RNA–Protein interactions for RNA: ENST00000413442.5

USP54-202, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 543 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-202ENST00000413442 APPP05067 770 aa7.63□□□□□ -1.19
USP54-202ENST00000413442 SHMT1P34896 483 aa7.63□□□□□ -1.19
USP54-202ENST00000413442 CDK8P49336 464 aa7.63□□□□□ -1.19
USP54-202ENST00000413442 CCNA1P78396 465 aa7.63□□□□□ -1.19
USP54-202ENST00000413442 IRX3P78415 501 aaPredicted RBP7.63□□□□□ -1.19
USP54-202ENST00000413442 COG2Q14746 738 aa7.63□□□□□ -1.19
USP54-202ENST00000413442 IFNL3Q8IZI9 196 aa7.63□□□□□ -1.19
USP54-202ENST00000413442 MB21D1Q8N884 522 aa7.63□□□□□ -1.19
USP54-202ENST00000413442 GPRC5AQ8NFJ5 357 aa7.63□□□□□ -1.19
USP54-202ENST00000413442 EXOC6Q8TAG9 804 aa7.63□□□□□ -1.19
USP54-202ENST00000413442 NKX2-3Q8TAU0 364 aa7.63□□□□□ -1.19
USP54-202ENST00000413442 SDR42E1Q8WUS8 393 aa7.63□□□□□ -1.19
USP54-202ENST00000413442 OSBP2Q969R2 916 aa7.63□□□□□ -1.19
USP54-202ENST00000413442 ARMC5Q96C12 935 aa7.63□□□□□ -1.19
USP54-202ENST00000413442 TRIM47Q96LD4 638 aa7.63□□□□□ -1.19
USP54-202ENST00000413442 R3HDMLQ9H3Y0 253 aa7.63□□□□□ -1.19
USP54-202ENST00000413442 DNAJC18Q9H819 358 aa7.63□□□□□ -1.19
USP54-202ENST00000413442 NYAP2Q9P242 653 aa7.63□□□□□ -1.19
USP54-202ENST00000413442 TMX2Q9Y320 296 aa7.63□□□□□ -1.19
USP54-202ENST00000413442 RABGAP1Q9Y3P9 1069 aa7.63□□□□□ -1.19
USP54-202ENST00000413442 NAV1Q8NEY1 1877 aa7.63□□□□□ -1.19
USP54-202ENST00000413442 SIPA1L1O43166 1804 aa7.63□□□□□ -1.19
USP54-202ENST00000413442 MGAMO43451 1857 aa7.62□□□□□ -1.19
USP54-202ENST00000413442 ZMYM6O95789 1325 aa7.62□□□□□ -1.19
USP54-202ENST00000413442 CCDC85CA6NKD9 419 aa7.62□□□□□ -1.19
USP54-202ENST00000413442 FMNL1O95466 1100 aaPredicted RBP7.62□□□□□ -1.19
USP54-202ENST00000413442 IGHDP01880 384 aa7.62□□□□□ -1.19
USP54-202ENST00000413442 MAPK4P31152 587 aa7.62□□□□□ -1.19
USP54-202ENST00000413442 COPB2P35606 906 aa7.62□□□□□ -1.19
USP54-202ENST00000413442 PSMC4P43686 418 aa7.62□□□□□ -1.19
USP54-202ENST00000413442 HMGCS2P54868 508 aa7.62□□□□□ -1.19
USP54-202ENST00000413442 RAB3GAP1Q15042 981 aa7.62□□□□□ -1.19
USP54-202ENST00000413442 CCDC178Q5BJE1 867 aa7.62□□□□□ -1.19
USP54-202ENST00000413442 ERICH6BQ5W0A0 696 aa7.62□□□□□ -1.19
USP54-202ENST00000413442 CATSPERGQ6ZRH7 1159 aa7.62□□□□□ -1.19
USP54-202ENST00000413442 PLEKHM2Q8IWE5 1019 aa7.62□□□□□ -1.19
USP54-202ENST00000413442 CD99L2Q8TCZ2 262 aa7.62□□□□□ -1.19
USP54-202ENST00000413442 RUFY2Q8WXA3 655 aa7.62□□□□□ -1.19
USP54-202ENST00000413442 MKL1Q969V6 931 aa7.62□□□□□ -1.19
USP54-202ENST00000413442 EDC3Q96F86 508 aaKnown RBP7.62□□□□□ -1.19
USP54-202ENST00000413442 TTC14Q96N46 770 aa7.62□□□□□ -1.19
USP54-202ENST00000413442 FEZ1Q99689 392 aa7.62□□□□□ -1.19
USP54-202ENST00000413442 TMEM106CQ9BVX2 250 aa7.62□□□□□ -1.19
USP54-202ENST00000413442 NAPBQ9H115 298 aa7.62□□□□□ -1.19
USP54-202ENST00000413442 BCL11AQ9H165 835 aa7.62□□□□□ -1.19
USP54-202ENST00000413442 ASCC2Q9H1I8 757 aaPredicted RBP7.62□□□□□ -1.19
USP54-202ENST00000413442 SRRDQ9UH36 339 aa7.62□□□□□ -1.19
USP54-202ENST00000413442 CTNNA3Q9UI47 895 aa7.62□□□□□ -1.19
USP54-202ENST00000413442 ANAPC4Q9UJX5 808 aa7.62□□□□□ -1.19
USP54-202ENST00000413442 HPS5Q9UPZ3 1129 aa7.62□□□□□ -1.19
USP54-202ENST00000413442 BAZ2AQ9UIF9 1905 aaKnown RBP7.62□□□□□ -1.19
USP54-202ENST00000413442 DDX60LQ5H9U9 1706 aaKnown RBP7.61□□□□□ -1.19
USP54-202ENST00000413442 ROBO3Q96MS0 1386 aa7.61□□□□□ -1.19
USP54-202ENST00000413442 FAM196BA6NMK8 535 aa7.61□□□□□ -1.19
USP54-202ENST00000413442 TRIM6-TRIM34B2RNG4 842 aa7.61□□□□□ -1.19
USP54-202ENST00000413442 WDR46O15213 610 aaKnown RBP7.61□□□□□ -1.19
USP54-202ENST00000413442 PRKAB2O43741 272 aa7.61□□□□□ -1.19
USP54-202ENST00000413442 FGRP09769 529 aa7.61□□□□□ -1.19
USP54-202ENST00000413442 XRCC5P13010 732 aaKnown RBP7.61□□□□□ -1.19
USP54-202ENST00000413442 TDO2P48775 406 aa7.61□□□□□ -1.19
USP54-202ENST00000413442 HERVK_113P62684 666 aa7.61□□□□□ -1.19
USP54-202ENST00000413442 UBXN2AP68543 259 aa7.61□□□□□ -1.19
USP54-202ENST00000413442 MTMR2Q13614 643 aa7.61□□□□□ -1.19
USP54-202ENST00000413442 RRP1BQ14684 758 aaKnown RBP7.61□□□□□ -1.19
USP54-202ENST00000413442 RCSD1Q6JBY9 416 aa7.61□□□□□ -1.19
USP54-202ENST00000413442 CCAR1Q8IX12 1150 aaKnown RBP7.61□□□□□ -1.19
USP54-202ENST00000413442 SLAIN1Q8ND83 568 aa7.61□□□□□ -1.19
USP54-202ENST00000413442 LNPKQ9C0E8 428 aa7.61□□□□□ -1.19
USP54-202ENST00000413442 GOPCQ9HD26 462 aa7.61□□□□□ -1.19
USP54-202ENST00000413442 EMILIN3Q9NT22 766 aa7.61□□□□□ -1.19
USP54-202ENST00000413442 CPA4Q9UI42 421 aa7.61□□□□□ -1.19
USP54-202ENST00000413442 PNMA2Q9UL42 364 aa7.61□□□□□ -1.19
USP54-202ENST00000413442 MINDY4BA8MYZ0 360 aa7.6□□□□□ -1.19
USP54-202ENST00000413442 MPHOSPH10O00566 681 aaKnown RBP7.6□□□□□ -1.19
USP54-202ENST00000413442 TNPO2O14787 897 aaKnown RBP7.6□□□□□ -1.19
USP54-202ENST00000413442 PLA2G6O60733 806 aa7.6□□□□□ -1.19
USP54-202ENST00000413442 GDF11O95390 407 aa7.6□□□□□ -1.19
USP54-202ENST00000413442 CYP2C8P10632 490 aa7.6□□□□□ -1.19
USP54-202ENST00000413442 SDSP20132 328 aa7.6□□□□□ -1.19
USP54-202ENST00000413442 GUCY1A2P33402 732 aa7.6□□□□□ -1.19
USP54-202ENST00000413442 MLLT1Q03111 559 aaPredicted RBP7.6□□□□□ -1.19
USP54-202ENST00000413442 SEPT2Q15019 361 aa7.6□□□□□ -1.19
USP54-202ENST00000413442 SLC9C1Q4G0N8 1177 aa7.6□□□□□ -1.19
USP54-202ENST00000413442 SHCBP1Q8NEM2 672 aa7.6□□□□□ -1.19
USP54-202ENST00000413442 NEDD1Q8NHV4 660 aa7.6□□□□□ -1.19
USP54-202ENST00000413442 RAET1EQ8TD07 263 aa7.6□□□□□ -1.19
USP54-202ENST00000413442 SOCS4Q8WXH5 440 aa7.6□□□□□ -1.19
USP54-202ENST00000413442 P2RX7Q99572 595 aaKnown RBP7.6□□□□□ -1.19
USP54-202ENST00000413442 MAF1Q9H063 256 aa7.6□□□□□ -1.19
USP54-202ENST00000413442 RNF41Q9H4P4 317 aaPredicted RBP7.6□□□□□ -1.19
USP54-202ENST00000413442 VCPKMTQ9H867 229 aa7.6□□□□□ -1.19
USP54-202ENST00000413442 TCP11L1Q9NUJ3 509 aa7.6□□□□□ -1.19
USP54-202ENST00000413442 SLC5A4Q9NY91 659 aa7.6□□□□□ -1.19
USP54-202ENST00000413442 RBBP6Q7Z6E9 1792 aaKnown RBP7.59□□□□□ -1.19
USP54-202ENST00000413442 ORC4O43929 436 aa7.59□□□□□ -1.19
USP54-202ENST00000413442 SLC25A27O95847 323 aa7.59□□□□□ -1.19
USP54-202ENST00000413442 TTLL1O95922 423 aa7.59□□□□□ -1.19
USP54-202ENST00000413442 TSPY3P0CV98 308 aa7.59□□□□□ -1.19
USP54-202ENST00000413442 TSPY8P0CW00 308 aa7.59□□□□□ -1.19
USP54-202ENST00000413442 GRK4P32298 578 aa7.59□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms