RNA–Protein interactions for RNA: ENST00000414963.2

SF3B1-204, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SF3B1, Length 651 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-204ENST00000414963 KLRG1Q96E93 195 aa16.71■□□□□ 0.27
SF3B1-204ENST00000414963 LARP6Q9BRS8 491 aaKnown RBP16.71■□□□□ 0.27
SF3B1-204ENST00000414963 GLIS2Q9BZE0 524 aaPredicted RBP16.71■□□□□ 0.27
SF3B1-204ENST00000414963 NYAP2Q9P242 653 aa16.71■□□□□ 0.27
SF3B1-204ENST00000414963 SYNPO2Q9UMS6 1093 aa16.71■□□□□ 0.27
SF3B1-204ENST00000414963 POLR2AP24928 1970 aaKnown RBP16.7■□□□□ 0.26
SF3B1-204ENST00000414963 KLF18A0A0U1RQI7 1052 aa16.7■□□□□ 0.26
SF3B1-204ENST00000414963 CCDC69A6NI79 296 aa16.7■□□□□ 0.26
SF3B1-204ENST00000414963 USP2O75604 605 aaPredicted RBP16.7■□□□□ 0.26
SF3B1-204ENST00000414963 TTLL1O95922 423 aa16.7■□□□□ 0.26
SF3B1-204ENST00000414963 GH2P01242 217 aa16.7■□□□□ 0.26
SF3B1-204ENST00000414963 ASNSP08243 561 aa16.7■□□□□ 0.26
SF3B1-204ENST00000414963 TOP1P11387 765 aaKnown RBP16.7■□□□□ 0.26
SF3B1-204ENST00000414963 NF2P35240 595 aa16.7■□□□□ 0.26
SF3B1-204ENST00000414963 APOA5Q6Q788 366 aa16.7■□□□□ 0.26
SF3B1-204ENST00000414963 SIAH1Q8IUQ4 282 aa16.7■□□□□ 0.26
SF3B1-204ENST00000414963 ZNF526Q8TF50 670 aaPredicted RBP16.7■□□□□ 0.26
SF3B1-204ENST00000414963 CHMP4CQ96CF2 233 aa16.7■□□□□ 0.26
SF3B1-204ENST00000414963 ZBTB21Q9ULJ3 1066 aa16.7■□□□□ 0.26
SF3B1-204ENST00000414963 HPS5Q9UPZ3 1129 aa16.7■□□□□ 0.26
SF3B1-204ENST00000414963 SLC12A7Q9Y666 1083 aa16.7■□□□□ 0.26
SF3B1-204ENST00000414963 GREB1LQ9C091 1923 aaPredicted RBP16.7■□□□□ 0.26
SF3B1-204ENST00000414963 NID2Q14112 1375 aa16.69■□□□□ 0.26
SF3B1-204ENST00000414963 PPP1R12BO60237 982 aaPredicted RBP16.69■□□□□ 0.26
SF3B1-204ENST00000414963 GDF11O95390 407 aa16.69■□□□□ 0.26
SF3B1-204ENST00000414963 SEPT2Q15019 361 aa16.69■□□□□ 0.26
SF3B1-204ENST00000414963 PPP2R5BQ15173 497 aa16.69■□□□□ 0.26
SF3B1-204ENST00000414963 MAP3K11Q16584 847 aa16.69■□□□□ 0.26
SF3B1-204ENST00000414963 SHROOM1Q2M3G4 852 aaPredicted RBP16.69■□□□□ 0.26
SF3B1-204ENST00000414963 NOL9Q5SY16 702 aaKnown RBP16.69■□□□□ 0.26
SF3B1-204ENST00000414963 MAP1SQ66K74 1059 aaPredicted RBP16.69■□□□□ 0.26
SF3B1-204ENST00000414963 DLK2Q6UY11 383 aa16.69■□□□□ 0.26
SF3B1-204ENST00000414963 SYNE3Q6ZMZ3 975 aa16.69■□□□□ 0.26
SF3B1-204ENST00000414963 NFXL1Q6ZNB6 911 aa16.69■□□□□ 0.26
SF3B1-204ENST00000414963 NOL8Q76FK4 1167 aaKnown RBP16.69■□□□□ 0.26
SF3B1-204ENST00000414963 CATIPQ7Z7H3 387 aa16.69■□□□□ 0.26
SF3B1-204ENST00000414963 MAP3K14Q99558 947 aa16.69■□□□□ 0.26
SF3B1-204ENST00000414963 TMEM47Q9BQJ4 181 aa16.69■□□□□ 0.26
SF3B1-204ENST00000414963 ZBTB43O43298 467 aa16.68■□□□□ 0.26
SF3B1-204ENST00000414963 DDAH1O94760 285 aa16.68■□□□□ 0.26
SF3B1-204ENST00000414963 LARGE1O95461 756 aa16.68■□□□□ 0.26
SF3B1-204ENST00000414963 CALM1P0DP23 149 aa16.68■□□□□ 0.26
SF3B1-204ENST00000414963 CALM2P0DP24 149 aa16.68■□□□□ 0.26
SF3B1-204ENST00000414963 CALM3P0DP25 149 aa16.68■□□□□ 0.26
SF3B1-204ENST00000414963 TROAPQ12815 778 aa16.68■□□□□ 0.26
SF3B1-204ENST00000414963 CHADLQ6NUI6 762 aa16.68■□□□□ 0.26
SF3B1-204ENST00000414963 ZNF654Q8IZM8 581 aa16.68■□□□□ 0.26
SF3B1-204ENST00000414963 DDX55Q8NHQ9 600 aaKnown RBP eCLIP16.68■□□□□ 0.26
SF3B1-204ENST00000414963 INTS4Q96HW7 963 aaKnown RBP16.68■□□□□ 0.26
SF3B1-204ENST00000414963 SLKQ9H2G2 1235 aaPredicted RBP16.68■□□□□ 0.26
SF3B1-204ENST00000414963 KAT14Q9H8E8 782 aa16.68■□□□□ 0.26
SF3B1-204ENST00000414963 STX8Q9UNK0 236 aa16.68■□□□□ 0.26
SF3B1-204ENST00000414963 UNCXA6NJT0 531 aa16.67■□□□□ 0.26
SF3B1-204ENST00000414963 GOLGA8BA8MQT2 603 aa16.67■□□□□ 0.26
SF3B1-204ENST00000414963 EEF2P13639 858 aaKnown RBP16.67■□□□□ 0.26
SF3B1-204ENST00000414963 INPP5BP32019 993 aa16.67■□□□□ 0.26
SF3B1-204ENST00000414963 MAP3K9P80192 1104 aa16.67■□□□□ 0.26
SF3B1-204ENST00000414963 ICA1Q05084 483 aa16.67■□□□□ 0.26
SF3B1-204ENST00000414963 SCYL3Q8IZE3 742 aa16.67■□□□□ 0.26
SF3B1-204ENST00000414963 PNMA1Q8ND90 353 aa16.67■□□□□ 0.26
SF3B1-204ENST00000414963 GTF3C6Q969F1 213 aa16.67■□□□□ 0.26
SF3B1-204ENST00000414963 WRNIP1Q96S55 665 aa16.67■□□□□ 0.26
SF3B1-204ENST00000414963 GPBP1L1Q9HC44 474 aaPredicted RBP16.67■□□□□ 0.26
SF3B1-204ENST00000414963 CLIP2Q9UDT6 1046 aa16.67■□□□□ 0.26
SF3B1-204ENST00000414963 ITGBL1O95965 494 aaPredicted RBP16.66■□□□□ 0.26
SF3B1-204ENST00000414963 IREB2P48200 963 aaKnown RBP16.66■□□□□ 0.26
SF3B1-204ENST00000414963 ST3GAL1Q11201 340 aa16.66■□□□□ 0.26
SF3B1-204ENST00000414963 RAB3GAP1Q15042 981 aa16.66■□□□□ 0.26
SF3B1-204ENST00000414963 FANCBQ8NB91 859 aa16.66■□□□□ 0.26
SF3B1-204ENST00000414963 MYH8P13535 1937 aa16.66■□□□□ 0.26
SF3B1-204ENST00000414963 CCDC196A0A1B0GTZ2 297 aa16.65■□□□□ 0.26
SF3B1-204ENST00000414963 USP17L5A8MUK1 530 aa16.65■□□□□ 0.26
SF3B1-204ENST00000414963 TRAF5O00463 557 aa16.65■□□□□ 0.26
SF3B1-204ENST00000414963 DHX16O60231 1041 aaKnown RBP16.65■□□□□ 0.26
SF3B1-204ENST00000414963 FKBP1BP68106 108 aa16.65■□□□□ 0.26
SF3B1-204ENST00000414963 SCRN1Q12765 414 aa16.65■□□□□ 0.26
SF3B1-204ENST00000414963 PPP1R3FQ6ZSY5 799 aaPredicted RBP16.65■□□□□ 0.26
SF3B1-204ENST00000414963 CLEC10AQ8IUN9 316 aa16.65■□□□□ 0.26
SF3B1-204ENST00000414963 NECAB1Q8N987 351 aa16.65■□□□□ 0.26
SF3B1-204ENST00000414963 ZKSCAN4Q969J2 545 aaPredicted RBP16.65■□□□□ 0.26
SF3B1-204ENST00000414963 LLPHQ9BRT6 129 aaKnown RBP16.65■□□□□ 0.26
SF3B1-204ENST00000414963 WDR18Q9BV38 432 aa16.65■□□□□ 0.26
SF3B1-204ENST00000414963 FAM217BQ9NTX9 383 aaPredicted RBP16.65■□□□□ 0.26
SF3B1-204ENST00000414963 DAXXQ9UER7 740 aaPredicted RBP16.65■□□□□ 0.26
SF3B1-204ENST00000414963 TMX2Q9Y320 296 aa16.65■□□□□ 0.26
SF3B1-204ENST00000414963 KIF3CO14782 793 aa16.64■□□□□ 0.25
SF3B1-204ENST00000414963 SNHG28P0DPA3 235 aa16.64■□□□□ 0.25
SF3B1-204ENST00000414963 METAP2P50579 478 aaKnown RBP eCLIP16.64■□□□□ 0.25
SF3B1-204ENST00000414963 STK3Q13188 491 aa16.64■□□□□ 0.25
SF3B1-204ENST00000414963 LDLRAD1Q5T700 205 aa16.64■□□□□ 0.25
SF3B1-204ENST00000414963 ARMC9Q7Z3E5 817 aa16.64■□□□□ 0.25
SF3B1-204ENST00000414963 MICU3Q86XE3 530 aa16.64■□□□□ 0.25
SF3B1-204ENST00000414963 GMCL1P1Q8NEA9 526 aa16.64■□□□□ 0.25
SF3B1-204ENST00000414963 ARHGEF10LQ9HCE6 1279 aa16.64■□□□□ 0.25
SF3B1-204ENST00000414963 PICK1Q9NRD5 415 aa16.64■□□□□ 0.25
SF3B1-204ENST00000414963 NAP1L2Q9ULW6 460 aaPredicted RBP16.64■□□□□ 0.25
SF3B1-204ENST00000414963 ZSCAN21Q9Y5A6 473 aaPredicted RBP16.64■□□□□ 0.25
SF3B1-204ENST00000414963 A0A1W2PRG0 241 aa16.63■□□□□ 0.25
SF3B1-204ENST00000414963 GOLGA8AA7E2F4 631 aa16.63■□□□□ 0.25
SF3B1-204ENST00000414963 PTPRAP18433 802 aa16.63■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms