RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 PDZD8Q8NEN9 1154 aa14.21□□□□□ -0.13
COL6A3-206ENST00000409809 LRGUKQ96M69 825 aa14.21□□□□□ -0.13
COL6A3-206ENST00000409809 HSPA6P17066 643 aa14.21□□□□□ -0.13
COL6A3-206ENST00000409809 RBM6P78332 1123 aaKnown RBP14.21□□□□□ -0.13
COL6A3-206ENST00000409809 ESRRBO95718 433 aa14.21□□□□□ -0.13
COL6A3-206ENST00000409809 HDAC4P56524 1084 aa14.21□□□□□ -0.13
COL6A3-206ENST00000409809 FLIIQ13045 1269 aa14.21□□□□□ -0.13
COL6A3-206ENST00000409809 CCDC105Q8IYK2 499 aa14.21□□□□□ -0.13
COL6A3-206ENST00000409809 CDC23Q9UJX2 597 aa14.21□□□□□ -0.13
COL6A3-206ENST00000409809 KCNH3Q9ULD8 1083 aa14.21□□□□□ -0.13
COL6A3-206ENST00000409809 LARP7Q4G0J3 582 aaKnown RBP eCLIP14.21□□□□□ -0.14
COL6A3-206ENST00000409809 UHRF1BP1Q6BDS2 1440 aa14.21□□□□□ -0.14
COL6A3-206ENST00000409809 AMFRQ9UKV5 643 aa14.21□□□□□ -0.14
COL6A3-206ENST00000409809 ASPHQ12797 758 aa14.21□□□□□ -0.14
COL6A3-206ENST00000409809 C10orf76Q5T2E6 689 aa14.21□□□□□ -0.14
COL6A3-206ENST00000409809 Q6ZUG5 572 aa14.2□□□□□ -0.14
COL6A3-206ENST00000409809 SH3BP5O60239 455 aa14.2□□□□□ -0.14
COL6A3-206ENST00000409809 RWDD2BP57060 319 aa14.2□□□□□ -0.14
COL6A3-206ENST00000409809 KCNH5Q8NCM2 988 aa14.2□□□□□ -0.14
COL6A3-206ENST00000409809 RAPGEF1Q13905 1077 aa14.2□□□□□ -0.14
COL6A3-206ENST00000409809 CERS3Q8IU89 383 aa14.2□□□□□ -0.14
COL6A3-206ENST00000409809 RETREG2Q8NC44 543 aa14.2□□□□□ -0.14
COL6A3-206ENST00000409809 MAGEF1Q9HAY2 307 aa14.2□□□□□ -0.14
COL6A3-206ENST00000409809 RBM8AQ9Y5S9 174 aaKnown RBP14.2□□□□□ -0.14
COL6A3-206ENST00000409809 RAP1GDS1P52306 607 aa14.2□□□□□ -0.14
COL6A3-206ENST00000409809 CRNKL1Q9BZJ0 848 aaKnown RBP14.2□□□□□ -0.14
COL6A3-206ENST00000409809 KRT5P13647 590 aa14.2□□□□□ -0.14
COL6A3-206ENST00000409809 USP26Q9BXU7 913 aa14.2□□□□□ -0.14
COL6A3-206ENST00000409809 C10orf88Q9H8K7 445 aa14.2□□□□□ -0.14
COL6A3-206ENST00000409809 INTS9Q9NV88 658 aaKnown RBP14.2□□□□□ -0.14
COL6A3-206ENST00000409809 B4DLN1 442 aa14.2□□□□□ -0.14
COL6A3-206ENST00000409809 TTI1O43156 1089 aa14.2□□□□□ -0.14
COL6A3-206ENST00000409809 KIF11P52732 1056 aa14.2□□□□□ -0.14
COL6A3-206ENST00000409809 MRPL12P52815 198 aaKnown RBP14.2□□□□□ -0.14
COL6A3-206ENST00000409809 ISM2Q6H9L7 571 aa14.2□□□□□ -0.14
COL6A3-206ENST00000409809 KRT80Q6KB66 452 aa14.2□□□□□ -0.14
COL6A3-206ENST00000409809 GLE1Q53GS7 698 aaKnown RBP14.19□□□□□ -0.14
COL6A3-206ENST00000409809 SFMBT2Q5VUG0 894 aa14.19□□□□□ -0.14
COL6A3-206ENST00000409809 SV2BQ7L1I2 683 aa14.19□□□□□ -0.14
COL6A3-206ENST00000409809 RGS22Q8NE09 1264 aa14.19□□□□□ -0.14
COL6A3-206ENST00000409809 PRPF6O94906 941 aaKnown RBP14.19□□□□□ -0.14
COL6A3-206ENST00000409809 POLE2P56282 527 aa14.19□□□□□ -0.14
COL6A3-206ENST00000409809 PARD3Q8TEW0 1356 aa14.19□□□□□ -0.14
COL6A3-206ENST00000409809 WDR44Q5JSH3 913 aa14.19□□□□□ -0.14
COL6A3-206ENST00000409809 HAUS3Q68CZ6 603 aa14.19□□□□□ -0.14
COL6A3-206ENST00000409809 KLHL29Q96CT2 875 aa14.19□□□□□ -0.14
COL6A3-206ENST00000409809 ANKRD27Q96NW4 1050 aa14.19□□□□□ -0.14
COL6A3-206ENST00000409809 KDM5DQ9BY66 1539 aa14.19□□□□□ -0.14
COL6A3-206ENST00000409809 SLC8A3P57103 927 aa14.19□□□□□ -0.14
COL6A3-206ENST00000409809 UAP1Q16222 522 aaPredicted RBP14.19□□□□□ -0.14
COL6A3-206ENST00000409809 MUM1L1Q5H9M0 696 aa14.19□□□□□ -0.14
COL6A3-206ENST00000409809 TEDDM1Q5T9Z0 273 aa14.19□□□□□ -0.14
COL6A3-206ENST00000409809 OR8K1Q8NGG5 319 aa14.19□□□□□ -0.14
COL6A3-206ENST00000409809 FAM210AQ96ND0 272 aa14.19□□□□□ -0.14
COL6A3-206ENST00000409809 KRT12Q99456 494 aa14.19□□□□□ -0.14
COL6A3-206ENST00000409809 BIRC2Q13490 618 aa14.19□□□□□ -0.14
COL6A3-206ENST00000409809 SLC30A9Q6PML9 568 aa14.19□□□□□ -0.14
COL6A3-206ENST00000409809 CCDC13Q8IYE1 715 aa14.19□□□□□ -0.14
COL6A3-206ENST00000409809 SRRM1Q8IYB3 904 aaKnown RBP14.19□□□□□ -0.14
COL6A3-206ENST00000409809 TEX11Q8IYF3 940 aa14.19□□□□□ -0.14
COL6A3-206ENST00000409809 ZFYVE9O95405 1425 aa14.19□□□□□ -0.14
COL6A3-206ENST00000409809 PPP1R12AO14974 1030 aaPredicted RBP14.18□□□□□ -0.14
COL6A3-206ENST00000409809 LMBRD1Q9NUN5 540 aa14.18□□□□□ -0.14
COL6A3-206ENST00000409809 MX2P20592 715 aa14.18□□□□□ -0.14
COL6A3-206ENST00000409809 AK2P54819 239 aa14.18□□□□□ -0.14
COL6A3-206ENST00000409809 ARID5AQ03989 594 aa14.18□□□□□ -0.14
COL6A3-206ENST00000409809 LONRF2Q1L5Z9 754 aa14.18□□□□□ -0.14
COL6A3-206ENST00000409809 SCYL3Q8IZE3 742 aa14.18□□□□□ -0.14
COL6A3-206ENST00000409809 DHX58Q96C10 678 aa14.18□□□□□ -0.14
COL6A3-206ENST00000409809 CHCHD3Q9NX63 227 aaKnown RBP14.18□□□□□ -0.14
COL6A3-206ENST00000409809 TBC1D8O95759 1140 aa14.18□□□□□ -0.14
COL6A3-206ENST00000409809 ANKRD35Q8N283 1001 aa14.18□□□□□ -0.14
COL6A3-206ENST00000409809 FGD4Q96M96 766 aa14.18□□□□□ -0.14
COL6A3-206ENST00000409809 SH2D4AQ9H788 454 aa14.18□□□□□ -0.14
COL6A3-206ENST00000409809 PPP2R2CQ9Y2T4 447 aa14.18□□□□□ -0.14
COL6A3-206ENST00000409809 KRT9P35527 623 aa14.18□□□□□ -0.14
COL6A3-206ENST00000409809 DCAF8L1A6NGE4 600 aa14.18□□□□□ -0.14
COL6A3-206ENST00000409809 WDR46O15213 610 aaKnown RBP14.18□□□□□ -0.14
COL6A3-206ENST00000409809 MARCKSP29966 332 aaPredicted RBP14.18□□□□□ -0.14
COL6A3-206ENST00000409809 MOV10L1Q9BXT6 1211 aaKnown RBP14.18□□□□□ -0.14
COL6A3-206ENST00000409809 KIF24Q5T7B8 1368 aa14.18□□□□□ -0.14
COL6A3-206ENST00000409809 SMARCA5O60264 1052 aaPredicted RBP14.18□□□□□ -0.14
COL6A3-206ENST00000409809 VPS41P49754 854 aa14.18□□□□□ -0.14
COL6A3-206ENST00000409809 NDE1Q9NXR1 346 aa14.18□□□□□ -0.14
COL6A3-206ENST00000409809 ZNF202O95125 648 aa14.18□□□□□ -0.14
COL6A3-206ENST00000409809 BAG2O95816 211 aa14.18□□□□□ -0.14
COL6A3-206ENST00000409809 CUL3Q13618 768 aa14.18□□□□□ -0.14
COL6A3-206ENST00000409809 PSMD6Q15008 389 aa14.18□□□□□ -0.14
COL6A3-206ENST00000409809 KIFC2Q96AC6 838 aa14.18□□□□□ -0.14
COL6A3-206ENST00000409809 DCTPP1Q9H773 170 aa14.18□□□□□ -0.14
COL6A3-206ENST00000409809 CTNND2Q9UQB3 1225 aa14.18□□□□□ -0.14
COL6A3-206ENST00000409809 GCC2Q8IWJ2 1684 aa14.18□□□□□ -0.14
COL6A3-206ENST00000409809 HLA-DOAP06340 250 aa14.17□□□□□ -0.14
COL6A3-206ENST00000409809 KRT4P19013 534 aa14.17□□□□□ -0.14
COL6A3-206ENST00000409809 POSTNQ15063 836 aa14.17□□□□□ -0.14
COL6A3-206ENST00000409809 RPS6KA2Q15349 733 aa14.17□□□□□ -0.14
COL6A3-206ENST00000409809 ANO1Q5XXA6 986 aa14.17□□□□□ -0.14
COL6A3-206ENST00000409809 PYGBP11216 843 aa14.17□□□□□ -0.14
COL6A3-206ENST00000409809 RAD51AP2Q09MP3 1159 aa14.17□□□□□ -0.14
COL6A3-206ENST00000409809 SCHIP1Q9P0W5 487 aaPredicted RBP14.17□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 72.4 ms