RNA–Protein interactions for RNA: ENST00000414174.1

SF3B1-203, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 4

Gene SF3B1, Length 593 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-203ENST00000414174 PDGFRBP09619 1106 aa4.39□□□□□ -1.71
SF3B1-203ENST00000414174 MAP4P27816 1152 aaKnown RBP4.39□□□□□ -1.71
SF3B1-203ENST00000414174 GTF2F1P35269 517 aaKnown RBP eCLIP4.39□□□□□ -1.71
SF3B1-203ENST00000414174 TNNT2P45379 298 aaPredicted RBP4.39□□□□□ -1.71
SF3B1-203ENST00000414174 PREPP48147 710 aa4.39□□□□□ -1.71
SF3B1-203ENST00000414174 IFT88Q13099 833 aa4.39□□□□□ -1.71
SF3B1-203ENST00000414174 RAPGEF1Q13905 1077 aa4.39□□□□□ -1.71
SF3B1-203ENST00000414174 ALDH1L2Q3SY69 923 aa4.39□□□□□ -1.71
SF3B1-203ENST00000414174 IQCEQ6IPM2 695 aa4.39□□□□□ -1.71
SF3B1-203ENST00000414174 FAM117BQ6P1L5 589 aa4.39□□□□□ -1.71
SF3B1-203ENST00000414174 LILRA6Q6PI73 481 aa4.39□□□□□ -1.71
SF3B1-203ENST00000414174 NCAPG2Q86XI2 1143 aa4.39□□□□□ -1.71
SF3B1-203ENST00000414174 KSR1Q8IVT5 923 aa4.39□□□□□ -1.71
SF3B1-203ENST00000414174 HSCBQ8IWL3 235 aa4.39□□□□□ -1.71
SF3B1-203ENST00000414174 GJD3Q8N144 294 aa4.39□□□□□ -1.71
SF3B1-203ENST00000414174 MIGA1Q8NAN2 632 aa4.39□□□□□ -1.71
SF3B1-203ENST00000414174 APBA2Q99767 749 aa4.39□□□□□ -1.71
SF3B1-203ENST00000414174 RNF208Q9H0X6 261 aa4.39□□□□□ -1.71
SF3B1-203ENST00000414174 ALDH8A1Q9H2A2 487 aaPredicted RBP4.39□□□□□ -1.71
SF3B1-203ENST00000414174 SUDS3Q9H7L9 328 aaPredicted RBP4.39□□□□□ -1.71
SF3B1-203ENST00000414174 LATS2Q9NRM7 1088 aa4.39□□□□□ -1.71
SF3B1-203ENST00000414174 ISY1Q9ULR0 285 aaKnown RBP4.39□□□□□ -1.71
SF3B1-203ENST00000414174 SOX13Q9UN79 622 aa4.39□□□□□ -1.71
SF3B1-203ENST00000414174 TTF2Q9UNY4 1162 aaKnown RBP4.39□□□□□ -1.71
SF3B1-203ENST00000414174 DCAF1Q9Y4B6 1507 aa4.39□□□□□ -1.71
SF3B1-203ENST00000414174 CCDC163A0A0D9SF12 145 aa4.38□□□□□ -1.71
SF3B1-203ENST00000414174 PABPN1LA6NDY0 278 aaKnown RBP4.38□□□□□ -1.71
SF3B1-203ENST00000414174 VGLL3A8MV65 326 aa4.38□□□□□ -1.71
SF3B1-203ENST00000414174 IPO5O00410 1097 aaKnown RBP4.38□□□□□ -1.71
SF3B1-203ENST00000414174 SCAMP3O14828 347 aaKnown RBP4.38□□□□□ -1.71
SF3B1-203ENST00000414174 CYP26A1O43174 497 aa4.38□□□□□ -1.71
SF3B1-203ENST00000414174 FOSP01100 380 aaPredicted RBP4.38□□□□□ -1.71
SF3B1-203ENST00000414174 CES1P23141 567 aa4.38□□□□□ -1.71
SF3B1-203ENST00000414174 GNALP38405 381 aa4.38□□□□□ -1.71
SF3B1-203ENST00000414174 SERPINB4P48594 390 aa4.38□□□□□ -1.71
SF3B1-203ENST00000414174 HMGN5P82970 282 aaKnown RBP4.38□□□□□ -1.71
SF3B1-203ENST00000414174 KIAA2012Q0VF49 1180 aa4.38□□□□□ -1.71
SF3B1-203ENST00000414174 WASHC5Q12768 1159 aa4.38□□□□□ -1.71
SF3B1-203ENST00000414174 LONRF1Q17RB8 773 aa4.38□□□□□ -1.71
SF3B1-203ENST00000414174 C8orf34Q49A92 452 aa4.38□□□□□ -1.71
SF3B1-203ENST00000414174 PEAR1Q5VY43 1037 aaPredicted RBP4.38□□□□□ -1.71
SF3B1-203ENST00000414174 UBE2Q1Q7Z7E8 422 aa4.38□□□□□ -1.71
SF3B1-203ENST00000414174 CHPFQ8IZ52 775 aa4.38□□□□□ -1.71
SF3B1-203ENST00000414174 NDUFAF2Q8N183 169 aa4.38□□□□□ -1.71
SF3B1-203ENST00000414174 KIAA1958Q8N8K9 716 aa4.38□□□□□ -1.71
SF3B1-203ENST00000414174 ACRBPQ8NEB7 543 aa4.38□□□□□ -1.71
SF3B1-203ENST00000414174 FLCNQ8NFG4 579 aa4.38□□□□□ -1.71
SF3B1-203ENST00000414174 TMEM40Q8WWA1 233 aa4.38□□□□□ -1.71
SF3B1-203ENST00000414174 WNT8BQ93098 351 aa4.38□□□□□ -1.71
SF3B1-203ENST00000414174 KLHDC7BQ96G42 594 aa4.38□□□□□ -1.71
SF3B1-203ENST00000414174 FRMD6Q96NE9 622 aa4.38□□□□□ -1.71
SF3B1-203ENST00000414174 ZKSCAN3Q9BRR0 538 aa4.38□□□□□ -1.71
SF3B1-203ENST00000414174 ZNF69Q9UC07 566 aa4.38□□□□□ -1.71
SF3B1-203ENST00000414174 SUN2Q9UH99 717 aa4.38□□□□□ -1.71
SF3B1-203ENST00000414174 ASAP1Q9ULH1 1129 aa4.38□□□□□ -1.71
SF3B1-203ENST00000414174 DIS3Q9Y2L1 958 aaKnown RBP4.38□□□□□ -1.71
SF3B1-203ENST00000414174 THRAP3Q9Y2W1 955 aaKnown RBP4.38□□□□□ -1.71
SF3B1-203ENST00000414174 SOWAHDA6NJG2 315 aa4.37□□□□□ -1.71
SF3B1-203ENST00000414174 GOLGA6L6A8MZA4 724 aa4.37□□□□□ -1.71
SF3B1-203ENST00000414174 H3BRJ5 948 aa4.37□□□□□ -1.71
SF3B1-203ENST00000414174 PDE2AO00408 941 aaPredicted RBP4.37□□□□□ -1.71
SF3B1-203ENST00000414174 PES1O00541 588 aaKnown RBP4.37□□□□□ -1.71
SF3B1-203ENST00000414174 ENPP3O14638 875 aa4.37□□□□□ -1.71
SF3B1-203ENST00000414174 KIF3BO15066 747 aa4.37□□□□□ -1.71
SF3B1-203ENST00000414174 PLIN1O60240 522 aa4.37□□□□□ -1.71
SF3B1-203ENST00000414174 KIF20AO95235 890 aa4.37□□□□□ -1.71
SF3B1-203ENST00000414174 RBP3P10745 1247 aa4.37□□□□□ -1.71
SF3B1-203ENST00000414174 PTPRAP18433 802 aa4.37□□□□□ -1.71
SF3B1-203ENST00000414174 CASP2P42575 452 aa4.37□□□□□ -1.71
SF3B1-203ENST00000414174 USP5P45974 858 aa4.37□□□□□ -1.71
SF3B1-203ENST00000414174 TRPC1P48995 793 aa4.37□□□□□ -1.71
SF3B1-203ENST00000414174 ZNF132P52740 706 aa4.37□□□□□ -1.71
SF3B1-203ENST00000414174 TAGLNQ01995 201 aaKnown RBP4.37□□□□□ -1.71
SF3B1-203ENST00000414174 SIM2Q14190 667 aaPredicted RBP4.37□□□□□ -1.71
SF3B1-203ENST00000414174 ENOX2Q16206 610 aaKnown RBP4.37□□□□□ -1.71
SF3B1-203ENST00000414174 TMEM95Q3KNT9 176 aa4.37□□□□□ -1.71
SF3B1-203ENST00000414174 ODR4Q5SWX8 454 aa4.37□□□□□ -1.71
SF3B1-203ENST00000414174 SOGA3Q5TF21 947 aa4.37□□□□□ -1.71
SF3B1-203ENST00000414174 PDXDC1Q6P996 788 aa4.37□□□□□ -1.71
SF3B1-203ENST00000414174 OTUD6AQ7L8S5 288 aa4.37□□□□□ -1.71
SF3B1-203ENST00000414174 VN1R5Q7Z5H4 357 aa4.37□□□□□ -1.71
SF3B1-203ENST00000414174 FBXL6Q8N531 539 aa4.37□□□□□ -1.71
SF3B1-203ENST00000414174 PAF1Q8N7H5 531 aa4.37□□□□□ -1.71
SF3B1-203ENST00000414174 CCDC89Q8N998 374 aa4.37□□□□□ -1.71
SF3B1-203ENST00000414174 NXPE3Q969Y0 559 aa4.37□□□□□ -1.71
SF3B1-203ENST00000414174 GMLQ99445 158 aa4.37□□□□□ -1.71
SF3B1-203ENST00000414174 MPHOSPH6Q99547 160 aaKnown RBP4.37□□□□□ -1.71
SF3B1-203ENST00000414174 SLC38A3Q99624 504 aa4.37□□□□□ -1.71
SF3B1-203ENST00000414174 POLR3CQ9BUI4 534 aaPredicted RBP4.37□□□□□ -1.71
SF3B1-203ENST00000414174 CCDC94Q9BW85 323 aaPredicted RBP4.37□□□□□ -1.71
SF3B1-203ENST00000414174 LDHAL6BQ9BYZ2 381 aaPredicted RBP4.37□□□□□ -1.71
SF3B1-203ENST00000414174 C22orf23Q9BZE7 217 aa4.37□□□□□ -1.71
SF3B1-203ENST00000414174 OSBPL2Q9H1P3 480 aa4.37□□□□□ -1.71
SF3B1-203ENST00000414174 SEC31BQ9NQW1 1179 aa4.37□□□□□ -1.71
SF3B1-203ENST00000414174 POLG2Q9UHN1 485 aa4.37□□□□□ -1.71
SF3B1-203ENST00000414174 SLC45A1Q9Y2W3 748 aa4.37□□□□□ -1.71
SF3B1-203ENST00000414174 MRPL42Q9Y6G3 142 aaKnown RBP4.37□□□□□ -1.71
SF3B1-203ENST00000414174 GOLGA6L3A6NEY3 463 aa4.36□□□□□ -1.71
SF3B1-203ENST00000414174 TRIM64CA6NLI5 447 aa4.36□□□□□ -1.71
SF3B1-203ENST00000414174 METTL12A8MUP2 240 aa4.36□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms