.88
MCF2-204ENST00000414978 SYCP2LQ5T4T6 812 aa3.32□□□□□ -1.88
MCF2-204ENST00000414978 C16orf54Q6UWD8 224 aa3.32□□□□□ -1.88
MCF2-204ENST00000414978 CDK15Q96Q40 435 aa3.32□□□□□ -1.88
MCF2-204ENST00000414978 MUC3BQ9H195 1237 aa3.32□□□□□ -1.88
MCF2-204ENST00000414978 SUV39H2Q9H5I1 410 aa3.32□□□□□ -1.88
MCF2-204ENST00000414978 TIMMDC1Q9NPL8 285 aa3.32□□□□□ -1.88
MCF2-204ENST00000414978 PRKAB1Q9Y478 270 aa3.32□□□□□ -1.88
MCF2-204ENST00000414978 ATP7BP35670 1465 aa3.32□□□□□ -1.88
MCF2-204ENST00000414978 ABCC6O95255 1503 aa3.32□□□□□ -1.88
MCF2-204ENST00000414978 PKD1L3Q7Z443 1732 aa3.32□□□□□ -1.88
MCF2-204ENST00000414978 PDE8AO60658 829 aa3.32□□□□□ -1.88
MCF2-204ENST00000414978 EDN3P14138 238 aa3.32□□□□□ -1.88
MCF2-204ENST00000414978 ECE1P42892 770 aa3.32□□□□□ -1.88
MCF2-204ENST00000414978 RASSF7Q02833 373 aa3.32□□□□□ -1.88
MCF2-204ENST00000414978 MRM1Q6IN84 353 aaKnown RBP3.32□□□□□ -1.88
MCF2-204ENST00000414978 NBPF10Q6P3W6 841 aaKnown RBP3.32□□□□□ -1.88
MCF2-204ENST00000414978 IGF2-ASQ6U949 168 aa3.32□□□□□ -1.88
MCF2-204ENST00000414978 C14orf80Q86SX3 495 aa3.32□□□□□ -1.88
MCF2-204ENST00000414978 VPS37AQ8NEZ2 397 aa3.32□□□□□ -1.88
MCF2-204ENST00000414978 DPH2Q9BQC3 489 aaPredicted RBP3.32□□□□□ -1.88
MCF2-204ENST00000414978 RTFDC1Q9BY42 306 aaPredicted RBP3.32□□□□□ -1.88
MCF2-204ENST00000414978 ASPSCR1Q9BZE9 553 aa3.32□□□□□ -1.88
MCF2-204ENST00000414978 TMX4Q9H1E5 349 aaPredicted RBP3.32□□□□□ -1.88
MCF2-204ENST00000414978 OSGEPQ9NPF4 335 aa3.32□□□□□ -1.88
MCF2-204ENST00000414978 SIRPGQ9P1W8 387 aa3.32□□□□□ -1.88
MCF2-204ENST00000414978 CFDP1Q9UEE9 299 aaPredicted RBP3.32□□□□□ -1.88
MCF2-204ENST00000414978 ATP8A1Q9Y2Q0 1164 aa3.32□□□□□ -1.88
MCF2-204ENST00000414978 PCDHB14Q9Y5E9 798 aa3.32□□□□□ -1.88
MCF2-204ENST00000414978 SBNO1A3KN83 1393 aa3.31□□□□□ -1.88
MCF2-204ENST00000414978 ADCY9O60503 1353 aa3.31□□□□□ -1.88
MCF2-204ENST00000414978 SIAH2O43255 324 aa3.31□□□□□ -1.88
MCF2-204ENST00000414978 PRPF3O43395 683 aaKnown RBP3.31□□□□□ -1.88
MCF2-204ENST00000414978 MYBP10242 640 aa3.31□□□□□ -1.88
MCF2-204ENST00000414978 GGCXP38435 758 aa3.31□□□□□ -1.88
MCF2-204ENST00000414978 FAAP100Q0VG06 881 aa3.31□□□□□ -1.88
MCF2-204ENST00000414978 CWF19L2Q2TBE0 894 aaKnown RBP3.31□□□□□ -1.88
MCF2-204ENST00000414978 KSR2Q6VAB6 950 aa3.31□□□□□ -1.88
MCF2-204ENST00000414978 DDX42Q86XP3 938 aaKnown RBP eCLIP3.31□□□□□ -1.88
MCF2-204ENST00000414978 AFAP1L2Q8N4X5 818 aa3.31□□□□□ -1.88
MCF2-204ENST00000414978 LRGUKQ96M69 825 aa3.31□□□□□ -1.88
MCF2-204ENST00000414978 GEMIN8Q9NWZ8 242 aaKnown RBP3.31□□□□□ -1.88
MCF2-204ENST00000414978 ZFATQ9P243 1243 aa3.31□□□□□ -1.88
MCF2-204ENST00000414978 LRP2BPQ9P2M1 347 aa3.31□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms